Yersinia enterocolitica subsp. enterocolitica 8081, 8081 | |
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Genomic elements | 1 chromosomes(s), 1 circular plasmid(s) Hide details chromosome length: 4615899 bp gc-content (intragenic): 0.487821 % 5'UTR: 2 genes, length ø 82 bp, gc-content ø 0.397 '+'-strand: 1 genes, length ø 71 bp, gc-content ø 0.38 '-'-strand: 1 genes, length ø 94 bp, gc-content ø 0.414 CDS: 3979 genes, length ø 969 bp, gc-content ø 0.477 '+'-strand: 1950 genes, length ø 968 bp, gc-content ø 0.479 '-'-strand: 2029 genes, length ø 970 bp, gc-content ø 0.475 mRNA: 2 genes, length ø 1204 bp, gc-content ø 0.451 '+'-strand: 1 genes, length ø 1175 bp, gc-content ø 0.449 '-'-strand: 1 genes, length ø 1234 bp, gc-content ø 0.452 misc_RNA: 40 genes, length ø 158 bp, gc-content ø 0.485 '+'-strand: 19 genes, length ø 147 bp, gc-content ø 0.498 '-'-strand: 21 genes, length ø 167 bp, gc-content ø 0.474 misc_feature: 7026 genes, length ø 437 bp, gc-content ø 0.496 '+'-strand: 3657 genes, length ø 474 bp, gc-content ø 0.499 '-'-strand: 3369 genes, length ø 397 bp, gc-content ø 0.493 operon: 1 genes, length ø 40091 bp, gc-content ø 0.524 '+'-strand: 1 genes, length ø 40091 bp, gc-content ø 0.524 '-'-strand: 0 genes, length ø 0 bp, gc-content ø 0 Confidence [min/max/avg]: // Coverage [min/max/avg]: // pseudo: 193 genes, length ø 534 bp, gc-content ø 0.471 '+'-strand: 102 genes, length ø 602 bp, gc-content ø 0.478 '-'-strand: 91 genes, length ø 457 bp, gc-content ø 0.464 rRNA: 22 genes, length ø 1508 bp, gc-content ø 0.525 '+'-strand: 15 genes, length ø 1574 bp, gc-content ø 0.524 '-'-strand: 7 genes, length ø 1368 bp, gc-content ø 0.53 repeat_region: 63 genes, length ø 1197 bp, gc-content ø 0.492 '+'-strand: 29 genes, length ø 1204 bp, gc-content ø 0.485 '-'-strand: 34 genes, length ø 1191 bp, gc-content ø 0.498 repeat_unit: 78 genes, length ø 176 bp, gc-content ø 0.433 '+'-strand: 49 genes, length ø 236 bp, gc-content ø 0.435 '-'-strand: 29 genes, length ø 74 bp, gc-content ø 0.43 sig_peptide: 740 genes, length ø 83 bp, gc-content ø 0.458 '+'-strand: 369 genes, length ø 84 bp, gc-content ø 0.457 '-'-strand: 371 genes, length ø 82 bp, gc-content ø 0.459 stem_loop: 9 genes, length ø 32 bp, gc-content ø 0.437 '+'-strand: 3 genes, length ø 32 bp, gc-content ø 0.437 '-'-strand: 6 genes, length ø 32 bp, gc-content ø 0.437 tRNA: 81 genes, length ø 77 bp, gc-content ø 0.581 '+'-strand: 57 genes, length ø 78 bp, gc-content ø 0.582 '-'-strand: 24 genes, length ø 76 bp, gc-content ø 0.578 pYVe8081 length: 67721 bp gc-content (intragenic): 0.452984 % CDS: 72 genes, length ø 675 bp, gc-content ø 0.449 '+'-strand: 40 genes, length ø 685 bp, gc-content ø 0.446 '-'-strand: 32 genes, length ø 662 bp, gc-content ø 0.453 misc_feature: 70 genes, length ø 338 bp, gc-content ø 0.444 '+'-strand: 44 genes, length ø 317 bp, gc-content ø 0.454 '-'-strand: 26 genes, length ø 376 bp, gc-content ø 0.428 pseudo: 26 genes, length ø 339 bp, gc-content ø 0.475 '+'-strand: 14 genes, length ø 340 bp, gc-content ø 0.478 '-'-strand: 12 genes, length ø 337 bp, gc-content ø 0.473 rep_origin: 1 genes, length ø 650 bp, gc-content ø 0.432 '+'-strand: 1 genes, length ø 650 bp, gc-content ø 0.432 '-'-strand: 0 genes, length ø 0 bp, gc-content ø 0 Confidence [min/max/avg]: // Coverage [min/max/avg]: // repeat_region: 9 genes, length ø 654 bp, gc-content ø 0.496 '+'-strand: 5 genes, length ø 877 bp, gc-content ø 0.511 '-'-strand: 4 genes, length ø 375 bp, gc-content ø 0.476 repeat_unit: 12 genes, length ø 30 bp, gc-content ø 0.481 '+'-strand: 8 genes, length ø 37 bp, gc-content ø 0.492 '-'-strand: 4 genes, length ø 15 bp, gc-content ø 0.46 sig_peptide: 10 genes, length ø 72 bp, gc-content ø 0.405 '+'-strand: 7 genes, length ø 75 bp, gc-content ø 0.423 '-'-strand: 3 genes, length ø 64 bp, gc-content ø 0.363 |
Genome features | 5'UTR: 2 genes, length ø 82 bp, gc-content ø 0.397 '+'-strand: 1 genes, length ø 71 bp, gc-content ø 0.38 '-'-strand: 1 genes, length ø 94 bp, gc-content ø 0.414 CDS: 4051 genes, length ø 964 bp, gc-content ø 0.476 '+'-strand: 1990 genes, length ø 963 bp, gc-content ø 0.478 '-'-strand: 2061 genes, length ø 965 bp, gc-content ø 0.475 mRNA: 2 genes, length ø 1204 bp, gc-content ø 0.451 '+'-strand: 1 genes, length ø 1175 bp, gc-content ø 0.449 '-'-strand: 1 genes, length ø 1234 bp, gc-content ø 0.452 misc_RNA: 40 genes, length ø 158 bp, gc-content ø 0.485 '+'-strand: 19 genes, length ø 147 bp, gc-content ø 0.498 '-'-strand: 21 genes, length ø 167 bp, gc-content ø 0.474 misc_feature: 7096 genes, length ø 436 bp, gc-content ø 0.496 '+'-strand: 3701 genes, length ø 472 bp, gc-content ø 0.498 '-'-strand: 3395 genes, length ø 397 bp, gc-content ø 0.493 operon: 1 genes, length ø 40091 bp, gc-content ø 0.524 '+'-strand: 1 genes, length ø 40091 bp, gc-content ø 0.524 '-'-strand: 0 genes, length ø 0 bp, gc-content ø 0 pseudo: 219 genes, length ø 510 bp, gc-content ø 0.472 '+'-strand: 116 genes, length ø 570 bp, gc-content ø 0.478 '-'-strand: 103 genes, length ø 443 bp, gc-content ø 0.465 rRNA: 22 genes, length ø 1508 bp, gc-content ø 0.525 '+'-strand: 15 genes, length ø 1574 bp, gc-content ø 0.524 '-'-strand: 7 genes, length ø 1368 bp, gc-content ø 0.53 rep_origin: 1 genes, length ø 650 bp, gc-content ø 0.432 '+'-strand: 1 genes, length ø 650 bp, gc-content ø 0.432 '-'-strand: 0 genes, length ø 0 bp, gc-content ø 0 repeat_region: 72 genes, length ø 1129 bp, gc-content ø 0.493 '+'-strand: 34 genes, length ø 1156 bp, gc-content ø 0.489 '-'-strand: 38 genes, length ø 1105 bp, gc-content ø 0.496 repeat_unit: 90 genes, length ø 157 bp, gc-content ø 0.44 '+'-strand: 57 genes, length ø 208 bp, gc-content ø 0.443 '-'-strand: 33 genes, length ø 67 bp, gc-content ø 0.434 sig_peptide: 750 genes, length ø 83 bp, gc-content ø 0.458 '+'-strand: 376 genes, length ø 84 bp, gc-content ø 0.457 '-'-strand: 374 genes, length ø 82 bp, gc-content ø 0.459 stem_loop: 9 genes, length ø 32 bp, gc-content ø 0.437 '+'-strand: 3 genes, length ø 32 bp, gc-content ø 0.437 '-'-strand: 6 genes, length ø 32 bp, gc-content ø 0.437 tRNA: 81 genes, length ø 77 bp, gc-content ø 0.581 '+'-strand: 57 genes, length ø 78 bp, gc-content ø 0.582 '-'-strand: 24 genes, length ø 76 bp, gc-content ø 0.578 |
COG categories | |
Amino acid transport and metabolism [E] | 386 |
Carbohydrate transport and metabolism [G] | 290 |
Cell cycle control, mitosis and meiosis [D] | 38 |
Cell motility [N] | 185 |
Cell wall/membrane biogenesis [M] | 184 |
Chromatin structure and dynamics [B] | 0 |
Coenzyme transport and metabolism [H] | 169 |
Cytoskeleton [Z] | 0 |
Defense mechanisms [V] | 0 |
Energy production and conversion [C] | 206 |
Extracellular structures [W] | 0 |
Function unknown [S] | 229 |
General function prediction only [R] | 409 |
Inorganic ion transport and metabolism [P] | 259 |
Intracellular trafficking and secretion [U] | 3 |
Lipid transport and metabolism [I] | 74 |
NOT ANALYZED | 8522 |
Nuclear structure [Y] | 0 |
Nucleotide transport and metabolism [F] | 88 |
Posttranslational modification, protein turnover, chaperones [O] | 122 |
RNA processing and modification [A] | 0 |
Replication, recombination and repair [L] | 191 |
Secondary metabolites biosynthesis, transport and catabolism [Q] | 107 |
Signal transduction mechanisms [T] | 141 |
Transcription [K] | 286 |
Translation, ribosomal structure and biogenesis [J] | 173 |
Unclassified [-] | 848 |