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2024-05-04 13:01:53
Summary for Erwinia carotovora subsp. atroseptica SCRI1043, SCRI1043.
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chr: chromosome(s), pl: plasmid(s), seg: segment(s)
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 Erwinia carotovora subsp. atroseptica SCRI1043, SCRI1043
Genomic elements1 chromosomes(s)
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Genome featuresCDS:
4472 genes, length ø 973 bp, gc-content ø 0.511
 
'+'-strand:
2162 genes, length ø 962 bp, gc-content ø 0.508
 
'-'-strand:
2310 genes, length ø 983 bp, gc-content ø 0.513
 
misc_RNA:
24 genes, length ø 160 bp, gc-content ø 0.487
 
'+'-strand:
12 genes, length ø 162 bp, gc-content ø 0.5
 
'-'-strand:
12 genes, length ø 158 bp, gc-content ø 0.474
 
misc_feature:
8274 genes, length ø 433 bp, gc-content ø 0.53
 
'+'-strand:
3855 genes, length ø 461 bp, gc-content ø 0.526
 
'-'-strand:
4419 genes, length ø 408 bp, gc-content ø 0.534
 
pseudo:
66 genes, length ø 2383 bp, gc-content ø 0.513
 
'+'-strand:
42 genes, length ø 3251 bp, gc-content ø 0.51
 
'-'-strand:
24 genes, length ø 862 bp, gc-content ø 0.517
 
rRNA:
22 genes, length ø 1459 bp, gc-content ø 0.566
 
'+'-strand:
9 genes, length ø 1523 bp, gc-content ø 0.564
 
'-'-strand:
13 genes, length ø 1415 bp, gc-content ø 0.567
 
repeat_region:
19 genes, length ø 30 bp, gc-content ø 0.522
 
'+'-strand:
9 genes, length ø 30 bp, gc-content ø 0.465
 
'-'-strand:
10 genes, length ø 30 bp, gc-content ø 0.573
 
repeat_unit:
2 genes, length ø 1487 bp, gc-content ø 0.454
 
'+'-strand:
2 genes, length ø 1487 bp, gc-content ø 0.454
 
'-'-strand:
0 genes, length ø 0 bp, gc-content ø 0
 
tRNA:
76 genes, length ø 78 bp, gc-content ø 0.584
 
'+'-strand:
31 genes, length ø 79 bp, gc-content ø 0.573
 
'-'-strand:
45 genes, length ø 77 bp, gc-content ø 0.592
 
variation:
2 genes, length ø 7 bp, gc-content ø 0.5
 
'+'-strand:
2 genes, length ø 7 bp, gc-content ø 0.5
 
'-'-strand:
0 genes, length ø 0 bp, gc-content ø 0
 
COG categories 
Amino acid transport and metabolism [E]470
Carbohydrate transport and metabolism [G]373
Cell cycle control, mitosis and meiosis [D]52
Cell motility [N]118
Cell wall/membrane biogenesis [M]249
Chromatin structure and dynamics [B]0
Coenzyme transport and metabolism [H]162
Cytoskeleton [Z]0
Defense mechanisms [V]47
Energy production and conversion [C]245
Extracellular structures [W]5
Function unknown [S]333
General function prediction only [R]546
Inorganic ion transport and metabolism [P]337
Intracellular trafficking and secretion [U]137
Lipid transport and metabolism [I]116
NOT ANALYZED8485
Nuclear structure [Y]0
Nucleotide transport and metabolism [F]86
Posttranslational modification, protein turnover, chaperones [O]153
RNA processing and modification [A]1
Replication, recombination and repair [L]193
Secondary metabolites biosynthesis, transport and catabolism [Q]104
Signal transduction mechanisms [T]216
Transcription [K]364
Translation, ribosomal structure and biogenesis [J]186
Unclassified [-]685