Search by ID Search by GC2ID Search by GeninfoID Search by gene name Search by locus tag Search by gene description Search by gene note Search by gene length (please use '<', '>' or '=') Select gene list
KARI (15 genes)
e col i o157 E (12 genes)
e coli o157:h Sakai (7 genes)
salmonela rrs (7 genes)
Select gene type(s)
-10_signal
-35_signal
5'UTR
CDS
RBS
mRNA
misc_RNA
misc_feature
misc_recomb
misc_signal
operon
promoter
protein_bind
pseudo
rRNA
rep_origin
repeat_region
repeat_unit
sig_peptide
stem_loop
tRNA
terminator
variation
Search CDS with wrong boundaries
Any type of error
Wrong length of reading frame
No start codon at the begin of reading frame
No stop codon at the end of reading frame
Reading frame interrupted by stop codon
Select organism(s)
Buchnera aphidicola str. APS (Acyrthosiphon pisum), APS
Buchnera aphidicola str. Bp (Baizongia pistaciae), Bp (Baizongia pistaciae)
Buchnera aphidicola str. Cc (Cinara cedri), Cc
Buchnera aphidicola str. Sg (Schizaphis graminum), Sg
Candidatus Blochmannia floridanus
Candidatus Blochmannia pennsylvanicus str. BPEN, BPEN
Enterobacteria phage Fels-2
Erwinia carotovora subsp. atroseptica SCRI1043, SCRI1043
Escherichia coli 536, 536
Escherichia coli APEC O1, APEC O1
Escherichia coli CFT073, CFT073
Escherichia coli K12, K-12
Escherichia coli O157:H7 EDL933, EDL933
Escherichia coli O157:H7 str. Sakai, Sakai
Escherichia coli UTI89, UTI89
Escherichia coli W3110, K-12
Escherichia coli, B171
Photorhabdus luminescens subsp. laumondii TTO1, TTO1
Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67, B67
Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67, SC-B67
Salmonella enterica subsp. enterica serovar Newport str. SL254, SL254
Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150, ATCC 9150
Salmonella enterica subsp. enterica serovar Typhi Ty2, Ty2
Salmonella enterica subsp. enterica serovar Typhi str. CT18, CT18
Salmonella typhimurium LT2, SGSC1412
Shigella boydii Sb227, Sb227
Shigella dysenteriae Sd197, Sd197
Shigella flexneri 2a str. 2457T, 2457T
Shigella flexneri 2a str. 301, 301
Shigella flexneri 5 str. 8401, 8401
Shigella sonnei Ss046, Ss046
Sodalis glossinidius str. morsitans, morsitans
Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis
Yersinia enterocolitica subsp. enterocolitica 8081, 8081
Yersinia pestis Antiqua, Antiqua
Yersinia pestis CO92, CO92
Yersinia pestis KIM, KIM
Yersinia pestis Nepal516, Nepal516
Yersinia pestis biovar Microtus str. 91001, 91001
Yersinia pestis biovar Orientalis str. IP275, IP275
Yersinia pseudotuberculosis IP 32953, IP 32953
Yersinia pseudotuberculosis IP 32953, IP32953
Search by name of genomic element Select specific genomic element(s)
Buchnera aphidicola str. APS (Acyrthosiphon pisum), APS: chromosome
Buchnera aphidicola str. APS (Acyrthosiphon pisum), APS: pLeu
Buchnera aphidicola str. APS (Acyrthosiphon pisum), APS: pTrp
Buchnera aphidicola str. Bp (Baizongia pistaciae), Bp (Baizongia pistaciae): chromosome
Buchnera aphidicola str. Bp (Baizongia pistaciae), Bp (Baizongia pistaciae): pBBp1
Buchnera aphidicola str. Cc (Cinara cedri), Cc: chromosome
Buchnera aphidicola str. Sg (Schizaphis graminum), Sg: chromosome
Candidatus Blochmannia floridanus: chromosome
Candidatus Blochmannia pennsylvanicus str. BPEN, BPEN: chromosome
Enterobacteria phage Fels-2: chromosome
Erwinia carotovora subsp. atroseptica SCRI1043, SCRI1043: chromosome
Escherichia coli 536, 536: chromosome
Escherichia coli APEC O1, APEC O1: chromosome
Escherichia coli CFT073, CFT073: chromosome
Escherichia coli K12, K-12: chromosome
Escherichia coli O157:H7 EDL933, EDL933: chromosome
Escherichia coli O157:H7 EDL933, EDL933: pO157
Escherichia coli O157:H7 str. Sakai, Sakai: chromosome
Escherichia coli O157:H7 str. Sakai, Sakai: pO157
Escherichia coli O157:H7 str. Sakai, Sakai: pOSAK1
Escherichia coli UTI89, UTI89: chromosome
Escherichia coli UTI89, UTI89: pUTI89
Escherichia coli W3110, K-12: chromosome
Escherichia coli, B171: pB171
Photorhabdus luminescens subsp. laumondii TTO1, TTO1: chromosome
Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67, B67: pSC138
Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67, B67: pSCV50
Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67, SC-B67: chromosome
Salmonella enterica subsp. enterica serovar Newport str. SL254, SL254: pSN254
Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150, ATCC 9150: chromosome
Salmonella enterica subsp. enterica serovar Typhi Ty2, Ty2: chromosome
Salmonella enterica subsp. enterica serovar Typhi str. CT18, CT18: chromosome
Salmonella enterica subsp. enterica serovar Typhi str. CT18, CT18: pHCM1
Salmonella enterica subsp. enterica serovar Typhi str. CT18, CT18: pHCM2
Salmonella typhimurium LT2, SGSC1412: pSLT
Shigella boydii Sb227, Sb227: chromosome
Shigella boydii Sb227, Sb227: pSB4_227
Shigella dysenteriae Sd197, Sd197: chromosome
Shigella dysenteriae Sd197, Sd197: pSD1_197
Shigella flexneri 2a str. 2457T, 2457T: chromosome
Shigella flexneri 2a str. 301, 301: chromosome
Shigella flexneri 2a str. 301, 301: pCP301
Shigella flexneri 5 str. 8401, 8401: chromosome
Shigella sonnei Ss046, Ss046: chromosome
Shigella sonnei Ss046, Ss046: pSS_046
Sodalis glossinidius str. morsitans, morsitans: chromosome
Sodalis glossinidius str. morsitans, morsitans: pSG1
Sodalis glossinidius str. morsitans, morsitans: pSG2
Sodalis glossinidius str. morsitans, morsitans: pSG3
Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis: chromosome
Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis: pWb1
Yersinia enterocolitica subsp. enterocolitica 8081, 8081: chromosome
Yersinia enterocolitica subsp. enterocolitica 8081, 8081: pYVe8081
Yersinia pestis Antiqua, Antiqua: chromosome
Yersinia pestis Antiqua, Antiqua: pCD
Yersinia pestis Antiqua, Antiqua: pMT
Yersinia pestis Antiqua, Antiqua: pPCP
Yersinia pestis CO92, CO92: chromosome
Yersinia pestis CO92, CO92: pCD1
Yersinia pestis CO92, CO92: pMT1
Yersinia pestis CO92, CO92: pPCP1
Yersinia pestis KIM, KIM: chromosome
Yersinia pestis KIM, KIM: pMT-1
Yersinia pestis Nepal516, Nepal516: chromosome
Yersinia pestis Nepal516, Nepal516: pMT
Yersinia pestis Nepal516, Nepal516: pPCP
Yersinia pestis biovar Microtus str. 91001, 91001: chromosome
Yersinia pestis biovar Microtus str. 91001, 91001: pCD1
Yersinia pestis biovar Microtus str. 91001, 91001: pCRY
Yersinia pestis biovar Microtus str. 91001, 91001: pMT1
Yersinia pestis biovar Microtus str. 91001, 91001: pPCP1
Yersinia pestis biovar Orientalis str. IP275, IP275: pIP1202
Yersinia pseudotuberculosis IP 32953, IP 32953: pYV
Yersinia pseudotuberculosis IP 32953, IP 32953: pYptb32953
Yersinia pseudotuberculosis IP 32953, IP32953: chromosome
Select type of genomic element
chromosome
plasmid
segment
Select gene COG categories
Amino acid transport and metabolism [E]
Carbohydrate transport and metabolism [G]
Cell cycle control, mitosis and meiosis [D]
Cell motility [N]
Cell wall/membrane biogenesis [M]
Chromatin structure and dynamics [B]
Coenzyme transport and metabolism [H]
Cytoskeleton [Z]
Defense mechanisms [V]
Energy production and conversion [C]
Extracellular structures [W]
Function unknown [S]
General function prediction only [R]
Inorganic ion transport and metabolism [P]
Intracellular trafficking and secretion [U]
Lipid transport and metabolism [I]
NOT ANALYZED
Nuclear structure [Y]
Nucleotide transport and metabolism [F]
Posttranslational modification, protein turnover, chaperones [O]
RNA processing and modification [A]
Replication, recombination and repair [L]
Secondary metabolites biosynthesis, transport and catabolism [Q]
Signal transduction mechanisms [T]
Transcription [K]
Translation, ribosomal structure and biogenesis [J]
Unclassified [-]
Search by protein sequence motif (Prosite format)
Select by external database identifier
UniProt
2DBase-Ecoli
Aarhus/Ghent-2DPAGE
AGD
Allergome
ANU-2DPAGE
ArachnoServer
ArrayExpress
Bgee
BindingDB
BioCyc
BRENDA
CAZy
CGD
CleanEx
COMPLUYEAST-2DPAGE
ConoServer
Cornea-2DPAGE
CTD
CYGD
dictyBase
DIP
DisProt
DOSAC-COBS-2DPAGE
DrugBank
EchoBASE
ECO2DBASE
EcoGene
eggNOG
EMBL
Ensembl
EnsemblBacteria
EnsemblFungi
EnsemblMetazoa
EnsemblPlants
EnsemblProtists
euHCVdb
EuPathDB
FlyBase
Gene3D
GeneCards
GeneDB_Spombe
GeneFarm
GeneID
GeneTree
Genevestigator
GenoList
GenomeReviews
GermOnline
GlycoSuiteDB
GO
Gramene
H-InvDB
HAMAP
HGNC
HOGENOM
HOVERGEN
HPA
HSSP
InParanoid
IntAct
InterPro
IPI
KEGG
KO
LegioList
Leproma
MaizeGDB
MEROPS
MGI
MIM
MINT
NextBio
neXtProt
NMPDR
OGP
OMA
Orphanet
OrthoDB
PANTHER
Pathway_Interaction_
PDB
PDBsum
PeptideAtlas
PeroxiBase
Pfam
PharmGKB
PHCI-2DPAGE
PhosphoSite
PhosSite
PhylomeDB
PIR
PIRSF
PMAP-CutDB
PMMA-2DPAGE
PptaseDB
PRIDE
PRINTS
ProDom
ProMEX
PROSITE
ProtClustDB
ProteinModelPortal
PseudoCAP
Rat-heart-2DPAGE
Reactome
REBASE
RefSeq
REPRODUCTION-2DPAGE
RGD
SGD
Siena-2DPAGE
SMART
SMR
STRING
SUPFAM
SWISS-2DPAGE
TAIR
TCDB
TIGR
TIGRFAMs
TubercuList
UCD-2DPAGE
UCSC
UniGene
VectorBase
World-2DPAGE
WormBase
Xenbase
ZFIN
Select by external database (returns all database entries for a given selection)
2DBase-Ecoli
Aarhus/Ghent-2DPAGE
AGD
Allergome
ANU-2DPAGE
ArachnoServer
ArrayExpress
Bgee
BindingDB
BioCyc
BRENDA
CAZy
CGD
CleanEx
COMPLUYEAST-2DPAGE
ConoServer
Cornea-2DPAGE
CTD
CYGD
dictyBase
DIP
DisProt
DOSAC-COBS-2DPAGE
DrugBank
EchoBASE
ECO2DBASE
EcoGene
eggNOG
EMBL
Ensembl
EnsemblBacteria
EnsemblFungi
EnsemblMetazoa
EnsemblPlants
EnsemblProtists
euHCVdb
EuPathDB
FlyBase
Gene3D
GeneCards
GeneDB_Spombe
GeneFarm
GeneID
GeneTree
Genevestigator
GenoList
GenomeReviews
GermOnline
GlycoSuiteDB
GO
Gramene
H-InvDB
HAMAP
HGNC
HOGENOM
HOVERGEN
HPA
HSSP
InParanoid
IntAct
InterPro
IPI
KEGG
KO
LegioList
Leproma
MaizeGDB
MEROPS
MGI
MIM
MINT
NextBio
neXtProt
NMPDR
OGP
OMA
Orphanet
OrthoDB
PANTHER
Pathway_Interaction_
PDB
PDBsum
PeptideAtlas
PeroxiBase
Pfam
PharmGKB
PHCI-2DPAGE
PhosphoSite
PhosSite
PhylomeDB
PIR
PIRSF
PMAP-CutDB
PMMA-2DPAGE
PptaseDB
PRIDE
PRINTS
ProDom
ProMEX
PROSITE
ProtClustDB
ProteinModelPortal
PseudoCAP
Rat-heart-2DPAGE
Reactome
REBASE
RefSeq
REPRODUCTION-2DPAGE
RGD
SGD
Siena-2DPAGE
SMART
SMR
STRING
SUPFAM
SWISS-2DPAGE
TAIR
TCDB
TIGR
TIGRFAMs
TubercuList
UCD-2DPAGE
UCSC
UniGene
VectorBase
World-2DPAGE
WormBase
Xenbase
ZFIN
HGT - Select by SIGI-HMM classification
Normal gene
Outlier normal gene
Putative alien gene
Outlier putative alien gene
Normal gene within an island
Putatively highly expressed gene
Comprehensive output Options related to the comprehensive output Do not show BBHs Do not show Swiss-Prot and TrEMBL hits