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2024-04-25 22:56:29
Horizontal gene transfer (HGT) analysis according to Sigi-HMM
 
Sigi-HMM
is a tool for the prediction of genomic islands in prokaryotic genomes using hidden markov models.
Select genomic element:
Buchnera aphidicola str. APS (Acyrthosiphon pisum), APS, chromosome
Buchnera aphidicola str. APS (Acyrthosiphon pisum), APS, pLeu
Buchnera aphidicola str. APS (Acyrthosiphon pisum), APS, pTrp
Buchnera aphidicola str. Bp (Baizongia pistaciae), Bp (Baizongia pistaciae), chromosome
Buchnera aphidicola str. Bp (Baizongia pistaciae), Bp (Baizongia pistaciae), pBBp1
Buchnera aphidicola str. Cc (Cinara cedri), Cc, chromosome
Buchnera aphidicola str. Sg (Schizaphis graminum), Sg, chromosome
Candidatus Blochmannia floridanus, chromosome
Candidatus Blochmannia pennsylvanicus str. BPEN, BPEN, chromosome
Enterobacteria phage Fels-2, chromosome
Erwinia carotovora subsp. atroseptica SCRI1043, SCRI1043, chromosome
Escherichia coli 536, 536, chromosome
Escherichia coli APEC O1, APEC O1, chromosome
Escherichia coli CFT073, CFT073, chromosome
Escherichia coli K12, K-12, chromosome
Escherichia coli O157:H7 EDL933, EDL933, chromosome
Escherichia coli O157:H7 EDL933, EDL933, pO157
Escherichia coli O157:H7 str. Sakai, Sakai, chromosome
Escherichia coli O157:H7 str. Sakai, Sakai, pO157
Escherichia coli O157:H7 str. Sakai, Sakai, pOSAK1
Escherichia coli UTI89, UTI89, chromosome
Escherichia coli UTI89, UTI89, pUTI89
Escherichia coli W3110, K-12, chromosome
Escherichia coli, B171, pB171
Photorhabdus luminescens subsp. laumondii TTO1, TTO1, chromosome
Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67, B67, pSC138
Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67, B67, pSCV50
Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67, SC-B67, chromosome
Salmonella enterica subsp. enterica serovar Newport str. SL254, SL254, pSN254
Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150, ATCC 9150, chromosome
Salmonella enterica subsp. enterica serovar Typhi Ty2, Ty2, chromosome
Salmonella enterica subsp. enterica serovar Typhi str. CT18, CT18, chromosome
Salmonella enterica subsp. enterica serovar Typhi str. CT18, CT18, pHCM1
Salmonella enterica subsp. enterica serovar Typhi str. CT18, CT18, pHCM2
Salmonella typhimurium LT2, SGSC1412, pSLT
Shigella boydii Sb227, Sb227, chromosome
Shigella boydii Sb227, Sb227, pSB4_227
Shigella dysenteriae Sd197, Sd197, chromosome
Shigella dysenteriae Sd197, Sd197, pSD1_197
Shigella flexneri 2a str. 2457T, 2457T, chromosome
Shigella flexneri 2a str. 301, 301, chromosome
Shigella flexneri 2a str. 301, 301, pCP301
Shigella flexneri 5 str. 8401, 8401, chromosome
Shigella sonnei Ss046, Ss046, chromosome
Shigella sonnei Ss046, Ss046, pSS_046
Sodalis glossinidius str. morsitans, morsitans, chromosome
Sodalis glossinidius str. morsitans, morsitans, pSG1
Sodalis glossinidius str. morsitans, morsitans, pSG2
Sodalis glossinidius str. morsitans, morsitans, pSG3
Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis, chromosome
Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis, pWb1
Yersinia enterocolitica subsp. enterocolitica 8081, 8081, chromosome
Yersinia enterocolitica subsp. enterocolitica 8081, 8081, pYVe8081
Yersinia pestis Antiqua, Antiqua, chromosome
Yersinia pestis Antiqua, Antiqua, pCD
Yersinia pestis Antiqua, Antiqua, pMT
Yersinia pestis Antiqua, Antiqua, pPCP
Yersinia pestis CO92, CO92, chromosome
Yersinia pestis CO92, CO92, pCD1
Yersinia pestis CO92, CO92, pMT1
Yersinia pestis CO92, CO92, pPCP1
Yersinia pestis KIM, KIM, chromosome
Yersinia pestis KIM, KIM, pMT-1
Yersinia pestis Nepal516, Nepal516, chromosome
Yersinia pestis Nepal516, Nepal516, pMT
Yersinia pestis Nepal516, Nepal516, pPCP
Yersinia pestis biovar Microtus str. 91001, 91001, chromosome
Yersinia pestis biovar Microtus str. 91001, 91001, pCD1
Yersinia pestis biovar Microtus str. 91001, 91001, pCRY
Yersinia pestis biovar Microtus str. 91001, 91001, pMT1
Yersinia pestis biovar Microtus str. 91001, 91001, pPCP1
Yersinia pestis biovar Orientalis str. IP275, IP275, pIP1202
Yersinia pseudotuberculosis IP 32953, IP 32953, pYV
Yersinia pseudotuberculosis IP 32953, IP 32953, pYptb32953
Yersinia pseudotuberculosis IP 32953, IP32953, chromosome
Graphics
Table of all Genes
Table of putative alien Genes
Free access