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2024-05-18 09:52:04

Gene list

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COG category: Intracellular trafficking and secretion
Organism: Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150, ATCC 9150

Number of genes found: 125

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Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150, ATCC 9150
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA SPA4075 putative type-I secretion proteinchromosome CDS4234784 1320 + 0.366667
NA SPA2549 putative type I secretion proteinchromosome CDS2656921 1410 + 0.569504
NA SPA4074 putative integral membrane proteinchromosome CDS4233406 1389 + 0.37077
NA SPA2448 probable secreted proteinchromosome CDS2545075 408 + 0.470588
bcfA SPA0021 fimbrial subunitchromosome CDS24462 543 + 0.521179
bcfB SPA0022 fimbrial chaperonechromosome CDS25105 687 + 0.510917
bcfC SPA0023 fimbrial usherchromosome CDS25796 2622 + 0.541571
bcfD SPA0024 fimbrial subunitchromosome CDS28418 1008 + 0.503968
bcfE SPA0025 fimbrial subunitchromosome CDS29426 546 + 0.47619
bcfG SPA0027 fimbrial chaperonechromosome CDS30498 705 + 0.541844
ccmD SPA3666 heme exporter protein D1chromosome CDS3804382 213 - 0.694836
ccmD SPA0613 heme exporter protein D1chromosome CDS693665 213 + 0.694836
clpP SPA2274 ATP-dependent Clp protease proteolytic subunitchromosome CDS2369275 624 - 0.512821
cpxP SPA3903 extracytoplasmic stress protein for protein-mediated toxicitieschromosome CDS4048631 501 + 0.506986
exbB SPA3027 biopolymer transport ExbB proteinchromosome CDS3128769 735 - 0.55102
exbD SPA3026 biopolymer transport ExbD proteinchromosome CDS3128337 426 - 0.504695
ffh SPA2536 signal recognition particle proteinchromosome CDS2634985 1362 - 0.553598
fimA SPA2182 type-1 fimbrial protein, a chain precursorchromosome CDS2269893 558 - 0.544803
fimC SPA2180 fimbrial chaperone proteinchromosome CDS2268549 693 - 0.503608
fimD SPA2179 outer membrane usher protein FimD precursorchromosome CDS2265906 2613 - 0.553387
fimF SPA2177 fimbria-like protein FimF precursorchromosome CDS2264356 519 - 0.55106
fimH SPA2178 FimH protein precursorchromosome CDS2264884 1008 - 0.519841
fimI SPA2181 hypothetical proteinchromosome CDS2269285 534 - 0.546816
flgM SPA1679 negative regulator of flagellin synthesis (anti-sigma factor)chromosome CDS1741536 294 + 0.517007
flgN SPA1680 flagella synthesis protein FlgNchromosome CDS1741834 423 + 0.541371
flhA SPA0955 flagellar biosynthesis proteinchromosome CDS1026785 2079 + 0.563252
flhB SPA0954 flagellar biosynthesis proteinchromosome CDS1025641 1152 + 0.557292
fliE SPA0902 flagellar basal body proteinchromosome CDS982632 315 + 0.568254
fliF SPA0901 flagellar M-ring proteinchromosome CDS980724 1692 - 0.571513
fliH SPA0899 flagellar assembly proteinchromosome CDS979036 708 - 0.608757
fliI SPA0898 flagellum-specific ATP synthasechromosome CDS977666 1371 - 0.600292
fliJ SPA0897 flagellar proteinchromosome CDS977201 444 - 0.513514
fliN SPA0893 flagellar motor switch proteinchromosome CDS973990 414 - 0.543478
fliP SPA0891 flagellar biosynthesis proteinchromosome CDS972876 738 - 0.53794
fliQ SPA0890 flagellar biosynthesis proteinchromosome CDS972597 270 - 0.518519
fliR SPA0889 flagellar biosynthesis proteinchromosome CDS971794 795 - 0.513208
fliS SPA0909 flagellar protein FliSchromosome CDS987705 408 - 0.5
ftsY SPA3422 cell division proteinchromosome CDS3529575 1476 - 0.552168
hofB SPA0147 protein transport protein HofBchromosome CDS169549 1386 - 0.55267
hofC SPA0146 protein transport protein HofCchromosome CDS168357 1203 - 0.54281
hofQ SPA3353 type II secretion system proteinchromosome CDS3448924 1239 - 0.566586
hopD SPA3308 Type III leader peptidasechromosome CDS3403297 468 + 0.525641
invA SPA2754 possible secretory protein (associated with virulence)chromosome CDS2852936 2058 - 0.456268
invG SPA2756 secretory protein (associated with virulence)chromosome CDS2856133 1689 - 0.462996
lepB SPA0283 signal peptidase Ichromosome CDS319912 975 + 0.526154
lspA SPA0048 signal peptidase IIchromosome CDS56655 501 + 0.516966
marC SPA1334 hypothetical proteinchromosome CDS1418052 666 - 0.53003
misL SPA3608 putative autotransported proteinchromosome CDS3742825 2853 + 0.528566
orgB SPA2727 oxygen-regulated invasion proteinchromosome CDS2828343 672 - 0.446429
pilT SPA2962 Type II secretion, ATP-binding, proteinchromosome CDS3069305 981 - 0.579001
ppdB SPA2864 prepilin peptidase dependent protein B precursorchromosome CDS2974440 564 - 0.542553
ppdD SPA0148 prepilin peptidase dependent protein D precursorchromosome CDS170944 438 - 0.541096
prgK SPA2729 pathogenicity 1 island effector proteinchromosome CDS2829542 759 - 0.458498
prlA SPA3286 preprotein translocase SecYchromosome CDS3392414 1332 - 0.494745
safB SPA2463 periplasmic fimbrial chaperone proteinchromosome CDS2562231 741 - 0.476383
safC SPA2462 outer-membrane fimbrial usher proteinchromosome CDS2559697 2511 - 0.544006
secA SPA0138 translocasechromosome CDS160194 2706 + 0.535107
secB SPA3553 export protein SecBchromosome CDS3683982 468 - 0.504274
secD SPA2316 protein export protein SecDchromosome CDS2408869 1815 - 0.547107
secE SPA3985 translocasechromosome CDS4135646 384 + 0.554688
secF SPA2315 protein export protein SecFchromosome CDS2407887 915 - 0.553005
secG SPA3160 protein-export membrane proteinchromosome CDS3269319 333 - 0.510511
sefB SPA4305 fimbrial chaperone proteinchromosome CDS4473323 753 + 0.288181
sefC SPA4306 outer membrane fimbrial usher proteinchromosome CDS4474080 2445 + 0.353783
sipC SPA2742 pathogenicity island 1 effector proteinchromosome CDS2842393 1230 - 0.474797
smf SPA3272 hypothetical proteinchromosome CDS3382067 1125 - 0.537778
sohB SPA1160 putative proteasechromosome CDS1228210 1047 + 0.536772
spaI SPA2752 type III secretion system ATPasechromosome CDS2851213 1296 - 0.543981
spaO SPA2749 type III secretion proteinchromosome CDS2848871 912 - 0.526316
spaP SPA2748 secretory protein (associated with virulence)chromosome CDS2848207 675 - 0.416296
spaQ SPA2747 secretory protein (associated with virulence)chromosome CDS2847921 261 - 0.467433
spaR SPA2746 secretory protein (associated with virulence)chromosome CDS2847126 792 - 0.494949
spaS SPA2745 type III secretion proteinchromosome CDS2846069 1071 - 0.430439
spiA SPA1459 putative outer membrane secretory proteinchromosome CDS1530402 1494 - 0.423025
sppA SPA1549 protease IVchromosome CDS1624074 1857 + 0.557351
spy SPA1536 hypothetical proteinchromosome CDS1609798 486 - 0.5
ssaJ SPA1444 putative pathogenicity island lipoproteinchromosome CDS1521272 750 - 0.422667
ssaN SPA1438 type III secretion system ATPasechromosome CDS1515306 1302 - 0.512289
ssaQ SPA1435 type III secretion proteinchromosome CDS1513622 969 - 0.459236
ssaS SPA1433 putative type III secretion proteinchromosome CDS1512644 267 - 0.423221
ssaT SPA1432 putative type III secretion proteinchromosome CDS1511864 780 - 0.394872
ssaU SPA1431 putative type III secretion proteinchromosome CDS1510809 1059 - 0.396601
ssaV SPA1439 Secretion system apparatus: homology with the LcrD family of proteinschromosome CDS1516597 2046 - 0.465298
stbA SPA2379 probable fimbrial proteinchromosome CDS2479819 537 + 0.476723
stbB SPA2380 fimbrial chaperone proteinchromosome CDS2480417 762 + 0.450131
stbC SPA2381 outer membrane fimbrial usher proteinchromosome CDS2481162 2562 + 0.539422
stbE SPA2383 fimbrial chaperone proteinchromosome CDS2485019 759 + 0.472991
stcA SPA0700 putative fimbrial subunit proteinchromosome CDS783645 534 + 0.395131
stcB SPA0701 putative fimbrial chaperone proteinchromosome CDS784240 681 + 0.396476
stcC SPA0702 putative outer membrane usher proteinchromosome CDS784949 2487 + 0.468034
stdA SPA2897 probable fimbrial proteinchromosome CDS3008709 585 - 0.526496
stdB SPA2896 probable outer membrane fimbrial usher proteinchromosome CDS3006100 2490 - 0.609237
stdC SPA2895 probable fimbrial chaperone proteinchromosome CDS3005316 744 - 0.587366
steB SPA2813 outer membrane usher proteinchromosome CDS2913144 2646 + 0.558201
steC SPA2814 periplasmic fimbrial chaperonechromosome CDS2915802 774 + 0.54522
steF SPA2817 fimbrial subunitchromosome CDS2917583 537 + 0.480447
stfA SPA0201 putative fimbrial subunitchromosome CDS234923 561 + 0.518717
stfD SPA0203 putative periplasmic fimbrial chaperonechromosome CDS238244 753 + 0.535193
stfE SPA0204 putaive minor fimbrial subunitchromosome CDS239015 513 + 0.551657
sthA SPA4405 putative fimbrial proteinchromosome CDS4580651 546 - 0.501832
sthB SPA4404 putative fimbrial chaperone proteinchromosome CDS4579897 684 - 0.459064
sthC SPA4403 putative fimbrial usher proteinchromosome CDS4577314 2538 - 0.471237
sthD SPA4402 putative fimbrial subunitchromosome CDS4576739 558 - 0.5
sthE SPA4401 putative major fimbrial subunitchromosome CDS4575613 1086 - 0.518416
stkA SPA0185 major fimbrial subunitchromosome CDS214375 606 - 0.463696
stkB SPA0184 putative fimbriae; chaparonechromosome CDS213536 753 - 0.463479
stkC SPA0183 outer membrane usher proteinchromosome CDS210871 2598 - 0.515396
stkG SPA0179 putative fimbrial proteinchromosome CDS207989 1062 - 0.503766
tatA SPA3814 twin argininte translocase protein Achromosome CDS3958723 255 + 0.454902
tatB SPA3815 sec-independent translocasechromosome CDS3958981 549 + 0.544627
tatC SPA3816 sec-independent protein translocase proteinchromosome CDS3959532 780 + 0.505128
tatE SPA2102 twin argininte translocase protein Achromosome CDS2187674 204 - 0.490196
tcfC SPA2453 outermembrane fimbrial usher proteinchromosome CDS2549942 2688 - 0.53683
tolB SPA1995 translocation protein TolB precursorchromosome CDS2073264 1293 - 0.559938
tolC SPA3055 outer membrane channel precursor proteinchromosome CDS3159147 1476 + 0.521003
tolQ SPA1998 TolQ proteinchromosome CDS2076346 693 - 0.525253
tolR SPA1997 tolR proteinchromosome CDS2075914 429 - 0.51049
yaiU SPA2350 putative flagellin structural proteinchromosome CDS2444939 2946 - 0.462661
yajC SPA2317 preprotein translocase subunit YajCchromosome CDS2410744 333 - 0.51952
ybbJ SPA2222 hypothetical proteinchromosome CDS2311640 453 + 0.598234
ychE SPA1130 hypothetical proteinchromosome CDS1199680 648 + 0.50463
yidC SPA3686 inner membrane protein translocase component YidCchromosome CDS3828376 1647 + 0.541591
yohG SPA0679 putative lipoproteinchromosome CDS760997 1437 + 0.5762
yrfC SPA3356 hypothetical proteinchromosome CDS3450925 540 - 0.587037
yscR SPA1434 putative type III secretion proteinchromosome CDS1512907 648 - 0.429012