Escherichia coli O157:H7 str. Sakai, Sakai | |
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Genomic elements | 1 chromosomes(s), 2 circular plasmid(s) Hide details chromosome length: 5498450 bp gc-content (intragenic): 0.507812 % CDS: 5253 genes, length ø 904 bp, gc-content ø 0.506 '+'-strand: 2642 genes, length ø 908 bp, gc-content ø 0.507 '-'-strand: 2611 genes, length ø 900 bp, gc-content ø 0.504 misc_RNA: 14 genes, length ø 158 bp, gc-content ø 0.511 '+'-strand: 8 genes, length ø 146 bp, gc-content ø 0.505 '-'-strand: 6 genes, length ø 174 bp, gc-content ø 0.518 misc_feature: 82 genes, length ø 1207 bp, gc-content ø 0.492 '+'-strand: 40 genes, length ø 1198 bp, gc-content ø 0.474 '-'-strand: 42 genes, length ø 1216 bp, gc-content ø 0.509 operon: 7 genes, length ø 5135 bp, gc-content ø 0.531 '+'-strand: 5 genes, length ø 5117 bp, gc-content ø 0.531 '-'-strand: 2 genes, length ø 5179 bp, gc-content ø 0.53 pseudo: 3 genes, length ø 78 bp, gc-content ø 0.611 '+'-strand: 2 genes, length ø 77 bp, gc-content ø 0.61 '-'-strand: 1 genes, length ø 80 bp, gc-content ø 0.612 rRNA: 22 genes, length ø 1458 bp, gc-content ø 0.572 '+'-strand: 15 genes, length ø 1522 bp, gc-content ø 0.57 '-'-strand: 7 genes, length ø 1321 bp, gc-content ø 0.576 repeat_region: 80 genes, length ø 1144 bp, gc-content ø 0.498 '+'-strand: 46 genes, length ø 1186 bp, gc-content ø 0.492 '-'-strand: 34 genes, length ø 1088 bp, gc-content ø 0.507 tRNA: 102 genes, length ø 78 bp, gc-content ø 0.587 '+'-strand: 59 genes, length ø 77 bp, gc-content ø 0.586 '-'-strand: 43 genes, length ø 79 bp, gc-content ø 0.588 pO157 length: 92721 bp gc-content (intragenic): 0.511332 % CDS: 85 genes, length ø 858 bp, gc-content ø 0.51 '+'-strand: 73 genes, length ø 916 bp, gc-content ø 0.504 '-'-strand: 12 genes, length ø 506 bp, gc-content ø 0.546 misc_feature: 4 genes, length ø 23691 bp, gc-content ø 0.525 '+'-strand: 3 genes, length ø 31461 bp, gc-content ø 0.531 '-'-strand: 1 genes, length ø 381 bp, gc-content ø 0.509 pOSAK1 length: 3306 bp gc-content (intragenic): 0.397383 % CDS: 3 genes, length ø 582 bp, gc-content ø 0.385 '+'-strand: 1 genes, length ø 324 bp, gc-content ø 0.515 '-'-strand: 2 genes, length ø 711 bp, gc-content ø 0.32 misc_feature: 1 genes, length ø 3306 bp, gc-content ø 0.434 '+'-strand: 1 genes, length ø 3306 bp, gc-content ø 0.434 '-'-strand: 0 genes, length ø 0 bp, gc-content ø 0 Confidence [min/max/avg]: // Coverage [min/max/avg]: // |
Genome features | CDS: 5341 genes, length ø 903 bp, gc-content ø 0.506 '+'-strand: 2716 genes, length ø 908 bp, gc-content ø 0.507 '-'-strand: 2625 genes, length ø 898 bp, gc-content ø 0.504 misc_RNA: 14 genes, length ø 158 bp, gc-content ø 0.511 '+'-strand: 8 genes, length ø 146 bp, gc-content ø 0.505 '-'-strand: 6 genes, length ø 174 bp, gc-content ø 0.518 misc_feature: 87 genes, length ø 2265 bp, gc-content ø 0.493 '+'-strand: 44 genes, length ø 3310 bp, gc-content ø 0.477 '-'-strand: 43 genes, length ø 1196 bp, gc-content ø 0.509 operon: 7 genes, length ø 5135 bp, gc-content ø 0.531 '+'-strand: 5 genes, length ø 5117 bp, gc-content ø 0.531 '-'-strand: 2 genes, length ø 5179 bp, gc-content ø 0.53 pseudo: 3 genes, length ø 78 bp, gc-content ø 0.611 '+'-strand: 2 genes, length ø 77 bp, gc-content ø 0.61 '-'-strand: 1 genes, length ø 80 bp, gc-content ø 0.612 rRNA: 22 genes, length ø 1458 bp, gc-content ø 0.572 '+'-strand: 15 genes, length ø 1522 bp, gc-content ø 0.57 '-'-strand: 7 genes, length ø 1321 bp, gc-content ø 0.576 repeat_region: 80 genes, length ø 1144 bp, gc-content ø 0.498 '+'-strand: 46 genes, length ø 1186 bp, gc-content ø 0.492 '-'-strand: 34 genes, length ø 1088 bp, gc-content ø 0.507 tRNA: 102 genes, length ø 78 bp, gc-content ø 0.587 '+'-strand: 59 genes, length ø 77 bp, gc-content ø 0.586 '-'-strand: 43 genes, length ø 79 bp, gc-content ø 0.588 |
COG categories | |
Amino acid transport and metabolism [E] | 446 |
Carbohydrate transport and metabolism [G] | 398 |
Cell cycle control, mitosis and meiosis [D] | 51 |
Cell motility [N] | 139 |
Cell wall/membrane biogenesis [M] | 254 |
Chromatin structure and dynamics [B] | 0 |
Coenzyme transport and metabolism [H] | 156 |
Cytoskeleton [Z] | 0 |
Defense mechanisms [V] | 55 |
Energy production and conversion [C] | 303 |
Extracellular structures [W] | 8 |
Function unknown [S] | 427 |
General function prediction only [R] | 609 |
Inorganic ion transport and metabolism [P] | 326 |
Intracellular trafficking and secretion [U] | 180 |
Lipid transport and metabolism [I] | 116 |
NOT ANALYZED | 311 |
Nuclear structure [Y] | 0 |
Nucleotide transport and metabolism [F] | 90 |
Posttranslational modification, protein turnover, chaperones [O] | 173 |
RNA processing and modification [A] | 2 |
Replication, recombination and repair [L] | 348 |
Secondary metabolites biosynthesis, transport and catabolism [Q] | 86 |
Signal transduction mechanisms [T] | 209 |
Transcription [K] | 358 |
Translation, ribosomal structure and biogenesis [J] | 191 |
Unclassified [-] | 1160 |