Salmonella enterica subsp. enterica serovar Typhi str. CT18, CT18 | |
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Genomic elements | 1 chromosomes(s), 2 circular plasmid(s) Show details |
Genome features | CDS: 4758 genes, length ø 896 bp, gc-content ø 0.519 '+'-strand: 2364 genes, length ø 901 bp, gc-content ø 0.519 '-'-strand: 2394 genes, length ø 891 bp, gc-content ø 0.519 RBS: 682 genes, length ø 5 bp, gc-content ø 0.616 '+'-strand: 257 genes, length ø 5 bp, gc-content ø 0.604 '-'-strand: 425 genes, length ø 5 bp, gc-content ø 0.624 misc_RNA: 9 genes, length ø 250 bp, gc-content ø 0.493 '+'-strand: 5 genes, length ø 265 bp, gc-content ø 0.485 '-'-strand: 4 genes, length ø 230 bp, gc-content ø 0.504 misc_feature: 4623 genes, length ø 452 bp, gc-content ø 0.548 '+'-strand: 2280 genes, length ø 542 bp, gc-content ø 0.548 '-'-strand: 2343 genes, length ø 364 bp, gc-content ø 0.548 misc_recomb: 8 genes, length ø 57 bp, gc-content ø 0.333 '+'-strand: 8 genes, length ø 57 bp, gc-content ø 0.333 '-'-strand: 0 genes, length ø 0 bp, gc-content ø 0 pseudo: 596 genes, length ø 1134 bp, gc-content ø 0.52 '+'-strand: 344 genes, length ø 1123 bp, gc-content ø 0.518 '-'-strand: 252 genes, length ø 1149 bp, gc-content ø 0.522 rRNA: 23 genes, length ø 1430 bp, gc-content ø 0.576 '+'-strand: 7 genes, length ø 1350 bp, gc-content ø 0.581 '-'-strand: 16 genes, length ø 1466 bp, gc-content ø 0.575 repeat_region: 88 genes, length ø 724 bp, gc-content ø 0.503 '+'-strand: 56 genes, length ø 852 bp, gc-content ø 0.484 '-'-strand: 32 genes, length ø 500 bp, gc-content ø 0.536 repeat_unit: 31 genes, length ø 474 bp, gc-content ø 0.479 '+'-strand: 16 genes, length ø 565 bp, gc-content ø 0.485 '-'-strand: 15 genes, length ø 377 bp, gc-content ø 0.472 stem_loop: 2 genes, length ø 63 bp, gc-content ø 0.315 '+'-strand: 2 genes, length ø 63 bp, gc-content ø 0.315 '-'-strand: 0 genes, length ø 0 bp, gc-content ø 0 tRNA: 80 genes, length ø 78 bp, gc-content ø 0.586 '+'-strand: 29 genes, length ø 77 bp, gc-content ø 0.58 '-'-strand: 51 genes, length ø 78 bp, gc-content ø 0.59 variation: 2 genes, length ø 2477 bp, gc-content ø 0.481 '+'-strand: 2 genes, length ø 2477 bp, gc-content ø 0.481 '-'-strand: 0 genes, length ø 0 bp, gc-content ø 0 |
COG categories | |
Amino acid transport and metabolism [E] | 420 |
Carbohydrate transport and metabolism [G] | 377 |
Cell cycle control, mitosis and meiosis [D] | 50 |
Cell motility [N] | 114 |
Cell wall/membrane biogenesis [M] | 243 |
Chromatin structure and dynamics [B] | 1 |
Coenzyme transport and metabolism [H] | 170 |
Cytoskeleton [Z] | 0 |
Defense mechanisms [V] | 57 |
Energy production and conversion [C] | 285 |
Extracellular structures [W] | 3 |
Function unknown [S] | 339 |
General function prediction only [R] | 566 |
Inorganic ion transport and metabolism [P] | 263 |
Intracellular trafficking and secretion [U] | 131 |
Lipid transport and metabolism [I] | 95 |
NOT ANALYZED | 6140 |
Nuclear structure [Y] | 0 |
Nucleotide transport and metabolism [F] | 84 |
Posttranslational modification, protein turnover, chaperones [O] | 181 |
RNA processing and modification [A] | 1 |
Replication, recombination and repair [L] | 254 |
Secondary metabolites biosynthesis, transport and catabolism [Q] | 79 |
Signal transduction mechanisms [T] | 185 |
Transcription [K] | 342 |
Translation, ribosomal structure and biogenesis [J] | 197 |
Unclassified [-] | 993 |