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2024-05-18 08:23:29
Summary for Sodalis glossinidius str. morsitans, morsitans.
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chr: chromosome(s), pl: plasmid(s), seg: segment(s)
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 Sodalis glossinidius str. morsitans, morsitans
Genomic elements1 chromosomes(s), 3 circular plasmid(s)
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chromosome
length: 4171146 bp
gc-content (intragenic): 0.555688 %

 
CDS:
2432 genes, length ø 873 bp, gc-content ø 0.554
 
'+'-strand:
1267 genes, length ø 904 bp, gc-content ø 0.558
 
'-'-strand:
1165 genes, length ø 839 bp, gc-content ø 0.55
 
rRNA:
22 genes, length ø 1369 bp, gc-content ø 0.578
 
'+'-strand:
10 genes, length ø 1298 bp, gc-content ø 0.581
 
'-'-strand:
12 genes, length ø 1429 bp, gc-content ø 0.576
 
tRNA:
69 genes, length ø 78 bp, gc-content ø 0.588
 
'+'-strand:
38 genes, length ø 77 bp, gc-content ø 0.589
 
'-'-strand:
31 genes, length ø 78 bp, gc-content ø 0.588
 

 
pSG1
length: 83306 bp
gc-content (intragenic): 0.523955 %

 
CDS:
54 genes, length ø 640 bp, gc-content ø 0.523
 
'+'-strand:
15 genes, length ø 384 bp, gc-content ø 0.46
 
'-'-strand:
39 genes, length ø 739 bp, gc-content ø 0.548
 

 
pSG2
length: 27240 bp
gc-content (intragenic): 0.472168 %

 
CDS:
23 genes, length ø 569 bp, gc-content ø 0.472
 
'+'-strand:
14 genes, length ø 636 bp, gc-content ø 0.475
 
'-'-strand:
9 genes, length ø 465 bp, gc-content ø 0.467
 

 
pSG3
length: 10810 bp
gc-content (intragenic): 0.48998 %

 
CDS:
7 genes, length ø 386 bp, gc-content ø 0.489
 
'+'-strand:
3 genes, length ø 387 bp, gc-content ø 0.534
 
'-'-strand:
4 genes, length ø 385 bp, gc-content ø 0.456
 

 
Genome featuresCDS:
2516 genes, length ø 864 bp, gc-content ø 0.552
 
'+'-strand:
1299 genes, length ø 894 bp, gc-content ø 0.556
 
'-'-strand:
1217 genes, length ø 831 bp, gc-content ø 0.549
 
rRNA:
22 genes, length ø 1369 bp, gc-content ø 0.578
 
'+'-strand:
10 genes, length ø 1298 bp, gc-content ø 0.581
 
'-'-strand:
12 genes, length ø 1429 bp, gc-content ø 0.576
 
tRNA:
69 genes, length ø 78 bp, gc-content ø 0.588
 
'+'-strand:
38 genes, length ø 77 bp, gc-content ø 0.589
 
'-'-strand:
31 genes, length ø 78 bp, gc-content ø 0.588
 
COG categories 
Amino acid transport and metabolism [E]212
Carbohydrate transport and metabolism [G]144
Cell cycle control, mitosis and meiosis [D]39
Cell motility [N]76
Cell wall/membrane biogenesis [M]157
Chromatin structure and dynamics [B]0
Coenzyme transport and metabolism [H]101
Cytoskeleton [Z]0
Defense mechanisms [V]25
Energy production and conversion [C]108
Extracellular structures [W]1
Function unknown [S]204
General function prediction only [R]284
Inorganic ion transport and metabolism [P]132
Intracellular trafficking and secretion [U]90
Lipid transport and metabolism [I]49
NOT ANALYZED91
Nuclear structure [Y]0
Nucleotide transport and metabolism [F]63
Posttranslational modification, protein turnover, chaperones [O]96
RNA processing and modification [A]1
Replication, recombination and repair [L]153
Secondary metabolites biosynthesis, transport and catabolism [Q]38
Signal transduction mechanisms [T]101
Transcription [K]185
Translation, ribosomal structure and biogenesis [J]156
Unclassified [-]428