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2026-03-10 04:18:38
Summary for Escherichia coli O157:H7 str. Sakai, Sakai.
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chr: chromosome(s), pl: plasmid(s), seg: segment(s)
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 Escherichia coli O157:H7 str. Sakai, Sakai
Genomic elements1 chromosomes(s), 2 circular plasmid(s)
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chromosome
length: 5498450 bp
gc-content (intragenic): 0.507812 %

 
CDS:
5253 genes, length ø 904 bp, gc-content ø 0.506
 
'+'-strand:
2642 genes, length ø 908 bp, gc-content ø 0.507
 
'-'-strand:
2611 genes, length ø 900 bp, gc-content ø 0.504
 
misc_RNA:
14 genes, length ø 158 bp, gc-content ø 0.511
 
'+'-strand:
8 genes, length ø 146 bp, gc-content ø 0.505
 
'-'-strand:
6 genes, length ø 174 bp, gc-content ø 0.518
 
misc_feature:
82 genes, length ø 1207 bp, gc-content ø 0.492
 
'+'-strand:
40 genes, length ø 1198 bp, gc-content ø 0.474
 
'-'-strand:
42 genes, length ø 1216 bp, gc-content ø 0.509
 
operon:
7 genes, length ø 5135 bp, gc-content ø 0.531
 
'+'-strand:
5 genes, length ø 5117 bp, gc-content ø 0.531
 
'-'-strand:
2 genes, length ø 5179 bp, gc-content ø 0.53
 
pseudo:
3 genes, length ø 78 bp, gc-content ø 0.611
 
'+'-strand:
2 genes, length ø 77 bp, gc-content ø 0.61
 
'-'-strand:
1 genes, length ø 80 bp, gc-content ø 0.612
 
rRNA:
22 genes, length ø 1458 bp, gc-content ø 0.572
 
'+'-strand:
15 genes, length ø 1522 bp, gc-content ø 0.57
 
'-'-strand:
7 genes, length ø 1321 bp, gc-content ø 0.576
 
repeat_region:
80 genes, length ø 1144 bp, gc-content ø 0.498
 
'+'-strand:
46 genes, length ø 1186 bp, gc-content ø 0.492
 
'-'-strand:
34 genes, length ø 1088 bp, gc-content ø 0.507
 
tRNA:
102 genes, length ø 78 bp, gc-content ø 0.587
 
'+'-strand:
59 genes, length ø 77 bp, gc-content ø 0.586
 
'-'-strand:
43 genes, length ø 79 bp, gc-content ø 0.588
 

 
pO157
length: 92721 bp
gc-content (intragenic): 0.511332 %

 
CDS:
85 genes, length ø 858 bp, gc-content ø 0.51
 
'+'-strand:
73 genes, length ø 916 bp, gc-content ø 0.504
 
'-'-strand:
12 genes, length ø 506 bp, gc-content ø 0.546
 
misc_feature:
4 genes, length ø 23691 bp, gc-content ø 0.525
 
'+'-strand:
3 genes, length ø 31461 bp, gc-content ø 0.531
 
'-'-strand:
1 genes, length ø 381 bp, gc-content ø 0.509
 

 
pOSAK1
length: 3306 bp
gc-content (intragenic): 0.397383 %

 
CDS:
3 genes, length ø 582 bp, gc-content ø 0.385
 
'+'-strand:
1 genes, length ø 324 bp, gc-content ø 0.515
 
'-'-strand:
2 genes, length ø 711 bp, gc-content ø 0.32
 
misc_feature:
1 genes, length ø 3306 bp, gc-content ø 0.434
 
'+'-strand:
1 genes, length ø 3306 bp, gc-content ø 0.434
 
'-'-strand:
0 genes, length ø 0 bp, gc-content ø 0
Confidence [min/max/avg]: //
Coverage [min/max/avg]: //
 

 
Genome featuresCDS:
5341 genes, length ø 903 bp, gc-content ø 0.506
 
'+'-strand:
2716 genes, length ø 908 bp, gc-content ø 0.507
 
'-'-strand:
2625 genes, length ø 898 bp, gc-content ø 0.504
 
misc_RNA:
14 genes, length ø 158 bp, gc-content ø 0.511
 
'+'-strand:
8 genes, length ø 146 bp, gc-content ø 0.505
 
'-'-strand:
6 genes, length ø 174 bp, gc-content ø 0.518
 
misc_feature:
87 genes, length ø 2265 bp, gc-content ø 0.493
 
'+'-strand:
44 genes, length ø 3310 bp, gc-content ø 0.477
 
'-'-strand:
43 genes, length ø 1196 bp, gc-content ø 0.509
 
operon:
7 genes, length ø 5135 bp, gc-content ø 0.531
 
'+'-strand:
5 genes, length ø 5117 bp, gc-content ø 0.531
 
'-'-strand:
2 genes, length ø 5179 bp, gc-content ø 0.53
 
pseudo:
3 genes, length ø 78 bp, gc-content ø 0.611
 
'+'-strand:
2 genes, length ø 77 bp, gc-content ø 0.61
 
'-'-strand:
1 genes, length ø 80 bp, gc-content ø 0.612
 
rRNA:
22 genes, length ø 1458 bp, gc-content ø 0.572
 
'+'-strand:
15 genes, length ø 1522 bp, gc-content ø 0.57
 
'-'-strand:
7 genes, length ø 1321 bp, gc-content ø 0.576
 
repeat_region:
80 genes, length ø 1144 bp, gc-content ø 0.498
 
'+'-strand:
46 genes, length ø 1186 bp, gc-content ø 0.492
 
'-'-strand:
34 genes, length ø 1088 bp, gc-content ø 0.507
 
tRNA:
102 genes, length ø 78 bp, gc-content ø 0.587
 
'+'-strand:
59 genes, length ø 77 bp, gc-content ø 0.586
 
'-'-strand:
43 genes, length ø 79 bp, gc-content ø 0.588
 
COG categories 
Amino acid transport and metabolism [E]446
Carbohydrate transport and metabolism [G]398
Cell cycle control, mitosis and meiosis [D]51
Cell motility [N]139
Cell wall/membrane biogenesis [M]254
Chromatin structure and dynamics [B]0
Coenzyme transport and metabolism [H]156
Cytoskeleton [Z]0
Defense mechanisms [V]55
Energy production and conversion [C]303
Extracellular structures [W]8
Function unknown [S]427
General function prediction only [R]609
Inorganic ion transport and metabolism [P]326
Intracellular trafficking and secretion [U]180
Lipid transport and metabolism [I]116
NOT ANALYZED311
Nuclear structure [Y]0
Nucleotide transport and metabolism [F]90
Posttranslational modification, protein turnover, chaperones [O]173
RNA processing and modification [A]2
Replication, recombination and repair [L]348
Secondary metabolites biosynthesis, transport and catabolism [Q]86
Signal transduction mechanisms [T]209
Transcription [K]358
Translation, ribosomal structure and biogenesis [J]191
Unclassified [-]1160