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2024-05-18 13:41:34

Gene list

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COG category: Intracellular trafficking and secretion
Organism: Shigella flexneri 2a str. 301, 301

Number of genes found: 107

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Shigella flexneri 2a str. 301, 301
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA SF1157 hypothetical proteinchromosome CDS1201042 2322 + 0.472007
NA SF2224 hypothetical proteinchromosome CDS2251317 357 - 0.498599
NA SF2223 putative enzymechromosome CDS2250147 1071 - 0.556489
NA SF2991 outer membrane fluffing proteinchromosome CDS3087470 3129 + 0.578779
NA SF3804 similar to serine proteasechromosome CDS3913711 990 - 0.339394
NA SF0944 putative fimbrial-like proteinchromosome CDS990458 564 + 0.473404
NA SF3640 hypothetical proteinchromosome CDS3744967 1149 + 0.492602
NA SF3915 sec-independent translocasechromosome CDS4035358 516 + 0.554264
NA SF0316 hypothetical proteinchromosome CDS329654 624 - 0.453526
NA SF3007 hypothetical proteinchromosome CDS3103149 468 - 0.399573
NA SF3641 hypothetical proteinchromosome CDS3746657 2973 + 0.515304
NA SF3008 hypothetical proteinchromosome CDS3103682 240 - 0.429167
NA SF2413 hypothetical proteinchromosome CDS2460544 786 - 0.529262
NA SF3511 hypothetical proteinchromosome CDS3603586 1149 - 0.442994
NA SF0703 head-tail preconnector gp5chromosome CDS729846 1506 + 0.588977
NA SF3803 putative secreted autotransporter toxinchromosome CDS3912667 507 - 0.441815
NA SF0463 hypothetical proteinchromosome CDS478218 501 + 0.431138
NA SF2409 similar to fimbrial proteinchromosome CDS2458261 525 - 0.455238
NA SF3720 similar to serine proteasechromosome CDS3829720 759 + 0.397892
NA SF3992 hypothetical proteinchromosome CDS4120936 369 + 0.479675
NA SF0943 putative fimbrial-like proteinchromosome CDS989956 543 + 0.471455
NA SF1694 possible enzymechromosome CDS1725935 1257 - 0.518695
ccmD SF2282 heme exporter protein Cchromosome CDS2317378 210 - 0.566667
clpP SF0382 ATP-dependent Clp protease proteolytic subunitchromosome CDS391777 624 + 0.509615
exbB SF3051 enterochelin transporter (uptake)chromosome CDS3146691 735 - 0.526531
exbD SF3050 enterochelin transporter (uptake)chromosome CDS3146259 426 - 0.502347
ffh SF2670 GTP-binding export factor binds to signal sequence, GTP and RNAchromosome CDS2744974 1362 - 0.54185
fhiA SF0278 flagellar biosynthetic protein FlhAchromosome CDS295763 1740 - 0.584483
fimA SF4208 major type 1 subunit fimbrin (pilin)chromosome CDS4381556 549 - 0.510018
fimC SF4206 periplasmic chaperonechromosome CDS4380190 726 - 0.442149
fimF SF4202 minor fimbrial subunit, precursor polypeptidechromosome CDS4376171 531 - 0.489642
fimG SF4201 minor fimbrial subunit, precursor polypeptidechromosome CDS4375655 504 - 0.527778
fimI SF4207 fimbrial proteinchromosome CDS4380952 639 - 0.499218
flgM SF1077 flagellar protein FlgMchromosome CDS1117596 294 - 0.530612
flgN SF1076 flagella synthesis protein FlgNchromosome CDS1117175 417 - 0.479616
flhB SF1924 flagellar biosynthesis proteinchromosome CDS1959784 1194 - 0.551089
fliE SF1982 flagellar basal body proteinchromosome CDS2012670 315 - 0.549206
fliH SF1985 flagellar assembly proteinchromosome CDS2015838 687 + 0.572052
fliI SF1986 flagellum-specific ATP synthasechromosome CDS2016524 1374 + 0.580058
fliN SF1991 flagellar motor switch proteinchromosome CDS2020959 414 + 0.557971
fliP SF1993 flagellar biosynthesis proteinchromosome CDS2021863 615 + 0.520325
fliQ SF1994 flagellar biosynthesis proteinchromosome CDS2022487 270 + 0.511111
fliR SF1995 flagellar biosynthesis proteinchromosome CDS2022765 786 + 0.47201
fliS SF1968 flagellar protein FliSchromosome CDS2001449 411 + 0.481752
ftsY SF3482 cell division membrane proteinchromosome CDS3573269 1497 - 0.53173
hofC SF0103 putative integral membrane proteinchromosome CDS113024 1203 - 0.525353
hofQ SF3409 putative transport porteinchromosome CDS3488679 1239 - 0.543987
icsA/virG CP0182 IcsA (VirG), outermembrane protein exposed to the bacterial surface by a C-terminal autotransporter domain and involved in the movement of intracellulpCP301 CDS149644 3309 + 0.409791
lepB SF2630 leader peptidase (signal peptidase I)chromosome CDS2701550 975 - 0.52
lpfA SF3807 putative major fimbrial subunitchromosome CDS3916796 573 - 0.474695
lpfC SF3723 putative long polar fimbriaechromosome CDS3831823 2523 + 0.470075
lspA SF0023 signal peptidase IIchromosome CDS24162 495 + 0.537374
mxiA CP0147 MxiA, innermembrane protein, component of the Mxi-Spa secretion machinerypCP301 CDS126749 2061 + 0.342067
mxiD CP0145 MxiD, outermembrane protein of the secretin family, component of the Mxi-Spa secretion machinerypCP301 CDS123950 1701 + 0.33157
mxiJ CP0139 MxiJ, lipoprotein, component of the Mxi-Spa secretion machinerypCP301 CDS120503 726 + 0.342975
nfrB SF0470 bacteriophage N4 receptor, outer membrane proteinchromosome CDS484845 2238 - 0.521448
pic SF2973 serine protease precurserchromosome CDS3067738 3213 - 0.511983
ppdD SF0105 prelipin peptidase dependent proteinchromosome CDS115373 441 - 0.530612
prlA SF3332 preprotein translocase SecYchromosome CDS3427150 1332 - 0.496997
secA SF0095 translocasechromosome CDS106897 2706 + 0.522542
secB SF3648 export protein SecBchromosome CDS3756257 468 - 0.510684
secD SF0345 protein export protein SecDchromosome CDS357145 1848 + 0.531926
secE SF4054 translocasechromosome CDS4197111 384 + 0.546875
secF SF0346 protein export protein SecFchromosome CDS359003 972 + 0.515432
secG SF3215 protein-export membrane proteinchromosome CDS3314357 333 - 0.501502
sepA CP0070 SepA, extracellular serine protease of the IgA1 protease family, secreted by a C-terminal autotransporter domainpCP301 CDS52745 4095 - 0.487424
sfmA SF0461 putative fimbrial-like proteinchromosome CDS476700 576 + 0.4375
sfmC SF0462 putative chaperonechromosome CDS477495 693 + 0.431457
sigA SF2968 serine proteasechromosome CDS3060438 3858 + 0.417574
smf SF3317 hypothetical proteinchromosome CDS3415226 1125 - 0.510222
sohB SF1274 putative proteasechromosome CDS1323616 1050 + 0.505714
spa24 CP0153 Spa24, component of the Mxi-Spa secretion machinerypCP301 CDS132695 651 + 0.345622
spa29 CP0155 Spa29, component of the Mxi-Spa secretion machinerypCP301 CDS133620 771 + 0.326848
spa33 CP0152 Spa33, component of the Mxi-Spa secretion machinerypCP301 CDS131944 747 + 0.314592
spa40 CP0156 type III secretion proteinpCP301 CDS134397 1029 + 0.317784
spa47 CP0149 type III secretion system ATPasepCP301 CDS129227 1293 + 0.392111
sppA SF1457 protease IV, a signal peptide peptidasechromosome CDS1492060 1857 - 0.519655
spy SF1483 periplasmic proteinchromosome CDS1519826 486 + 0.50823
tatA SF3914 twin argininte translocase protein Achromosome CDS4035043 312 + 0.448718
tatE SF0654 twin argininte translocase protein Achromosome CDS691371 204 - 0.5
tolB SF0557 translocation protein TolB precursorchromosome CDS578224 1293 - 0.531322
tolC SF3075 outer membrane channel precursor proteinchromosome CDS3171251 1482 + 0.513495
tolQ SF0560 inner membrane protein TolQchromosome CDS581387 693 - 0.500722
tolR SF0559 putative inner membrane proteinchromosome CDS580955 429 - 0.517483
yajC SF0344 preprotein translocase subunit YajCchromosome CDS356785 333 + 0.495495
ybbJ SF0433 hypothetical proteinchromosome CDS450721 456 - 0.576754
ybgD SF0578 putative fimbrial-like proteinchromosome CDS604259 567 + 0.47619
ybgP SF0580 putative chaperonechromosome CDS607350 732 + 0.494536
ybgQ SF0579 putative outer membrane proteinchromosome CDS604876 2460 + 0.493902
ycbF SF0945 putative chaperonechromosome CDS990987 738 + 0.509485
ycbS SF0941 putative outer membrane proteinchromosome CDS986284 2601 + 0.478278
ychE SF1241 putative channel proteinchromosome CDS1294075 648 + 0.481481
ydeB SF1565 hypothetical proteinchromosome CDS1596822 666 + 0.510511
yehB SF2171 putative outer membrane proteinchromosome CDS2193959 2481 - 0.455865
yehD SF2175 putative fimbrial-like proteinchromosome CDS2197986 525 - 0.405714
yejO SF2276 putative ATP-binding component of a transport systemchromosome CDS2309590 2511 - 0.486659
yggR SF2942 putative transport proteinchromosome CDS3032395 1026 - 0.540936
yhgN SF3457 hypothetical proteinchromosome CDS3547719 594 + 0.501683
yidC SF3759 inner membrane protein translocase component YidCchromosome CDS3866037 1647 - 0.535519
yigU SF3916 hypothetical proteinchromosome CDS4035876 777 + 0.513514
yjaI SF4074 hypothetical proteinchromosome CDS4220245 567 - 0.516755
yjcP SF4140 putative enzymechromosome CDS4309590 1467 - 0.556919
ylcB SF0473 putative resistance proteinchromosome CDS489504 1383 + 0.517715
yraI SF3181 putative chaperonechromosome CDS3278961 696 + 0.448276
yraK SF3186 putative fimbrial proteinchromosome CDS3283548 1092 + 0.478938
yrfC SF3412 hypothetical proteinchromosome CDS3490649 540 - 0.553704
ytfI SF4271 hypothetical proteinchromosome CDS4449336 939 - 0.356762