TitleGenColors Logo
spacer
Home spacerGenomes
spacerMethods
spacerDocumentation spacerContactspacer spacerLeibniz FLI
spacer
QuickSearch
2024-05-04 13:20:58
Summary for Escherichia coli O157:H7 EDL933, EDL933.
Add a genome
Remove a genome
 
chr: chromosome(s), pl: plasmid(s), seg: segment(s)
Free access

 

 Escherichia coli O157:H7 EDL933, EDL933
Genomic elements1 chromosomes(s), 1 circular plasmid(s)
Show details
 
Genome features-10_signal:
3 genes, length ø 6 bp, gc-content ø 0.198
 
'+'-strand:
3 genes, length ø 6 bp, gc-content ø 0.198
 
'-'-strand:
0 genes, length ø 0 bp, gc-content ø 0
 
-35_signal:
3 genes, length ø 6 bp, gc-content ø 0.388
 
'+'-strand:
3 genes, length ø 6 bp, gc-content ø 0.388
 
'-'-strand:
0 genes, length ø 0 bp, gc-content ø 0
 
CDS:
5423 genes, length ø 907 bp, gc-content ø 0.503
 
'+'-strand:
2734 genes, length ø 915 bp, gc-content ø 0.504
 
'-'-strand:
2689 genes, length ø 900 bp, gc-content ø 0.502
 
RBS:
5 genes, length ø 6 bp, gc-content ø 0.558
 
'+'-strand:
5 genes, length ø 6 bp, gc-content ø 0.558
 
'-'-strand:
0 genes, length ø 0 bp, gc-content ø 0
 
misc_RNA:
9 genes, length ø 175 bp, gc-content ø 0.522
 
'+'-strand:
6 genes, length ø 175 bp, gc-content ø 0.52
 
'-'-strand:
3 genes, length ø 174 bp, gc-content ø 0.526
 
misc_feature:
335 genes, length ø 4106 bp, gc-content ø 0.468
 
'+'-strand:
332 genes, length ø 4142 bp, gc-content ø 0.467
 
'-'-strand:
3 genes, length ø 153 bp, gc-content ø 0.56
 
promoter:
38 genes, length ø 29 bp, gc-content ø 0.365
 
'+'-strand:
34 genes, length ø 29 bp, gc-content ø 0.349
 
'-'-strand:
4 genes, length ø 29 bp, gc-content ø 0.5
 
rRNA:
22 genes, length ø 1458 bp, gc-content ø 0.571
 
'+'-strand:
15 genes, length ø 1522 bp, gc-content ø 0.569
 
'-'-strand:
7 genes, length ø 1323 bp, gc-content ø 0.575
 
rep_origin:
2 genes, length ø 190 bp, gc-content ø 0.382
 
'+'-strand:
2 genes, length ø 190 bp, gc-content ø 0.382
 
'-'-strand:
0 genes, length ø 0 bp, gc-content ø 0
 
repeat_region:
28 genes, length ø 414 bp, gc-content ø 0.45
 
'+'-strand:
21 genes, length ø 514 bp, gc-content ø 0.48
 
'-'-strand:
7 genes, length ø 115 bp, gc-content ø 0.358
 
tRNA:
98 genes, length ø 77 bp, gc-content ø 0.586
 
'+'-strand:
56 genes, length ø 77 bp, gc-content ø 0.586
 
'-'-strand:
42 genes, length ø 78 bp, gc-content ø 0.587
 
terminator:
1 genes, length ø 25 bp, gc-content ø 0.56
 
'+'-strand:
1 genes, length ø 25 bp, gc-content ø 0.56
 
'-'-strand:
0 genes, length ø 0 bp, gc-content ø 0
 
COG categories 
Amino acid transport and metabolism [E]456
Carbohydrate transport and metabolism [G]414
Cell cycle control, mitosis and meiosis [D]52
Cell motility [N]142
Cell wall/membrane biogenesis [M]267
Chromatin structure and dynamics [B]0
Coenzyme transport and metabolism [H]156
Cytoskeleton [Z]0
Defense mechanisms [V]62
Energy production and conversion [C]307
Extracellular structures [W]8
Function unknown [S]422
General function prediction only [R]609
Inorganic ion transport and metabolism [P]334
Intracellular trafficking and secretion [U]182
Lipid transport and metabolism [I]117
NOT ANALYZED544
Nuclear structure [Y]0
Nucleotide transport and metabolism [F]92
Posttranslational modification, protein turnover, chaperones [O]173
RNA processing and modification [A]2
Replication, recombination and repair [L]373
Secondary metabolites biosynthesis, transport and catabolism [Q]87
Signal transduction mechanisms [T]210
Transcription [K]360
Translation, ribosomal structure and biogenesis [J]190
Unclassified [-]1155