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2024-05-04 16:10:28
Summary for Yersinia pestis KIM, KIM.
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chr: chromosome(s), pl: plasmid(s), seg: segment(s)
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 Yersinia pestis KIM, KIM
Genomic elements1 chromosomes(s), 1 circular plasmid(s)
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Genome featuresCDS:
4202 genes, length ø 933 bp, gc-content ø 0.48
 
'+'-strand:
2186 genes, length ø 927 bp, gc-content ø 0.481
 
'-'-strand:
2016 genes, length ø 940 bp, gc-content ø 0.479
 
misc_RNA:
3 genes, length ø 282 bp, gc-content ø 0.516
 
'+'-strand:
1 genes, length ø 364 bp, gc-content ø 0.516
 
'-'-strand:
2 genes, length ø 242 bp, gc-content ø 0.516
 
misc_feature:
6 genes, length ø 373 bp, gc-content ø 0.478
 
'+'-strand:
6 genes, length ø 373 bp, gc-content ø 0.478
 
'-'-strand:
0 genes, length ø 0 bp, gc-content ø 0
 
pseudo:
54 genes, length ø 1824 bp, gc-content ø 0.487
 
'+'-strand:
30 genes, length ø 1895 bp, gc-content ø 0.484
 
'-'-strand:
24 genes, length ø 1737 bp, gc-content ø 0.491
 
rRNA:
24 genes, length ø 1362 bp, gc-content ø 0.569
 
'+'-strand:
18 genes, length ø 1304 bp, gc-content ø 0.571
 
'-'-strand:
6 genes, length ø 1537 bp, gc-content ø 0.563
 
rep_origin:
2 genes, length ø 1092 bp, gc-content ø 0.45
 
'+'-strand:
1 genes, length ø 274 bp, gc-content ø 0.405
 
'-'-strand:
1 genes, length ø 1911 bp, gc-content ø 0.495
 
repeat_region:
152 genes, length ø 990 bp, gc-content ø 0.477
 
'+'-strand:
75 genes, length ø 1041 bp, gc-content ø 0.476
 
'-'-strand:
77 genes, length ø 940 bp, gc-content ø 0.478
 
tRNA:
73 genes, length ø 75 bp, gc-content ø 0.578
 
'+'-strand:
46 genes, length ø 75 bp, gc-content ø 0.581
 
'-'-strand:
27 genes, length ø 75 bp, gc-content ø 0.573
 
variation:
25 genes, length ø 2 bp, gc-content ø 0.688
 
'+'-strand:
25 genes, length ø 2 bp, gc-content ø 0.688
 
'-'-strand:
0 genes, length ø 0 bp, gc-content ø 0
 
COG categories 
Amino acid transport and metabolism [E]375
Carbohydrate transport and metabolism [G]348
Cell cycle control, mitosis and meiosis [D]41
Cell motility [N]127
Cell wall/membrane biogenesis [M]205
Chromatin structure and dynamics [B]0
Coenzyme transport and metabolism [H]139
Cytoskeleton [Z]0
Defense mechanisms [V]49
Energy production and conversion [C]196
Extracellular structures [W]9
Function unknown [S]358
General function prediction only [R]410
Inorganic ion transport and metabolism [P]262
Intracellular trafficking and secretion [U]162
Lipid transport and metabolism [I]90
NOT ANALYZED337
Nuclear structure [Y]0
Nucleotide transport and metabolism [F]71
Posttranslational modification, protein turnover, chaperones [O]139
RNA processing and modification [A]1
Replication, recombination and repair [L]343
Secondary metabolites biosynthesis, transport and catabolism [Q]80
Signal transduction mechanisms [T]139
Transcription [K]252
Translation, ribosomal structure and biogenesis [J]182
Unclassified [-]784