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2024-05-18 12:58:44

Gene list

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COG category: Posttranslational modification, protein turnover, chaperones
Organism: Shigella flexneri 5 str. 8401, 8401

Number of genes found: 126

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Shigella flexneri 5 str. 8401, 8401
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA SFV_3494 hypothetical proteinchromosome CDS3563346 513 - 0.465887
NA SFV_2986 putative serine proteasechromosome CDS3054313 909 + 0.488449
NA SFV_0963 putative ATP-dependent proteasechromosome CDS1011760 1761 - 0.516752
NA SFV_0277 putative antitermination proteinchromosome CDS295367 624 + 0.504808
NA SFV_2719 head-tail preconnector gp5chromosome CDS2785586 1506 + 0.589641
NA SFV_3042 hypothetical proteinchromosome CDS3107752 867 + 0.537486
aat SFV_0876 leucyl, phenylalanyl-tRNA-protein transferasechromosome CDS912193 705 - 0.539007
ahpC SFV_0559 alkyl hydroperoxide reductase, C22 subunit, thioredoxin-likechromosome CDS588156 564 + 0.498227
ahpF SFV_0560 Alkyl hydroperoxide reductase subunit Fchromosome CDS588964 1566 + 0.527458
bcp SFV_2525 bacterioferritin comigratory proteinchromosome CDS2584350 471 + 0.492569
btuE SFV_1513 vitamin B12 transportchromosome CDS1553482 552 + 0.494565
cbpA SFV_1012 curved DNA-binding proteinchromosome CDS1059740 921 - 0.527687
ccmA SFV_2277 ATP binding protein of heme exporter Achromosome CDS2312719 624 - 0.55609
ccmB SFV_2276 heme exporter protein B, cytochrome c-type biogenesis proteinchromosome CDS2312060 663 - 0.556561
ccmC SFV_2275 heme exporter protein Cchromosome CDS2311281 762 - 0.551181
ccmE SFV_2273 Cytochrome c-type biogenesis protein ccmEchromosome CDS2310599 480 - 0.54375
ccmF SFV_2272 cytochrome c-type biogenesis proteinchromosome CDS2308659 1944 - 0.571502
ccmH SFV_2270 possible subunit of heme lyasechromosome CDS2307056 1053 - 0.545109
clpA SFV_0873 ATP-binding component of serine proteasechromosome CDS908670 2277 + 0.527009
clpB SFV_2660 heat shock proteinchromosome CDS2729209 2574 + 0.513209
clpP SFV_0411 ATP-dependent proteolytic subunit of clpA-clpP serine proteasechromosome CDS429428 624 + 0.509615
clpX SFV_0412 ATP-dependent protease ATP-binding subunit proteasechromosome CDS430177 1275 + 0.517647
cydC SFV_0877 ATP-binding component of cytochrome-related transportchromosome CDS912939 1722 - 0.535424
cydD SFV_0878 ATP-binding component of cytochrome-related transportchromosome CDS914661 1767 - 0.531975
cysU SFV_2477 sulfate, thiosulfate transport system permease T proteinchromosome CDS2532685 834 - 0.547962
degS SFV_3262 proteasechromosome CDS3332730 1068 + 0.525281
dnaJ SFV_0013 chaperone with DnaKchromosome CDS14233 1131 + 0.551724
dnaK SFV_0012 chaperone Hsp70chromosome CDS12228 1917 + 0.511737
dsbA SFV_3641 Thiol:disulfide interchange protein dsbA precursorchromosome CDS3726936 627 - 0.478469
dsbB SFV_1192 disulfide bond formation protein Bchromosome CDS1232873 531 - 0.52354
dsbC SFV_2941 protein disulfide isomerase IIchromosome CDS3010631 711 - 0.483826
dsbD SFV_4292 thiol:disulfide interchange proteinchromosome CDS4435550 1698 - 0.540636
dsbE SFV_2271 Thiol:disulfide interchange protein dsbEchromosome CDS2308105 558 - 0.543011
dsbG SFV_0558 thiol:disulfide interchange proteinchromosome CDS587038 807 - 0.459727
fdhE SFV_3604 affects formate dehydrogenase-Nchromosome CDS3684736 930 + 0.553763
fklB SFV_4280 FKBP-type 22KD peptidyl-prolyl cis-trans isomerase (rotamase)chromosome CDS4427008 621 - 0.557166
fkpA SFV_3352 FKBP-type peptidyl-prolyl cis-trans isomerasechromosome CDS3407768 813 - 0.477245
flgN SFV_1092 flagellar biosynthetic proteinchromosome CDS1135244 417 - 0.479616
fliS SFV_1969 flagellar protein FliSchromosome CDS2010121 411 + 0.484185
glnD SFV_0150 protein PIIchromosome CDS176581 2673 - 0.534231
glnE SFV_3093 adenylylating enzyme for glutamine synthetasechromosome CDS3157777 2928 - 0.549522
grpE SFV_2857 GrpE proteinchromosome CDS2920001 594 + 0.50505
grxA SFV_0834 glutaredoxin1 redox coenzyme for glutathione-dependent ribonucleotide reductasechromosome CDS871906 258 - 0.449612
grxB SFV_1086 glutaredoxin 2chromosome CDS1129237 648 - 0.487654
grxC SFV_3921 glutaredoxin 3chromosome CDS4022986 252 + 0.515873
gst SFV_1652 glutathionine S-transferasechromosome CDS1690583 606 + 0.504951
hflB SFV_3208 ATP-dependent zinc-metallo proteasechromosome CDS3280841 1935 - 0.534367
hflC SFV_4333 protease specific for phage lambda cII repressorchromosome CDS4475972 1005 + 0.526368
hflK SFV_4332 protease specific for phage lambda cII repressorchromosome CDS4474710 1260 + 0.561905
hscA SFV_2574 chaperone protein HscAchromosome CDS2637797 1851 - 0.575905
hslJ SFV_1804 heat shock protein hslJchromosome CDS1848866 345 - 0.472464
hslU SFV_4002 ATP-dependent protease ATP-binding subunitchromosome CDS4106771 1332 - 0.523273
hslV SFV_4003 ATP-dependent protease peptidase subunitchromosome CDS4108112 531 - 0.52354
htpX SFV_1400 heat shock protein, integral membrane proteinchromosome CDS1447485 882 + 0.531746
htrA SFV_0146 periplasmic serine protease Dochromosome CDS172214 1425 + 0.538947
hyaE SFV_0985 processing of HyaA and HyaB proteinschromosome CDS1032914 399 + 0.568922
hybG SFV_3043 Hydrogenase-2 operon protein hybGchromosome CDS3108741 249 - 0.534137
hypB SFV_2776 Hydrogenase isoenzyme nickel incorporation protein hypBchromosome CDS2843627 873 - 0.553265
hypC SFV_2775 HypCchromosome CDS2843364 273 - 0.553114
hypD SFV_2774 HypDchromosome CDS2842243 1122 - 0.554367
hypE SFV_2773 HypEchromosome CDS2841236 969 - 0.575851
hypF SFV_2793 transcriptional regulatory proteinchromosome CDS2859600 2253 + 0.575677
ibpA SFV_3824 heat shock proteinchromosome CDS3919464 414 + 0.47343
ibpB SFV_3825 heat shock proteinchromosome CDS3919989 429 + 0.487179
lon SFV_0413 DNA-binding, ATP-dependent protease Lachromosome CDS431639 2355 + 0.523567
mopA SFV_4299 GroELchromosome CDS4443230 1647 + 0.530662
mopB SFV_4298 co-chaperonin GroESchromosome CDS4442893 294 + 0.493197
msrA SFV_4269 peptide methionine sulfoxide reductasechromosome CDS4414406 639 + 0.543036
nrdG SFV_4254 anaerobic ribonucleotide reductase activating proteinchromosome CDS4395336 465 + 0.505376
nrfE SFV_4137 Cytochrome c-type biogenesis protein nrfEchromosome CDS4268458 1605 - 0.568224
nrfF SFV_4136 part of formate-dependent nitrite reductase complexchromosome CDS4268082 384 - 0.515625
nrfG SFV_4135 part of formate-dependent nitrite reductase complexchromosome CDS4267489 597 - 0.522613
osmC SFV_1739 osmotically inducible proteinchromosome CDS1779633 432 - 0.502315
pcm SFV_2755 L-isoaspartate protein carboxylmethyltransferase type IIchromosome CDS2822362 627 + 0.53429
pflA SFV_0902 pyruvate formate lyase activating enzyme 1chromosome CDS939695 741 - 0.495277
pflC SFV_4021 probable pyruvate formate lyase activating enzyme 2chromosome CDS4132509 879 + 0.54835
ppiA SFV_3369 peptidyl-prolyl cis-trans isomerase Achromosome CDS3422857 582 - 0.510309
ppiB SFV_0483 peptidyl-prolyl cis-trans isomerase B (rotamase B)chromosome CDS510022 495 - 0.476768
ppiC SFV_3727 peptidyl-prolyl cis-trans isomerase Cchromosome CDS3813726 282 + 0.510638
ptr SFV_2899 protease IIIchromosome CDS2963323 2889 - 0.511596
slpA SFV_0022 probable FKBX-type 16KD peptidyl-prolyl cis-trans isomerasechromosome CDS24809 450 + 0.548889
slyD SFV_3354 FKBP-type peptidyl-prolyl cis-trans isomerasechromosome CDS3409068 591 - 0.549915
smpB SFV_2852 small protein Bchromosome CDS2915331 483 - 0.515528
sms SFV_4423 probable ATP-dependent proteasechromosome CDS4558599 1383 + 0.576283
sppA SFV_1451 protease IV, a signal peptide peptidasechromosome CDS1495126 1857 - 0.519655
sspA SFV_3256 stringent starvation protein Achromosome CDS3327312 639 - 0.536776
surA SFV_0047 survival proteinchromosome CDS52402 1287 - 0.539239
tig SFV_0410 trigger factorchromosome CDS427883 1299 + 0.511932
tpx SFV_1340 thiol peroxidasechromosome CDS1397130 507 - 0.512821
trxA SFV_3723 thioredoxin 1chromosome CDS3808228 435 - 0.485057
trxB SFV_0879 thioredoxin reductasechromosome CDS916550 966 - 0.535197
trxC SFV_2645 putative thioredoxin-like proteinchromosome CDS2712256 420 + 0.492857
yabH SFV_0049 putative DNA binding proteinchromosome CDS56350 816 + 0.529412
ybbJ SFV_0461 hypothetical proteinchromosome CDS488369 447 - 0.581656
ybbK SFV_0462 putative proteasechromosome CDS488824 918 - 0.523965
ybbN SFV_0465 putative thioredoxin-like proteinchromosome CDS491393 891 - 0.555556
ybeS SFV_0680 putative enzyme of polynucleotide modificationchromosome CDS716164 1428 - 0.485994
ybeW SFV_0676 putative dnaK proteinchromosome CDS711613 1671 + 0.502693
ybiY SFV_0807 putative pyruvate formate-lyase 2 activating enzymechromosome CDS842652 900 - 0.546667
ycaL SFV_0910 putative heat shock proteinchromosome CDS950968 789 + 0.489227
ydhD SFV_1676 hypothetical proteinchromosome CDS1712890 348 - 0.525862
yeaA SFV_1437 hypothetical proteinchromosome CDS1482624 414 + 0.478261
yeaZ SFV_1422 hypothetical proteinchromosome CDS1469559 696 + 0.558908
yedF SFV_1974 hypothetical proteinchromosome CDS2014297 234 + 0.482906
yeeD SFV_2071 hypothetical proteinchromosome CDS2091706 228 - 0.513158
yfcF SFV_2368 hypothetical proteinchromosome CDS2420513 645 - 0.51938
yfcG SFV_2369 putative S-transferasechromosome CDS2421293 648 + 0.510802
yfhE SFV_2575 hypothetical proteinchromosome CDS2639664 516 - 0.51938
ygcF SFV_2678 hypothetical proteinchromosome CDS2754863 672 + 0.514881
yggG SFV_2988 hypothetical proteinchromosome CDS3057317 978 + 0.52045
yggX SFV_3020 hypothetical proteinchromosome CDS3083983 276 + 0.474638
ygjD SFV_3104 putative O-sialoglycoprotein endopeptidasechromosome CDS3170420 1014 - 0.57002
yhbU SFV_3188 putative collagenasechromosome CDS3257349 996 + 0.572289
yhbV SFV_3189 hypothetical proteinchromosome CDS3258353 846 + 0.554374
yhfA SFV_3362 hypothetical proteinchromosome CDS3416546 405 - 0.518519
yhgI SFV_3422 hypothetical proteinchromosome CDS3478833 576 + 0.53125
yhhP SFV_3473 hypothetical proteinchromosome CDS3539684 246 - 0.54065
yibF SFV_3941 putative S-transferasechromosome CDS4043410 609 + 0.528736
yifB SFV_3735 putative 2-component regulatorchromosome CDS3823471 1521 + 0.506246
yiiF SFV_3605 hypothetical proteinchromosome CDS3685995 243 - 0.45679
yjjW SFV_4413 putative activating enzymechromosome CDS4548420 864 - 0.545139
yliJ SFV_0821 putative transferasechromosome CDS860005 579 - 0.533679
ynhD SFV_1705 putative ATP-binding component of a transport systemchromosome CDS1741660 747 - 0.502008
ynhE SFV_1706 hypothetical proteinchromosome CDS1742416 1488 - 0.517473
yqjG SFV_3146 putative transferasechromosome CDS3217822 987 + 0.515704
yrfI SFV_3406 hypothetical proteinchromosome CDS3460903 870 + 0.524138