ENGENE - Ecoli Genome Browser - Summary for Yersinia pestis KIM, KIM.

Summary for Yersinia pestis KIM, KIM.

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chr: chromosome(s), pl: plasmid(s), seg: segment(s)

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	Yersinia pestis KIM, KIM
Genomic elements	1 chromosomes(s), 1 circular plasmid(s) Hide details chromosome length: 4600755 bp gc-content (intragenic): 0.481995 % CDS: 4086 genes, length ø 938 bp, gc-content ø 0.479 '+'-strand: 2103 genes, length ø 930 bp, gc-content ø 0.479 '-'-strand: 1983 genes, length ø 946 bp, gc-content ø 0.479 misc_RNA: 3 genes, length ø 282 bp, gc-content ø 0.516 '+'-strand: 1 genes, length ø 364 bp, gc-content ø 0.516 '-'-strand: 2 genes, length ø 242 bp, gc-content ø 0.516 pseudo: 54 genes, length ø 1824 bp, gc-content ø 0.487 '+'-strand: 30 genes, length ø 1895 bp, gc-content ø 0.484 '-'-strand: 24 genes, length ø 1737 bp, gc-content ø 0.491 rRNA: 24 genes, length ø 1362 bp, gc-content ø 0.569 '+'-strand: 18 genes, length ø 1304 bp, gc-content ø 0.571 '-'-strand: 6 genes, length ø 1537 bp, gc-content ø 0.563 repeat_region: 124 genes, length ø 1161 bp, gc-content ø 0.482 '+'-strand: 63 genes, length ø 1141 bp, gc-content ø 0.481 '-'-strand: 61 genes, length ø 1182 bp, gc-content ø 0.482 tRNA: 73 genes, length ø 75 bp, gc-content ø 0.578 '+'-strand: 46 genes, length ø 75 bp, gc-content ø 0.581 '-'-strand: 27 genes, length ø 75 bp, gc-content ø 0.573 pMT-1 length: 100990 bp gc-content (intragenic): 0.537823 % CDS: 116 genes, length ø 767 bp, gc-content ø 0.506 '+'-strand: 83 genes, length ø 843 bp, gc-content ø 0.515 '-'-strand: 33 genes, length ø 575 bp, gc-content ø 0.481 misc_feature: 6 genes, length ø 373 bp, gc-content ø 0.478 '+'-strand: 6 genes, length ø 373 bp, gc-content ø 0.478 '-'-strand: 0 genes, length ø 0 bp, gc-content ø 0 Confidence [min/max/avg]: // Coverage [min/max/avg]: // rep_origin: 2 genes, length ø 1092 bp, gc-content ø 0.45 '+'-strand: 1 genes, length ø 274 bp, gc-content ø 0.405 '-'-strand: 1 genes, length ø 1911 bp, gc-content ø 0.495 repeat_region: 28 genes, length ø 231 bp, gc-content ø 0.457 '+'-strand: 12 genes, length ø 513 bp, gc-content ø 0.449 '-'-strand: 16 genes, length ø 19 bp, gc-content ø 0.463 variation: 25 genes, length ø 2 bp, gc-content ø 0.688 '+'-strand: 25 genes, length ø 2 bp, gc-content ø 0.688 '-'-strand: 0 genes, length ø 0 bp, gc-content ø 0 Confidence [min/max/avg]: // Coverage [min/max/avg]: //
Genome features	CDS: 4202 genes, length ø 933 bp, gc-content ø 0.48 '+'-strand: 2186 genes, length ø 927 bp, gc-content ø 0.481 '-'-strand: 2016 genes, length ø 940 bp, gc-content ø 0.479 misc_RNA: 3 genes, length ø 282 bp, gc-content ø 0.516 '+'-strand: 1 genes, length ø 364 bp, gc-content ø 0.516 '-'-strand: 2 genes, length ø 242 bp, gc-content ø 0.516 misc_feature: 6 genes, length ø 373 bp, gc-content ø 0.478 '+'-strand: 6 genes, length ø 373 bp, gc-content ø 0.478 '-'-strand: 0 genes, length ø 0 bp, gc-content ø 0 pseudo: 54 genes, length ø 1824 bp, gc-content ø 0.487 '+'-strand: 30 genes, length ø 1895 bp, gc-content ø 0.484 '-'-strand: 24 genes, length ø 1737 bp, gc-content ø 0.491 rRNA: 24 genes, length ø 1362 bp, gc-content ø 0.569 '+'-strand: 18 genes, length ø 1304 bp, gc-content ø 0.571 '-'-strand: 6 genes, length ø 1537 bp, gc-content ø 0.563 rep_origin: 2 genes, length ø 1092 bp, gc-content ø 0.45 '+'-strand: 1 genes, length ø 274 bp, gc-content ø 0.405 '-'-strand: 1 genes, length ø 1911 bp, gc-content ø 0.495 repeat_region: 152 genes, length ø 990 bp, gc-content ø 0.477 '+'-strand: 75 genes, length ø 1041 bp, gc-content ø 0.476 '-'-strand: 77 genes, length ø 940 bp, gc-content ø 0.478 tRNA: 73 genes, length ø 75 bp, gc-content ø 0.578 '+'-strand: 46 genes, length ø 75 bp, gc-content ø 0.581 '-'-strand: 27 genes, length ø 75 bp, gc-content ø 0.573 variation: 25 genes, length ø 2 bp, gc-content ø 0.688 '+'-strand: 25 genes, length ø 2 bp, gc-content ø 0.688 '-'-strand: 0 genes, length ø 0 bp, gc-content ø 0
COG categories
Amino acid transport and metabolism [E]	375
Carbohydrate transport and metabolism [G]	348
Cell cycle control, mitosis and meiosis [D]	41
Cell motility [N]	127
Cell wall/membrane biogenesis [M]	205
Chromatin structure and dynamics [B]	0
Coenzyme transport and metabolism [H]	139
Cytoskeleton [Z]	0
Defense mechanisms [V]	49
Energy production and conversion [C]	196
Extracellular structures [W]	9
Function unknown [S]	358
General function prediction only [R]	410
Inorganic ion transport and metabolism [P]	262
Intracellular trafficking and secretion [U]	162
Lipid transport and metabolism [I]	90
NOT ANALYZED	337
Nuclear structure [Y]	0
Nucleotide transport and metabolism [F]	71
Posttranslational modification, protein turnover, chaperones [O]	139
RNA processing and modification [A]	1
Replication, recombination and repair [L]	343
Secondary metabolites biosynthesis, transport and catabolism [Q]	80
Signal transduction mechanisms [T]	139
Transcription [K]	252
Translation, ribosomal structure and biogenesis [J]	182
Unclassified [-]	784