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2024-05-18 10:34:13
Summary for Shigella sonnei Ss046, Ss046.
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chr: chromosome(s), pl: plasmid(s), seg: segment(s)
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 Shigella sonnei Ss046, Ss046
Genomic elements1 chromosomes(s), 1 circular plasmid(s)
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chromosome
length: 4825265 bp
gc-content (intragenic): 0.517853 %

 
CDS:
4223 genes, length ø 919 bp, gc-content ø 0.516
 
'+'-strand:
2075 genes, length ø 916 bp, gc-content ø 0.513
 
'-'-strand:
2148 genes, length ø 923 bp, gc-content ø 0.518
 
pseudo:
212 genes, length ø 1519 bp, gc-content ø 0.503
 
'+'-strand:
102 genes, length ø 1630 bp, gc-content ø 0.499
 
'-'-strand:
110 genes, length ø 1415 bp, gc-content ø 0.506
 
rRNA:
22 genes, length ø 1457 bp, gc-content ø 0.577
 
'+'-strand:
15 genes, length ø 1521 bp, gc-content ø 0.575
 
'-'-strand:
7 genes, length ø 1320 bp, gc-content ø 0.581
 
repeat_region:
394 genes, length ø 1006 bp, gc-content ø 0.521
 
'+'-strand:
206 genes, length ø 1022 bp, gc-content ø 0.519
 
'-'-strand:
188 genes, length ø 987 bp, gc-content ø 0.523
 
tRNA:
97 genes, length ø 78 bp, gc-content ø 0.587
 
'+'-strand:
48 genes, length ø 77 bp, gc-content ø 0.588
 
'-'-strand:
49 genes, length ø 79 bp, gc-content ø 0.587
 

 
pSS_046
length: 214396 bp
gc-content (intragenic): 0.479116 %

 
CDS:
238 genes, length ø 706 bp, gc-content ø 0.463
 
'+'-strand:
153 genes, length ø 744 bp, gc-content ø 0.457
 
'-'-strand:
85 genes, length ø 639 bp, gc-content ø 0.474
 
pseudo:
3 genes, length ø 1295 bp, gc-content ø 0.513
 
'+'-strand:
2 genes, length ø 1058 bp, gc-content ø 0.547
 
'-'-strand:
1 genes, length ø 1770 bp, gc-content ø 0.445
 
repeat_region:
97 genes, length ø 754 bp, gc-content ø 0.516
 
'+'-strand:
51 genes, length ø 762 bp, gc-content ø 0.517
 
'-'-strand:
46 genes, length ø 745 bp, gc-content ø 0.514
 

 
Genome featuresCDS:
4461 genes, length ø 908 bp, gc-content ø 0.513
 
'+'-strand:
2228 genes, length ø 904 bp, gc-content ø 0.509
 
'-'-strand:
2233 genes, length ø 912 bp, gc-content ø 0.517
 
pseudo:
215 genes, length ø 1515 bp, gc-content ø 0.503
 
'+'-strand:
104 genes, length ø 1619 bp, gc-content ø 0.5
 
'-'-strand:
111 genes, length ø 1418 bp, gc-content ø 0.506
 
rRNA:
22 genes, length ø 1457 bp, gc-content ø 0.577
 
'+'-strand:
15 genes, length ø 1521 bp, gc-content ø 0.575
 
'-'-strand:
7 genes, length ø 1320 bp, gc-content ø 0.581
 
repeat_region:
491 genes, length ø 956 bp, gc-content ø 0.52
 
'+'-strand:
257 genes, length ø 971 bp, gc-content ø 0.519
 
'-'-strand:
234 genes, length ø 940 bp, gc-content ø 0.521
 
tRNA:
97 genes, length ø 78 bp, gc-content ø 0.587
 
'+'-strand:
48 genes, length ø 77 bp, gc-content ø 0.588
 
'-'-strand:
49 genes, length ø 79 bp, gc-content ø 0.587
 
COG categories 
Amino acid transport and metabolism [E]396
Carbohydrate transport and metabolism [G]325
Cell cycle control, mitosis and meiosis [D]43
Cell motility [N]82
Cell wall/membrane biogenesis [M]225
Chromatin structure and dynamics [B]0
Coenzyme transport and metabolism [H]146
Cytoskeleton [Z]0
Defense mechanisms [V]42
Energy production and conversion [C]270
Extracellular structures [W]2
Function unknown [S]338
General function prediction only [R]472
Inorganic ion transport and metabolism [P]275
Intracellular trafficking and secretion [U]103
Lipid transport and metabolism [I]93
NOT ANALYZED822
Nuclear structure [Y]0
Nucleotide transport and metabolism [F]79
Posttranslational modification, protein turnover, chaperones [O]144
RNA processing and modification [A]3
Replication, recombination and repair [L]788
Secondary metabolites biosynthesis, transport and catabolism [Q]84
Signal transduction mechanisms [T]162
Transcription [K]269
Translation, ribosomal structure and biogenesis [J]180
Unclassified [-]511