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2024-05-18 09:52:03
Summary for Salmonella enterica subsp. enterica serovar Typhi str. CT18, CT18.
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chr: chromosome(s), pl: plasmid(s), seg: segment(s)
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 Salmonella enterica subsp. enterica serovar Typhi str. CT18, CT18
Genomic elements1 chromosomes(s), 2 circular plasmid(s)
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chromosome
length: 4809037 bp
gc-content (intragenic): 0.539788 %

 
CDS:
4395 genes, length ø 909 bp, gc-content ø 0.521
 
'+'-strand:
2214 genes, length ø 909 bp, gc-content ø 0.522
 
'-'-strand:
2181 genes, length ø 910 bp, gc-content ø 0.52
 
RBS:
501 genes, length ø 5 bp, gc-content ø 0.629
 
'+'-strand:
196 genes, length ø 5 bp, gc-content ø 0.604
 
'-'-strand:
305 genes, length ø 5 bp, gc-content ø 0.645
 
misc_RNA:
9 genes, length ø 250 bp, gc-content ø 0.493
 
'+'-strand:
5 genes, length ø 265 bp, gc-content ø 0.485
 
'-'-strand:
4 genes, length ø 230 bp, gc-content ø 0.504
 
misc_feature:
4614 genes, length ø 452 bp, gc-content ø 0.549
 
'+'-strand:
2276 genes, length ø 542 bp, gc-content ø 0.549
 
'-'-strand:
2338 genes, length ø 365 bp, gc-content ø 0.549
 
pseudo:
576 genes, length ø 1138 bp, gc-content ø 0.52
 
'+'-strand:
332 genes, length ø 1136 bp, gc-content ø 0.519
 
'-'-strand:
244 genes, length ø 1142 bp, gc-content ø 0.52
 
rRNA:
23 genes, length ø 1430 bp, gc-content ø 0.576
 
'+'-strand:
7 genes, length ø 1350 bp, gc-content ø 0.581
 
'-'-strand:
16 genes, length ø 1466 bp, gc-content ø 0.575
 
repeat_region:
6 genes, length ø 4917 bp, gc-content ø 0.521
 
'+'-strand:
3 genes, length ø 7689 bp, gc-content ø 0.554
 
'-'-strand:
3 genes, length ø 2145 bp, gc-content ø 0.488
 
repeat_unit:
31 genes, length ø 474 bp, gc-content ø 0.479
 
'+'-strand:
16 genes, length ø 565 bp, gc-content ø 0.485
 
'-'-strand:
15 genes, length ø 377 bp, gc-content ø 0.472
 
tRNA:
79 genes, length ø 78 bp, gc-content ø 0.587
 
'+'-strand:
29 genes, length ø 77 bp, gc-content ø 0.58
 
'-'-strand:
50 genes, length ø 79 bp, gc-content ø 0.591
 
variation:
2 genes, length ø 2477 bp, gc-content ø 0.481
 
'+'-strand:
2 genes, length ø 2477 bp, gc-content ø 0.481
 
'-'-strand:
0 genes, length ø 0 bp, gc-content ø 0
Confidence [min/max/avg]: //
Coverage [min/max/avg]: //
 

 
pHCM1
length: 218160 bp
gc-content (intragenic): 0.521969 %

 
CDS:
235 genes, length ø 740 bp, gc-content ø 0.483
 
'+'-strand:
132 genes, length ø 813 bp, gc-content ø 0.478
 
'-'-strand:
103 genes, length ø 647 bp, gc-content ø 0.489
 
RBS:
110 genes, length ø 4 bp, gc-content ø 0.601
 
'+'-strand:
55 genes, length ø 4 bp, gc-content ø 0.617
 
'-'-strand:
55 genes, length ø 5 bp, gc-content ø 0.585
 
misc_feature:
9 genes, length ø 262 bp, gc-content ø 0.205
 
'+'-strand:
4 genes, length ø 459 bp, gc-content ø 0.229
 
'-'-strand:
5 genes, length ø 105 bp, gc-content ø 0.186
 
pseudo:
20 genes, length ø 1006 bp, gc-content ø 0.52
 
'+'-strand:
12 genes, length ø 771 bp, gc-content ø 0.493
 
'-'-strand:
8 genes, length ø 1359 bp, gc-content ø 0.561
 
repeat_region:
47 genes, length ø 710 bp, gc-content ø 0.534
 
'+'-strand:
31 genes, length ø 779 bp, gc-content ø 0.496
 
'-'-strand:
16 genes, length ø 578 bp, gc-content ø 0.609
 

 
pHCM2
length: 106516 bp
gc-content (intragenic): 0.507231 %

 
CDS:
128 genes, length ø 720 bp, gc-content ø 0.508
 
'+'-strand:
18 genes, length ø 561 bp, gc-content ø 0.462
 
'-'-strand:
110 genes, length ø 746 bp, gc-content ø 0.515
 
RBS:
71 genes, length ø 5 bp, gc-content ø 0.553
 
'+'-strand:
6 genes, length ø 5 bp, gc-content ø 0.498
 
'-'-strand:
65 genes, length ø 5 bp, gc-content ø 0.558
 
misc_recomb:
8 genes, length ø 57 bp, gc-content ø 0.333
 
'+'-strand:
8 genes, length ø 57 bp, gc-content ø 0.333
 
'-'-strand:
0 genes, length ø 0 bp, gc-content ø 0
Confidence [min/max/avg]: //
Coverage [min/max/avg]: //
 
repeat_region:
35 genes, length ø 23 bp, gc-content ø 0.458
 
'+'-strand:
22 genes, length ø 23 bp, gc-content ø 0.459
 
'-'-strand:
13 genes, length ø 24 bp, gc-content ø 0.458
 
stem_loop:
2 genes, length ø 63 bp, gc-content ø 0.315
 
'+'-strand:
2 genes, length ø 63 bp, gc-content ø 0.315
 
'-'-strand:
0 genes, length ø 0 bp, gc-content ø 0
Confidence [min/max/avg]: //
Coverage [min/max/avg]: //
 
tRNA:
1 genes, length ø 75 bp, gc-content ø 0.546
 
'+'-strand:
0 genes, length ø 0 bp, gc-content ø 0
Confidence [min/max/avg]: //
Coverage [min/max/avg]: //
 
'-'-strand:
1 genes, length ø 75 bp, gc-content ø 0.546
 

 
Genome featuresCDS:
4758 genes, length ø 896 bp, gc-content ø 0.519
 
'+'-strand:
2364 genes, length ø 901 bp, gc-content ø 0.519
 
'-'-strand:
2394 genes, length ø 891 bp, gc-content ø 0.519
 
RBS:
682 genes, length ø 5 bp, gc-content ø 0.616
 
'+'-strand:
257 genes, length ø 5 bp, gc-content ø 0.604
 
'-'-strand:
425 genes, length ø 5 bp, gc-content ø 0.624
 
misc_RNA:
9 genes, length ø 250 bp, gc-content ø 0.493
 
'+'-strand:
5 genes, length ø 265 bp, gc-content ø 0.485
 
'-'-strand:
4 genes, length ø 230 bp, gc-content ø 0.504
 
misc_feature:
4623 genes, length ø 452 bp, gc-content ø 0.548
 
'+'-strand:
2280 genes, length ø 542 bp, gc-content ø 0.548
 
'-'-strand:
2343 genes, length ø 364 bp, gc-content ø 0.548
 
misc_recomb:
8 genes, length ø 57 bp, gc-content ø 0.333
 
'+'-strand:
8 genes, length ø 57 bp, gc-content ø 0.333
 
'-'-strand:
0 genes, length ø 0 bp, gc-content ø 0
 
pseudo:
596 genes, length ø 1134 bp, gc-content ø 0.52
 
'+'-strand:
344 genes, length ø 1123 bp, gc-content ø 0.518
 
'-'-strand:
252 genes, length ø 1149 bp, gc-content ø 0.522
 
rRNA:
23 genes, length ø 1430 bp, gc-content ø 0.576
 
'+'-strand:
7 genes, length ø 1350 bp, gc-content ø 0.581
 
'-'-strand:
16 genes, length ø 1466 bp, gc-content ø 0.575
 
repeat_region:
88 genes, length ø 724 bp, gc-content ø 0.503
 
'+'-strand:
56 genes, length ø 852 bp, gc-content ø 0.484
 
'-'-strand:
32 genes, length ø 500 bp, gc-content ø 0.536
 
repeat_unit:
31 genes, length ø 474 bp, gc-content ø 0.479
 
'+'-strand:
16 genes, length ø 565 bp, gc-content ø 0.485
 
'-'-strand:
15 genes, length ø 377 bp, gc-content ø 0.472
 
stem_loop:
2 genes, length ø 63 bp, gc-content ø 0.315
 
'+'-strand:
2 genes, length ø 63 bp, gc-content ø 0.315
 
'-'-strand:
0 genes, length ø 0 bp, gc-content ø 0
 
tRNA:
80 genes, length ø 78 bp, gc-content ø 0.586
 
'+'-strand:
29 genes, length ø 77 bp, gc-content ø 0.58
 
'-'-strand:
51 genes, length ø 78 bp, gc-content ø 0.59
 
variation:
2 genes, length ø 2477 bp, gc-content ø 0.481
 
'+'-strand:
2 genes, length ø 2477 bp, gc-content ø 0.481
 
'-'-strand:
0 genes, length ø 0 bp, gc-content ø 0
 
COG categories 
Amino acid transport and metabolism [E]420
Carbohydrate transport and metabolism [G]377
Cell cycle control, mitosis and meiosis [D]50
Cell motility [N]114
Cell wall/membrane biogenesis [M]243
Chromatin structure and dynamics [B]1
Coenzyme transport and metabolism [H]170
Cytoskeleton [Z]0
Defense mechanisms [V]57
Energy production and conversion [C]285
Extracellular structures [W]3
Function unknown [S]339
General function prediction only [R]566
Inorganic ion transport and metabolism [P]263
Intracellular trafficking and secretion [U]131
Lipid transport and metabolism [I]95
NOT ANALYZED6140
Nuclear structure [Y]0
Nucleotide transport and metabolism [F]84
Posttranslational modification, protein turnover, chaperones [O]181
RNA processing and modification [A]1
Replication, recombination and repair [L]254
Secondary metabolites biosynthesis, transport and catabolism [Q]79
Signal transduction mechanisms [T]185
Transcription [K]342
Translation, ribosomal structure and biogenesis [J]197
Unclassified [-]993