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2024-05-18 11:45:32

Gene list

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COG category: Signal transduction mechanisms
Organism: Shigella flexneri 2a str. 301, 301

Number of genes found: 143

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Shigella flexneri 2a str. 301, 301
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA SF1524 hypothetical proteinchromosome CDS1554987 714 + 0.42577
NA SF1393 hypothetical proteinchromosome CDS1433393 498 + 0.497992
NA SF3992 hypothetical proteinchromosome CDS4120936 369 + 0.479675
NA SF3509 hypothetical proteinchromosome CDS3602067 762 + 0.372703
NA SF2535 similar to formate hydrogen-lyase transcriptional activator for fdhF, hyc and hyp operonschromosome CDS2600007 1833 + 0.521549
NA SF0784 hypothetical proteinchromosome CDS819492 1329 + 0.433409
NA SF3433 hypothetical proteinchromosome CDS3514722 270 + 0.5
NA SF1571 hypothetical proteinchromosome CDS1602941 948 + 0.504219
NA SF0995 similar to histidine protein kinase/phosphatase, aerobic respiration sensor-response protein, sensor for arcAchromosome CDS1041099 2430 - 0.541564
NA SF3434 PemK proteinchromosome CDS3514985 366 + 0.469945
NA SF1413 hypothetical proteinchromosome CDS1450268 1599 - 0.500938
NA SF1963 similar to periplasmic glutamine-binding protein; permeasechromosome CDS1995731 858 - 0.495338
NA SF0466 hypothetical proteinchromosome CDS479460 294 - 0.404762
NA SF2418 hypothetical proteinchromosome CDS2465290 486 - 0.528807
NA SF1156 hypothetical proteinchromosome CDS1198442 1524 + 0.450787
NA SF2447 putative 2-component transcriptional regulatorchromosome CDS2503224 735 + 0.47483
NA SF1022 putative ATP-binding proteinchromosome CDS1068479 924 + 0.527056
apaH SF0046 diadenosinetetraphosphatasechromosome CDS49698 843 - 0.559905
arcA SF4433 negative response regulator of genes in aerobic pathways (sensors, ArcB and CpxA)chromosome CDS4605141 717 - 0.51046
arcB SF3250 histidine protein kinase/phosphatase, aerobic respiration sensor-response protein, sensor for arcAchromosome CDS3342856 2337 - 0.506205
argT SF2386 lysine-, arginine-, ornithine-binding periplasmic proteinchromosome CDS2435121 783 - 0.498084
artI SF0817 arginine 3rd transport system periplasmic binding proteinchromosome CDS848990 732 - 0.489071
artJ SF0814 arginine 3rd transport system periplasmic binding proteinchromosome CDS846576 732 - 0.456284
baeR SF2144 transcriptional response regulatory protein (sensor BaeS)chromosome CDS2171058 723 + 0.538036
baeS SF2143 sensor protein for BaeRchromosome CDS2169658 1404 + 0.547721
barA SF2799 sensor-regulatorchromosome CDS2874043 2757 + 0.498731
basR SF4110 transcriptional regulatory protein,chromosome CDS4274607 669 + 0.532138
basS SF4111 sensor protein for BasRchromosome CDS4275276 1101 + 0.543143
bglJ SF4399 2-component transcriptional regulatorchromosome CDS4571170 528 + 0.464015
bolA SF0379 possible regulator of murein geneschromosome CDS389538 351 + 0.48433
cheA SF1937 chemotaxis protein CheAchromosome CDS1971989 1965 - 0.531807
cheB SF1932 chemotaxis-specific methylesterasechromosome CDS1966081 1050 - 0.537143
cheR SF1933 response regulator for chemotaxis; protein glutamate methyltransferasechromosome CDS1967133 861 - 0.538908
cheW SF1936 positive regulator of CheA protein activitychromosome CDS1971465 504 - 0.515873
cheY SF1931 chemotaxis protein CheYchromosome CDS1965677 390 - 0.489744
cheZ SF1930 chemotaxis protein CheZchromosome CDS1965022 645 - 0.533333
cpxA SF3990 two-component sensor proteinchromosome CDS4118586 1374 - 0.545124
cpxR SF3991 transcriptional regulator in 2-component systemchromosome CDS4119956 699 - 0.51216
creB SF4430 catabolic regulation response regulatorchromosome CDS4601559 690 + 0.549275
creC SF4431 catabolite repression sensor kinase for PhoB, alternative sensor for pho regulonchromosome CDS4602248 1425 + 0.538947
crp SF3376 cyclic AMP receptor proteinchromosome CDS3455330 633 + 0.49763
csrA SF2719 carbon storage regulatorchromosome CDS2792461 186 - 0.494624
cstA SF0512 carbon starvation proteinchromosome CDS533257 2106 + 0.57075
dksA SF0137 dnaK suppressor proteinchromosome CDS151927 456 - 0.526316
envZ SF3423 osmolarity sensor proteinchromosome CDS3503803 1353 - 0.569845
evgA SF2436 putative positive transcription regulator (sensor EvgS)chromosome CDS2486818 615 + 0.406504
evgS SF2437 putative sensor for regulator EvgAchromosome CDS2487437 3594 + 0.407624
fhlA SF2748 formate hydrogen-lyase transcriptional activator for fdhF, hyc and hyp operonschromosome CDS2822687 2079 + 0.525253
fnr SF1836 global transcription regulator Fnrchromosome CDS1875732 753 + 0.508632
frvA SF3977 PTS system, fructose-specific IIA componentchromosome CDS4106234 447 - 0.503356
gatA SF2156 galactitol-specific enzyme IIA of phosphotransferase systemchromosome CDS2180275 453 - 0.421634
glnE SF3094 adenylylating enzyme for glutamine synthetasechromosome CDS3185926 2841 - 0.552974
glnG SF3938 sensor glnL response regulator (nitrogen regulator I, NRI)chromosome CDS4066558 1410 - 0.564539
glnH SF0762 glutamine ABC transporter periplasmic-binding proteinchromosome CDS791320 747 - 0.485944
glnL SF3939 histidine protein kinase sensor for GlnG regulator (nitrogen regulator II, NRII)chromosome CDS4067979 1050 - 0.544762
hisJ SF2385 histidine-binding periplasmic protein of high-affinity histidine transport systemchromosome CDS2434106 795 - 0.496855
hnr SF1235 Hnr proteinchromosome CDS1285281 1014 + 0.487179
hydG SF4076 response regulator of hydrogenase 3 activity (sensor HydH)chromosome CDS4222281 1326 + 0.567873
hydH SF4075 sensor kinase for HydG, hydrogenase 3 activitychromosome CDS4220908 1377 + 0.542484
lexA SF4162 LexA repressorchromosome CDS4332059 609 - 0.52381
narL SF1224 nitrate/nitrite response regulator protein NarLchromosome CDS1270991 651 - 0.516129
narP SF2277 nitrate/nitrite response regulator (sensor NarQ)chromosome CDS2312501 648 + 0.523148
narX SF1225 nitrate/nitrite sensor protein NarXchromosome CDS1271634 1797 - 0.534224
nrfB SF4131 formate-dependent nitrite reductasechromosome CDS4299835 567 + 0.536155
ompR SF3424 osmolarity response regulatorchromosome CDS3505152 720 - 0.547222
phoB SF0336 positive response regulator for pho regulonchromosome CDS346650 690 + 0.53913
phoP SF1149 transcriptional regulatory proteinchromosome CDS1190960 672 - 0.480655
phoQ SF1148 sensor protein PhoQchromosome CDS1189500 1461 - 0.514031
phoR SF0337 positive and negative sensor protein for pho regulonchromosome CDS347397 1296 + 0.533179
pspA SF1309 phage shock protein, inner membrane proteinchromosome CDS1362226 669 + 0.491779
pspC SF1311 putative regulator of phage shock responsechromosome CDS1363172 360 + 0.502778
pspF SF1308 psp operon transcriptional activatorchromosome CDS1361082 993 - 0.520644
ptsN SF3244 phosphotransferase system enzyme IIAchromosome CDS3338747 492 + 0.518293
ptsP SF2839 PTS system, enzyme I, transcriptional regulator (with NPR and NTR proteins)chromosome CDS2926550 2247 - 0.538051
ptxA SF4350 putative PTS system enzyme II A componentchromosome CDS4525987 465 + 0.552688
rcsA SF1996 positive regulator for ctr capsule biosynthesis, positive transcription factorchromosome CDS2023835 624 + 0.383013
rcsB SF2301 positive response regulator for colanic capsule biosynthesis, (sensor, RcsC)chromosome CDS2337580 651 + 0.477727
rcsC SF2302 sensor for ctr capsule biosynthesis, probable histidine kinase acting on RcsBchromosome CDS2338430 2850 - 0.507719
relA SF2797 (p)ppGpp synthetase I (GTP pyrophosphokinase)chromosome CDS2870403 2235 - 0.53736
rseA SF2634 sigma-E factor regulatory protein RseAchromosome CDS2705969 651 - 0.519201
rseB SF2633 periplasmic negative regulator of sigmaEchromosome CDS2705013 957 - 0.507837
rseC SF2632 sigma-E factorchromosome CDS2704537 480 - 0.558333
rstA SF1629 response transcriptional regulatory protein (RstB sensor)chromosome CDS1656796 744 + 0.485215
rstB SF1632 sensor histidine protein kinase, RstA regulatorchromosome CDS1659262 1302 + 0.503072
rtcR SF3444 putative 2-component regulatorchromosome CDS3529479 1599 + 0.553471
rtn SF2263 hypothetical proteinchromosome CDS2293929 1557 + 0.500963
spoT SF3690 (p)ppGpp synthetase II and guanosine-3,5-bis pyrophosphate 3-pyrophosphohydrolasechromosome CDS3792716 2109 + 0.537696
spy SF1483 periplasmic proteinchromosome CDS1519826 486 + 0.50823
tap SF1934 methyl-accepting chemotaxis protein IV, peptide sensor receptorchromosome CDS1968012 1602 - 0.538702
tar SF1935 methyl-accepting chemotaxis protein II, aspartate sensor receptorchromosome CDS1969659 1662 - 0.527076
torR SF0998 TorCAD response regulatorchromosome CDS1044894 693 - 0.526696
trg SF1789 methyl-accepting chemotaxis protein III, ribose sensor receptorchromosome CDS1825835 1641 - 0.508836
tsr SF4386 methyl-accepting chemotaxis protein I, serine sensor receptorchromosome CDS4557945 1665 + 0.53994
uhpA SF3792 response regulatorchromosome CDS3900704 591 + 0.590525
uhpB SF3793 sensor histidine protein kinase, phosphorylates UhpAchromosome CDS3901294 1503 + 0.568862
umuD SF1172 mutagenesis and repair proteinchromosome CDS1214458 420 + 0.478571
uspA SF3526 universal stress proteinchromosome CDS3615796 435 + 0.485057
uvrY SF1957 response regulatorchromosome CDS1990986 657 - 0.490107
waaP SF3667 lipopolysaccharide core biosynthesis proteinchromosome CDS3774656 807 - 0.478315
waaY SF3665 putative LPS biosynthesis proteinchromosome CDS3772873 708 - 0.305085
wzb SF2125 probable protein-tyrosine-phosphatasechromosome CDS2141015 444 - 0.538288
yaiC SF0321 hypothetical proteinchromosome CDS332946 1116 + 0.536738
ybcZ SF0471 putative 2-component sensor proteinchromosome CDS487232 1443 - 0.519058
ybdQ SF0526 hypothetical proteinchromosome CDS547286 429 - 0.501166
ybeJ SF0626 putative periplasmic binding transport proteinchromosome CDS662773 909 + 0.487349
ybeZ SF0622 putative ATP-binding protein in pho regulonchromosome CDS658302 1080 + 0.539815
ybiI SF0753 hypothetical proteinchromosome CDS780815 267 - 0.509363
yccY SF0984 putative phosphatasechromosome CDS1032642 459 - 0.51634
ydaA SF1837 hypothetical proteinchromosome CDS1876636 951 + 0.505783
yddV SF1737 hypothetical proteinchromosome CDS1775180 1146 + 0.445899
yeaP SF1430 hypothetical proteinchromosome CDS1468458 1026 - 0.478557
yebJ SF1394 hypothetical proteinchromosome CDS1434566 120 + 0.525
yedQ SF2000 hypothetical proteinchromosome CDS2026190 1485 - 0.524579
yedV SF2015 putative 2-component sensor proteinchromosome CDS2038913 1359 - 0.393672
yedW SF2016 putative 2-component transcriptional regulatorchromosome CDS2040271 672 - 0.446429
yehT SF2197 hypothetical proteinchromosome CDS2223233 720 - 0.490278
yehU SF2198 putative 2-component sensor proteinchromosome CDS2223949 1686 - 0.507711
yeiL SF2248 putative transcriptional regulatorchromosome CDS2277785 579 + 0.435233
yfhA SF2601 putative 2-component transcriptional regulatorchromosome CDS2672340 1335 - 0.543071
yfhK SF2603 putative 2-component sensor proteinchromosome CDS2674542 1491 - 0.52381
ygaA SF2732 anaerobic nitric oxide reductase transcription regulatorchromosome CDS2804448 1590 - 0.556604
ygaG SF2714 S-ribosylhomocysteinasechromosome CDS2788116 516 - 0.515504
ygiM SF3096 hypothetical proteinchromosome CDS3190332 621 + 0.523349
ygiX SF3066 putative 2-component transcriptional regulatorchromosome CDS3163039 660 + 0.513636
ygiY SF3067 putative 2-component sensor proteinchromosome CDS3163695 1275 + 0.52549
yhdA SF3290 hypothetical proteinchromosome CDS3388964 1941 - 0.504894
yhdW SF3304 putative periplasmic binding transport proteinchromosome CDS3401320 1026 + 0.493177
yhdW SF3520 putative periplasmic binding transport proteinchromosome CDS3609890 918 - 0.489107
yhiE SF3546 hypothetical proteinchromosome CDS3635423 528 + 0.329545
yhjB SF3552 putative regulatorchromosome CDS3641452 603 - 0.47927
yhjH SF3558 hypothetical proteinchromosome CDS3648580 768 - 0.528646
yhjK SF3561 hypothetical proteinchromosome CDS3653793 1950 - 0.52359
yihK SF3941 putative GTP-binding factorchromosome CDS4070983 1824 + 0.531798
yiiT SF4001 putative regulatorchromosome CDS4128276 429 + 0.431235
yjaI SF4074 hypothetical proteinchromosome CDS4220245 567 - 0.516755
yjdG SF4099 putative 2-component transcriptional regulatorchromosome CDS4258522 720 + 0.501389
yjdH SF4098 putative 2-component sensor proteinchromosome CDS4256894 1632 + 0.501838
yjiY SF4372 putative carbon starvation proteinchromosome CDS4543329 2166 - 0.562789
yjjQ SF4398 putative regulatorchromosome CDS4570478 585 + 0.45812
ylaB SF0402 hypothetical proteinchromosome CDS413598 1551 - 0.477112
ylcA SF0472 putative 2-component transcriptional regulatorchromosome CDS488664 684 - 0.54386
ynaF SF1824 putative filament proteinchromosome CDS1862500 507 + 0.473373
yojN SF2300 putative 2-component sensor proteinchromosome CDS2334891 2673 + 0.492705