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2024-05-18 13:42:00

Gene list

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COG category: Signal transduction mechanisms
Organism: Shigella flexneri 5 str. 8401, 8401

Number of genes found: 133

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Shigella flexneri 5 str. 8401, 8401
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA SFV_3493 hypothetical proteinchromosome CDS3562511 729 + 0.371742
NA SFV_1414 hypothetical proteinchromosome CDS1460807 1599 - 0.500938
NA SFV_1998 hypothetical proteinchromosome CDS2034860 1485 - 0.524579
NA SFV_1517 hypothetical proteinchromosome CDS1557009 714 + 0.42577
NA SFV_3492 hypothetical proteinchromosome CDS3561468 765 - 0.356863
NA SFV_1817 hypothetical proteinchromosome CDS1865401 1233 + 0.481752
NA SFV_1581 hypothetical proteinchromosome CDS1616941 1419 - 0.487667
NA SFV_2438 putative sensor proteinchromosome CDS2495828 1122 + 0.49287
NA SFV_0270 putative prophage repressor CIchromosome CDS287337 633 - 0.461295
NA SFV_0817 hypothetical proteinchromosome CDS855487 1329 + 0.433409
NA SFV_3419 probable growth inhibitor, PemK-like, autoregulatedchromosome CDS3476899 366 + 0.469945
NA SFV_1734 putative enzymechromosome CDS1775675 501 + 0.493014
NA SFV_1037 hypothetical proteinchromosome CDS1086594 339 + 0.471976
NA SFV_2439 putative 2-component transcriptional regulatorchromosome CDS2496964 735 + 0.47483
NA SFV_2408 hypothetical proteinchromosome CDS2458411 486 - 0.528807
NA SFV_1733 hypothetical proteinchromosome CDS1774488 1146 + 0.445899
NA SFV_1397 hypothetical proteinchromosome CDS1443933 498 + 0.5
NA SFV_0816 hypothetical proteinchromosome CDS853053 2427 + 0.41574
apaH SFV_0043 diadenosine tetraphosphatasechromosome CDS49366 843 - 0.559905
arcA SFV_4435 Aerobic respiration control protein arcAchromosome CDS4572222 717 - 0.51046
arcB SFV_3240 aerobic respiration sensor-response proteinchromosome CDS3306513 2337 - 0.506632
artI SFV_0848 arginine 3rd transport system periplasmic binding proteinchromosome CDS883645 732 - 0.486339
baeR SFV_2140 transcriptional response regulatory proteinchromosome CDS2173962 723 + 0.538036
baeS SFV_2139 sensor protein (for BaeR)chromosome CDS2172562 1404 + 0.547009
barA SFV_2671 sensor-regulatorchromosome CDS2743107 2757 - 0.498005
basR SFV_4117 Transcriptional Regulatory protein basR/pmrAchromosome CDS4246840 669 + 0.532138
basS SFV_4118 sensor protein for basRchromosome CDS4247518 1092 + 0.544872
bglJ SFV_4399 2-component transcriptional regulatorchromosome CDS4538094 678 + 0.454277
cheA SFV_1934 Chemotaxis protein cheAchromosome CDS1979104 1965 - 0.531807
cheB SFV_1929 chemotaxis-specific methylesterasechromosome CDS1973196 1050 - 0.537143
cheR SFV_1930 Chemotaxis protein methyltransferasechromosome CDS1974248 861 - 0.538908
cheW SFV_1933 positive regulator of CheA protein activitychromosome CDS1978580 504 - 0.515873
cheY SFV_1928 Chemotaxis protein cheYchromosome CDS1972792 390 - 0.489744
cheZ SFV_1927 Chemotaxis protein cheZchromosome CDS1972137 645 - 0.534884
cpxA SFV_3582 two-component sensor proteinchromosome CDS3661416 1374 + 0.546579
cpxR SFV_3581 transcriptional regulator in 2-component systemchromosome CDS3660787 633 + 0.522907
creB SFV_4432 catabolic regulation response regulatorchromosome CDS4568640 690 + 0.549275
crp SFV_3363 cyclic AMP receptor proteinchromosome CDS3417252 633 + 0.49921
csrA SFV_2809 carbon storage regulatorchromosome CDS2878052 186 + 0.494624
cstA SFV_0546 carbon starvation proteinchromosome CDS576621 2106 + 0.5717
dksA SFV_0130 dnaK suppressor proteinchromosome CDS151602 456 - 0.526316
envZ SFV_3409 osmolarity sensor proteinchromosome CDS3465717 1353 - 0.569845
evgA SFV_2428 putative positive transcription regulatorchromosome CDS2480558 615 + 0.403252
evgS SFV_2429 putative sensor for regulator EvgAchromosome CDS2481177 3594 + 0.407902
fhlA SFV_2772 Formate hydrogenlyase transcriptional activatorchromosome CDS2839084 2079 - 0.525734
fimZ SFV_0497 fimbrial Z proteinchromosome CDS520945 681 - 0.381791
fliY SFV_1964 putative periplasmic binding transport proteinchromosome CDS2004403 801 - 0.503121
fnr SFV_1825 Fumarate and nitrate reduction Regulatory proteinchromosome CDS1873805 753 + 0.508632
frvA SFV_3595 PTS system, fructose-specific IIA componentchromosome CDS3674694 447 + 0.503356
glnE SFV_3093 adenylylating enzyme for glutamine synthetasechromosome CDS3157777 2928 - 0.549522
glnG SFV_3633 Nitrogen regulation protein NR(I)chromosome CDS3714926 1410 + 0.565248
glnH SFV_0795 periplasmic glutamine-binding proteinchromosome CDS827300 747 - 0.485944
glnL SFV_3632 Nitrogen regulation protein NR(II)chromosome CDS3713865 1050 + 0.544762
hisJ SFV_2376 histidine-binding periplasmic protein of high-affinity histidine transport systemchromosome CDS2426678 783 - 0.49553
hnr SFV_1248 Hnr proteinchromosome CDS1299975 1014 + 0.487179
hydH SFV_4075 sensor kinase for HydGchromosome CDS4192100 1368 + 0.544591
hyfR SFV_2536 putative 2-component regulator, interaction with sigma 54chromosome CDS2595896 1947 + 0.528505
lexA SFV_4170 regulator for SOS(lexA) regulonchromosome CDS4304544 609 - 0.52381
narL SFV_1237 Nitrate/nitrite response regulator protein narLchromosome CDS1285685 651 - 0.516129
narP SFV_2269 nitrate/nitrite response regulatorchromosome CDS2306198 648 + 0.523148
narX SFV_1238 nitrate/nitrate sensor, histidine protein kinasechromosome CDS1286328 1797 - 0.534224
nrfB SFV_4140 Cytochrome c-type protein nrfB precursorchromosome CDS4271817 567 - 0.536155
ompR SFV_3410 osmolarity response regulatorchromosome CDS3467066 720 - 0.547222
phoB SFV_0364 positive response regulator for pho regulonchromosome CDS380748 690 + 0.53913
phoP SFV_1165 transcriptional regulatory proteinchromosome CDS1209817 672 - 0.480655
phoQ SFV_1164 sensor protein PhoQchromosome CDS1208357 1461 - 0.513347
phoR SFV_0365 positive and negative sensor protein for pho regulonchromosome CDS381495 1296 + 0.533179
proQ SFV_1398 Activator of ProP osmoprotectant transporterchromosome CDS1444527 699 + 0.532189
pspA SFV_1318 phage shock protein, inner membrane proteinchromosome CDS1376156 669 + 0.490284
pspC SFV_1320 phage shock proteinchromosome CDS1377102 360 + 0.502778
pspF SFV_1317 psp operon transcriptional activatorchromosome CDS1375012 978 - 0.521472
ptsN SFV_3234 Nitrogen regulatory IIA proteinchromosome CDS3302404 492 + 0.518293
ptsP SFV_2907 Phosphoenolpyruvate-protein phosphotransferase ptsPchromosome CDS2973515 2247 - 0.538941
ptxA SFV_4351 putative PTS system enzyme II A componentchromosome CDS4493063 465 + 0.550538
qseB SFV_3071 QseBchromosome CDS3136733 633 + 0.521327
rcsA SFV_1994 Colanic acid capsular biosynthesis activation protein Achromosome CDS2032505 624 + 0.383013
rcsB SFV_2292 positive response regulator for colanic capsule biosynthesischromosome CDS2331305 651 + 0.479263
rcsC SFV_2293 Sensor protein rcsCchromosome CDS2332155 2850 - 0.50807
relA SFV_2673 GTP pyrophosphokinasechromosome CDS2747269 2235 + 0.536913
rseA SFV_2635 sigma-E factor, negative regulatory proteinchromosome CDS2702449 651 - 0.519201
rseB SFV_2634 regulates activity of sigma-E factorchromosome CDS2701493 957 - 0.505747
rseC SFV_2633 Sigma-E factor Regulatory protein rseCchromosome CDS2701017 480 - 0.55625
rstA SFV_1623 response transcriptional regulatory proteinchromosome CDS1655844 804 + 0.475124
rtcR SFV_3429 putative 2-component regulatorchromosome CDS3491298 1599 + 0.553471
rtn SFV_2254 hypothetical proteinchromosome CDS2287685 1494 + 0.500669
spoT SFV_3879 guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolasechromosome CDS3983562 2109 - 0.53817
spy SFV_1477 periplasmic proteinchromosome CDS1522283 486 + 0.50823
torR SFV_1005 response transcriptional regulator for torAchromosome CDS1053472 693 - 0.528139
torS SFV_1004 sensor protein torSchromosome CDS1050022 2451 - 0.532844
uhpA SFV_3840 Transcriptional Regulatory protein uhpAchromosome CDS3936107 591 + 0.590525
uhpB SFV_3841 Sensor protein uhpBchromosome CDS3936694 1506 + 0.569057
umuD SFV_1190 SOS mutagenesischromosome CDS1231140 420 + 0.480952
uspA SFV_3507 universal stress proteinchromosome CDS3576359 435 + 0.485057
uvrY SFV_1958 putative 2-component transcriptional regulatorchromosome CDS1999658 621 - 0.494364
waaY SFV_3903 putative LPS biosynthesis proteinchromosome CDS4004767 708 + 0.305085
wzb SFV_2120 probable protein-tyrosine-phosphatasechromosome CDS2143918 444 - 0.540541
yaiC SFV_0350 hypothetical proteinchromosome CDS367044 1116 + 0.534946
ybcZ SFV_0503 putative 2-component sensor proteinchromosome CDS528781 1443 - 0.519058
ybdQ SFV_0561 hypothetical proteinchromosome CDS590650 429 - 0.501166
ybeJ SFV_0671 putative periplasmic binding transport proteinchromosome CDS707259 909 + 0.488449
ybiI SFV_0786 hypothetical proteinchromosome CDS816795 267 - 0.513109
yccY SFV_0991 putative phosphatasechromosome CDS1040789 459 - 0.51634
ydaA SFV_1826 hypothetical proteinchromosome CDS1874709 951 + 0.505783
yecG SFV_1939 putative regulatorchromosome CDS1984724 429 + 0.449883
yedV SFV_2013 putative 2-component sensor proteinchromosome CDS2047576 1359 - 0.392936
yedW SFV_2014 putative 2-component transcriptional regulatorchromosome CDS2048934 783 - 0.430396
yehT SFV_2181 hypothetical proteinchromosome CDS2213582 720 - 0.491667
yehU SFV_2182 putative 2-component sensor proteinchromosome CDS2214298 1647 - 0.510625
yeiL SFV_2238 putative transcriptional regulatorchromosome CDS2271474 660 + 0.439394
yfeA SFV_2451 hypothetical proteinchromosome CDS2510873 2190 - 0.488584
yfhA SFV_2602 putative 2-component transcriptional regulatorchromosome CDS2668027 1335 - 0.543071
yfhK SFV_2604 putative 2-component sensor proteinchromosome CDS2670229 1428 - 0.52521
yfiN SFV_2866 hypothetical proteinchromosome CDS2926989 687 - 0.483261
ygaA SFV_2796 putative 2-component transcriptional regulatorchromosome CDS2864736 1515 + 0.567657
ygaG SFV_2817 hypothetical proteinchromosome CDS2881925 516 + 0.517442
ygiM SFV_3095 hypothetical proteinchromosome CDS3162183 621 + 0.523349
yhdA SFV_3278 hypothetical proteinchromosome CDS3351623 1941 - 0.50541
yhiE SFV_3526 hypothetical proteinchromosome CDS3595684 528 + 0.329545
yhjB SFV_3568 putative regulatorchromosome CDS3648946 603 + 0.47927
yhjH SFV_3563 hypothetical proteinchromosome CDS3641653 768 + 0.528646
yhjK SFV_3559 hypothetical proteinchromosome CDS3635259 1950 + 0.52359
yiiO SFV_3580 Uncharacterized periplasmic proteinchromosome CDS3660071 501 - 0.500998
yiiT SFV_3994 putative regulatorchromosome CDS4099553 429 + 0.431235
yjaI SFV_4074 hypothetical proteinchromosome CDS4191428 567 - 0.516755
yjcC SFV_4151 hypothetical proteinchromosome CDS4284433 1587 - 0.446755
yjdG SFV_4106 putative 2-component transcriptional regulatorchromosome CDS4230754 720 + 0.501389
yjdH SFV_4105 putative 2-component sensor proteinchromosome CDS4229126 1632 + 0.501838
yjiY SFV_4373 putative carbon starvation proteinchromosome CDS4510405 2166 - 0.562789
yjjQ SFV_4398 putative regulatorchromosome CDS4537552 585 + 0.45812
ylaB SFV_0431 hypothetical proteinchromosome CDS451249 1557 - 0.479127
ylcA SFV_0504 putative 2-component transcriptional regulatorchromosome CDS530213 684 - 0.54386
ynaF SFV_1813 putative filament proteinchromosome CDS1860572 507 + 0.473373
yojN SFV_2291 putative 2-component sensor proteinchromosome CDS2328709 2580 + 0.492248