Escherichia coli O157:H7 EDL933, EDL933 | |
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Genomic elements | 1 chromosomes(s), 1 circular plasmid(s) Hide details chromosome length: 5528445 bp gc-content (intragenic): 0.503384 % CDS: 5324 genes, length ø 909 bp, gc-content ø 0.503 '+'-strand: 2654 genes, length ø 916 bp, gc-content ø 0.504 '-'-strand: 2670 genes, length ø 903 bp, gc-content ø 0.502 misc_RNA: 8 genes, length ø 184 bp, gc-content ø 0.526 '+'-strand: 5 genes, length ø 190 bp, gc-content ø 0.526 '-'-strand: 3 genes, length ø 174 bp, gc-content ø 0.526 misc_feature: 326 genes, length ø 4215 bp, gc-content ø 0.468 '+'-strand: 326 genes, length ø 4215 bp, gc-content ø 0.468 '-'-strand: 0 genes, length ø 0 bp, gc-content ø 0 Confidence [min/max/avg]: // Coverage [min/max/avg]: // rRNA: 22 genes, length ø 1458 bp, gc-content ø 0.571 '+'-strand: 15 genes, length ø 1522 bp, gc-content ø 0.569 '-'-strand: 7 genes, length ø 1323 bp, gc-content ø 0.575 rep_origin: 1 genes, length ø 232 bp, gc-content ø 0.409 '+'-strand: 1 genes, length ø 232 bp, gc-content ø 0.409 '-'-strand: 0 genes, length ø 0 bp, gc-content ø 0 Confidence [min/max/avg]: // Coverage [min/max/avg]: // repeat_region: 1 genes, length ø 2442 bp, gc-content ø 0.567 '+'-strand: 1 genes, length ø 2442 bp, gc-content ø 0.567 '-'-strand: 0 genes, length ø 0 bp, gc-content ø 0 Confidence [min/max/avg]: // Coverage [min/max/avg]: // tRNA: 98 genes, length ø 77 bp, gc-content ø 0.586 '+'-strand: 56 genes, length ø 77 bp, gc-content ø 0.586 '-'-strand: 42 genes, length ø 78 bp, gc-content ø 0.587 pO157 length: 92077 bp gc-content (intragenic): 0.465274 % -10_signal: 3 genes, length ø 6 bp, gc-content ø 0.198 '+'-strand: 3 genes, length ø 6 bp, gc-content ø 0.198 '-'-strand: 0 genes, length ø 0 bp, gc-content ø 0 Confidence [min/max/avg]: // Coverage [min/max/avg]: // -35_signal: 3 genes, length ø 6 bp, gc-content ø 0.388 '+'-strand: 3 genes, length ø 6 bp, gc-content ø 0.388 '-'-strand: 0 genes, length ø 0 bp, gc-content ø 0 Confidence [min/max/avg]: // Coverage [min/max/avg]: // CDS: 99 genes, length ø 810 bp, gc-content ø 0.505 '+'-strand: 80 genes, length ø 896 bp, gc-content ø 0.499 '-'-strand: 19 genes, length ø 447 bp, gc-content ø 0.531 RBS: 5 genes, length ø 6 bp, gc-content ø 0.558 '+'-strand: 5 genes, length ø 6 bp, gc-content ø 0.558 '-'-strand: 0 genes, length ø 0 bp, gc-content ø 0 Confidence [min/max/avg]: // Coverage [min/max/avg]: // misc_RNA: 1 genes, length ø 104 bp, gc-content ø 0.49 '+'-strand: 1 genes, length ø 104 bp, gc-content ø 0.49 '-'-strand: 0 genes, length ø 0 bp, gc-content ø 0 Confidence [min/max/avg]: // Coverage [min/max/avg]: // misc_feature: 9 genes, length ø 138 bp, gc-content ø 0.458 '+'-strand: 6 genes, length ø 130 bp, gc-content ø 0.407 '-'-strand: 3 genes, length ø 153 bp, gc-content ø 0.56 promoter: 38 genes, length ø 29 bp, gc-content ø 0.365 '+'-strand: 34 genes, length ø 29 bp, gc-content ø 0.349 '-'-strand: 4 genes, length ø 29 bp, gc-content ø 0.5 rep_origin: 1 genes, length ø 149 bp, gc-content ø 0.355 '+'-strand: 1 genes, length ø 149 bp, gc-content ø 0.355 '-'-strand: 0 genes, length ø 0 bp, gc-content ø 0 Confidence [min/max/avg]: // Coverage [min/max/avg]: // repeat_region: 27 genes, length ø 339 bp, gc-content ø 0.445 '+'-strand: 20 genes, length ø 418 bp, gc-content ø 0.476 '-'-strand: 7 genes, length ø 115 bp, gc-content ø 0.358 terminator: 1 genes, length ø 25 bp, gc-content ø 0.56 '+'-strand: 1 genes, length ø 25 bp, gc-content ø 0.56 '-'-strand: 0 genes, length ø 0 bp, gc-content ø 0 Confidence [min/max/avg]: // Coverage [min/max/avg]: // |
Genome features | -10_signal: 3 genes, length ø 6 bp, gc-content ø 0.198 '+'-strand: 3 genes, length ø 6 bp, gc-content ø 0.198 '-'-strand: 0 genes, length ø 0 bp, gc-content ø 0 -35_signal: 3 genes, length ø 6 bp, gc-content ø 0.388 '+'-strand: 3 genes, length ø 6 bp, gc-content ø 0.388 '-'-strand: 0 genes, length ø 0 bp, gc-content ø 0 CDS: 5423 genes, length ø 907 bp, gc-content ø 0.503 '+'-strand: 2734 genes, length ø 915 bp, gc-content ø 0.504 '-'-strand: 2689 genes, length ø 900 bp, gc-content ø 0.502 RBS: 5 genes, length ø 6 bp, gc-content ø 0.558 '+'-strand: 5 genes, length ø 6 bp, gc-content ø 0.558 '-'-strand: 0 genes, length ø 0 bp, gc-content ø 0 misc_RNA: 9 genes, length ø 175 bp, gc-content ø 0.522 '+'-strand: 6 genes, length ø 175 bp, gc-content ø 0.52 '-'-strand: 3 genes, length ø 174 bp, gc-content ø 0.526 misc_feature: 335 genes, length ø 4106 bp, gc-content ø 0.468 '+'-strand: 332 genes, length ø 4142 bp, gc-content ø 0.467 '-'-strand: 3 genes, length ø 153 bp, gc-content ø 0.56 promoter: 38 genes, length ø 29 bp, gc-content ø 0.365 '+'-strand: 34 genes, length ø 29 bp, gc-content ø 0.349 '-'-strand: 4 genes, length ø 29 bp, gc-content ø 0.5 rRNA: 22 genes, length ø 1458 bp, gc-content ø 0.571 '+'-strand: 15 genes, length ø 1522 bp, gc-content ø 0.569 '-'-strand: 7 genes, length ø 1323 bp, gc-content ø 0.575 rep_origin: 2 genes, length ø 190 bp, gc-content ø 0.382 '+'-strand: 2 genes, length ø 190 bp, gc-content ø 0.382 '-'-strand: 0 genes, length ø 0 bp, gc-content ø 0 repeat_region: 28 genes, length ø 414 bp, gc-content ø 0.45 '+'-strand: 21 genes, length ø 514 bp, gc-content ø 0.48 '-'-strand: 7 genes, length ø 115 bp, gc-content ø 0.358 tRNA: 98 genes, length ø 77 bp, gc-content ø 0.586 '+'-strand: 56 genes, length ø 77 bp, gc-content ø 0.586 '-'-strand: 42 genes, length ø 78 bp, gc-content ø 0.587 terminator: 1 genes, length ø 25 bp, gc-content ø 0.56 '+'-strand: 1 genes, length ø 25 bp, gc-content ø 0.56 '-'-strand: 0 genes, length ø 0 bp, gc-content ø 0 |
COG categories | |
Amino acid transport and metabolism [E] | 456 |
Carbohydrate transport and metabolism [G] | 414 |
Cell cycle control, mitosis and meiosis [D] | 52 |
Cell motility [N] | 142 |
Cell wall/membrane biogenesis [M] | 267 |
Chromatin structure and dynamics [B] | 0 |
Coenzyme transport and metabolism [H] | 156 |
Cytoskeleton [Z] | 0 |
Defense mechanisms [V] | 62 |
Energy production and conversion [C] | 307 |
Extracellular structures [W] | 8 |
Function unknown [S] | 422 |
General function prediction only [R] | 609 |
Inorganic ion transport and metabolism [P] | 334 |
Intracellular trafficking and secretion [U] | 182 |
Lipid transport and metabolism [I] | 117 |
NOT ANALYZED | 544 |
Nuclear structure [Y] | 0 |
Nucleotide transport and metabolism [F] | 92 |
Posttranslational modification, protein turnover, chaperones [O] | 173 |
RNA processing and modification [A] | 2 |
Replication, recombination and repair [L] | 373 |
Secondary metabolites biosynthesis, transport and catabolism [Q] | 87 |
Signal transduction mechanisms [T] | 210 |
Transcription [K] | 360 |
Translation, ribosomal structure and biogenesis [J] | 190 |
Unclassified [-] | 1155 |