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2024-05-04 14:16:12
Summary for Shigella flexneri 2a str. 2457T, 2457T.
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chr: chromosome(s), pl: plasmid(s), seg: segment(s)
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 Shigella flexneri 2a str. 2457T, 2457T
Genomic elements1 chromosomes(s)
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Genome featuresCDS:
4068 genes, length ø 876 bp, gc-content ø 0.515
 
'+'-strand:
2028 genes, length ø 875 bp, gc-content ø 0.515
 
'-'-strand:
2040 genes, length ø 878 bp, gc-content ø 0.515
 
misc_RNA:
10 genes, length ø 185 bp, gc-content ø 0.5
 
'+'-strand:
6 genes, length ø 152 bp, gc-content ø 0.506
 
'-'-strand:
4 genes, length ø 235 bp, gc-content ø 0.493
 
misc_feature:
1 genes, length ø 23 bp, gc-content ø 0.217
 
'+'-strand:
1 genes, length ø 23 bp, gc-content ø 0.217
 
'-'-strand:
0 genes, length ø 0 bp, gc-content ø 0
 
pseudo:
384 genes, length ø 1079 bp, gc-content ø 0.496
 
'+'-strand:
201 genes, length ø 1072 bp, gc-content ø 0.489
 
'-'-strand:
183 genes, length ø 1087 bp, gc-content ø 0.505
 
rRNA:
22 genes, length ø 1457 bp, gc-content ø 0.577
 
'+'-strand:
3 genes, length ø 1521 bp, gc-content ø 0.574
 
'-'-strand:
19 genes, length ø 1447 bp, gc-content ø 0.578
 
rep_origin:
1 genes, length ø 232 bp, gc-content ø 0.409
 
'+'-strand:
0 genes, length ø 0 bp, gc-content ø 0
 
'-'-strand:
1 genes, length ø 232 bp, gc-content ø 0.409
 
repeat_region:
555 genes, length ø 601 bp, gc-content ø 0.552
 
'+'-strand:
529 genes, length ø 627 bp, gc-content ø 0.554
 
'-'-strand:
26 genes, length ø 77 bp, gc-content ø 0.514
 
tRNA:
98 genes, length ø 78 bp, gc-content ø 0.585
 
'+'-strand:
40 genes, length ø 76 bp, gc-content ø 0.579
 
'-'-strand:
58 genes, length ø 79 bp, gc-content ø 0.589
 
COG categories 
Amino acid transport and metabolism [E]374
Carbohydrate transport and metabolism [G]347
Cell cycle control, mitosis and meiosis [D]40
Cell motility [N]72
Cell wall/membrane biogenesis [M]203
Chromatin structure and dynamics [B]0
Coenzyme transport and metabolism [H]144
Cytoskeleton [Z]0
Defense mechanisms [V]41
Energy production and conversion [C]249
Extracellular structures [W]1
Function unknown [S]288
General function prediction only [R]447
Inorganic ion transport and metabolism [P]246
Intracellular trafficking and secretion [U]87
Lipid transport and metabolism [I]89
NOT ANALYZED1058
Nuclear structure [Y]0
Nucleotide transport and metabolism [F]79
Posttranslational modification, protein turnover, chaperones [O]135
RNA processing and modification [A]5
Replication, recombination and repair [L]673
Secondary metabolites biosynthesis, transport and catabolism [Q]68
Signal transduction mechanisms [T]134
Transcription [K]267
Translation, ribosomal structure and biogenesis [J]179
Unclassified [-]455