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2024-05-18 12:19:10

Gene list

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COG category: Cell wall/membrane biogenesis
Organism: Shigella flexneri 5 str. 8401, 8401

Number of genes found: 190

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Shigella flexneri 5 str. 8401, 8401
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA SFV_2006 putative outer membrane pore proteinchromosome CDS2042933 888 + 0.453829
NA SFV_1751 putative outer membrane porin proteinchromosome CDS1791372 1101 + 0.44505
NA SFV_1499 hypothetical proteinchromosome CDS1541669 711 + 0.492264
NA SFV_2928 putative lipoproteinchromosome CDS2997143 756 - 0.511905
NA SFV_0310 putative Rhs-family proteinchromosome CDS325436 795 - 0.559748
NA SFV_2323 putative enzymechromosome CDS2372404 1140 + 0.518421
NA SFV_2009 putative outer membrane proteinchromosome CDS2045037 210 + 0.414286
NA SFV_2895 putative amidasechromosome CDS2955084 1254 - 0.535088
NA SFV_0311 putative Rhs-family proteinchromosome CDS326422 2313 - 0.596628
NA SFV_0869 hypothetical proteinchromosome CDS904613 1143 + 0.528434
NA SFV_3500 hypothetical proteinchromosome CDS3569806 1275 - 0.498039
NA SFV_1423 putative outer membrane proteinchromosome CDS1470294 582 + 0.541237
NA SFV_2327 hypothetical proteinchromosome CDS2377531 1506 + 0.510624
NA SFV_2134 hypothetical proteinchromosome CDS2163908 1053 + 0.533713
NA SFV_1877 tail assembly proteinchromosome CDS1927270 813 - 0.580566
NA SFV_0856 putative nucleotide di-P-sugar epimerase or dehydratasechromosome CDS890408 1050 - 0.53619
NA SFV_2075 putative enzyme of sugar metabolismchromosome CDS2095784 825 - 0.511515
NA SFV_2325 putative transformylasechromosome CDS2374515 1983 + 0.511851
NA SFV_2510 hypothetical proteinchromosome CDS2565551 1044 - 0.545019
NA SFV_2731 tail assembly proteinchromosome CDS2795778 813 + 0.580566
NA SFV_3092 putative kinasechromosome CDS3156296 1434 - 0.564156
NA SFV_1830 hypothetical proteinchromosome CDS1877463 1032 + 0.437016
NA SFV_0230 putative DNA transfer proteinchromosome CDS254481 1731 + 0.508377
NA SFV_1778 hypothetical proteinchromosome CDS1818830 981 + 0.48318
NA SFV_0630 putative Rhs-family proteinchromosome CDS662026 4665 - 0.590997
NA SFV_1343 hypothetical proteinchromosome CDS1399714 639 - 0.422535
NA SFV_2324 putative sugar transferasechromosome CDS2373547 969 + 0.496388
aefA SFV_0438 putative alpha helix proteinchromosome CDS460718 3363 + 0.519179
alr SFV_4160 alanine racemase 1chromosome CDS4295406 1080 - 0.557407
amiA SFV_2487 N-acetylmuramoyl-l-alanine amidase Ichromosome CDS2541990 870 + 0.501149
amiB SFV_4327 N-acetylmuramoyl-L-alanine amidase amiB precursorchromosome CDS4468701 1338 + 0.549327
ampC SFV_4309 beta-lactamase; penicillin resistancechromosome CDS4450792 1167 - 0.507284
asmA SFV_2123 suppressor of ompF assembly mutantschromosome CDS2148200 1854 - 0.52589
betT SFV_0325 high-affinity choline transportchromosome CDS342056 2034 + 0.548673
blc SFV_4308 outer membrane lipoproteinchromosome CDS4450170 534 - 0.533708
caiT SFV_0034 probable carnitine transporterchromosome CDS39399 1515 - 0.522772
cfa SFV_1683 cyclopropane fatty acyl phospholipid synthasechromosome CDS1720546 1149 + 0.482158
cpsB SFV_2106 mannose-1-phosphate guanyltransferasechromosome CDS2130570 1320 - 0.55303
cutF SFV_0176 copper homeostasis protein (lipoprotein)chromosome CDS205873 711 + 0.513361
dacA SFV_0694 penicillin-binding protein 5chromosome CDS730971 1284 + 0.490654
dacB SFV_3212 D-alanyl-D-alanine carboxypeptidasechromosome CDS3284803 1434 + 0.530683
dadX SFV_1197 alanine racemase 2, catabolicchromosome CDS1239252 1071 + 0.576097
dapA SFV_2523 dihydrodipicolinate synthasechromosome CDS2582754 879 - 0.516496
ddg SFV_2436 putative heat shock proteinchromosome CDS2492437 921 + 0.513572
ddlA SFV_0344 D-alanine-D-alanine ligase Achromosome CDS361857 1041 - 0.516811
ddlB SFV_0085 D-alanine-D-alanine ligase Bchromosome CDS100521 921 + 0.514658
dgkA SFV_4171 diacylglycerol kinasechromosome CDS4305262 369 - 0.517615
ftsI SFV_0077 peptidoglycan synthetasechromosome CDS89701 1767 + 0.539898
ftsQ SFV_0086 cell division proteinchromosome CDS101443 831 + 0.531889
galE SFV_0581 UDP-galactose-4-epimerasechromosome CDS609206 1017 + 0.54179
galF SFV_2099 UTP--glucose-1-P uridyltransferasechromosome CDS2120927 894 - 0.516779
galU SFV_1249 glucose-1-phosphate uridylyltransferasechromosome CDS1301190 909 + 0.469747
gidB SFV_3766 glucose-inhibited divisionchromosome CDS3855723 624 - 0.485577
glmS SFV_3755 L-glutamine:D-fructose-6-phosphate aminotransferasechromosome CDS3844506 1830 - 0.538798
glmU SFV_3756 N-acetyl glucosamine-1-phosphate uridyltransferasechromosome CDS3846497 1371 - 0.530999
gmd SFV_2110 GDP-D-mannose dehydratasechromosome CDS2134679 1122 - 0.542781
gtrB SFV_0257 bactoprenol glucosyl transferasechromosome CDS275917 924 - 0.425325
gutQ SFV_2797 hypothetical proteinchromosome CDS2866247 966 - 0.561077
hemM SFV_1223 HemMchromosome CDS1272480 624 - 0.516026
hlpA SFV_0161 histone-like proteinchromosome CDS191085 486 + 0.495885
imp SFV_0048 organic solvent tolerancechromosome CDS53741 2355 - 0.514225
kdsA SFV_1229 2-dehydro-3-deoxyphosphooctulonate aldolasechromosome CDS1277768 855 + 0.515789
kdsB SFV_0919 CTP:CMP-3-deoxy-D-manno-octulosonate transferasechromosome CDS961575 747 + 0.524766
kdtA SFV_3896 3-deoxy-D-manno-octulosonic-acid transferasechromosome CDS3998256 1278 - 0.539124
lepA SFV_2632 GTP-binding elongation factorchromosome CDS2699020 1800 - 0.536667
lgt SFV_2906 phosphatidylglycerol-prolipoprotein diacylglyceryl transferasechromosome CDS2972489 816 - 0.535539
lnt SFV_0670 apolipoprotein N-acyltransferasechromosome CDS705324 1539 + 0.558804
lolA SFV_0882 outer-membrane lipoprotein carrier protein precursorchromosome CDS922949 612 + 0.509804
lpp SFV_1700 murein lipoproteinchromosome CDS1737317 237 + 0.506329
lpxA SFV_0164 UDP-N-acetylglucosamine acetyltransferasechromosome CDS193163 789 + 0.525982
lpxB SFV_0165 lipid-A-disaccharide synthasechromosome CDS193951 1149 + 0.538729
lpxC SFV_0089 UDP-3-O-acyl N-acetylglucosamine deacetylasechromosome CDS104845 918 + 0.511983
lpxD SFV_0162 UDP-3-O-(3-hydroxymyristoyl)-glucosamine N-acyltransferasechromosome CDS191610 990 + 0.531313
lytB SFV_0023 penicillin tolerance proteinchromosome CDS25260 951 + 0.55205
mdoB SFV_4390 phosphoglycerol transferase Ichromosome CDS4530522 2025 - 0.520494
mdoH SFV_1061 membrane glycosyltransferasechromosome CDS1106206 2544 + 0.54717
mepA SFV_2397 penicillin-insensitive murein endopeptidasechromosome CDS2447580 825 - 0.552727
mltA SFV_2892 membrane-bound lytic murein transglycosylase Achromosome CDS2953517 1098 - 0.530965
mltB SFV_2804 membrane-bound lytic murein transglycosylase Bchromosome CDS2871388 1146 + 0.550611
mltC SFV_3022 membrane-bound lytic murein transglycosylase Cchromosome CDS3084320 1083 + 0.509695
mltE SFV_1200 murein transglycosylase Echromosome CDS1245246 726 + 0.508264
mraY SFV_0080 phospho-N-acetylmuramoyl-pentapeptidetransferasechromosome CDS94290 1083 + 0.528163
mrcA SFV_3401 penicillin-binding protein 1Achromosome CDS3454001 2553 + 0.5519
mrcB SFV_0134 penicillin-binding protein 1Bchromosome CDS156183 2535 + 0.549901
mrdA SFV_0691 penicillin-binding protein 2chromosome CDS726789 1902 + 0.527865
mreC SFV_3276 rod shape-determining proteinchromosome CDS3349124 1086 - 0.55709
mreD SFV_3275 rod shape-determining proteinchromosome CDS3348636 489 - 0.509202
murA SFV_3219 UDP-N-glucosamine 1-carboxyvinyltransferasechromosome CDS3291073 1260 - 0.53254
murB SFV_4045 UDP-N-acetylenolpyruvoylglucosamine reductasechromosome CDS4162994 1029 + 0.464529
murD SFV_0081 UDP-N-acetylmuramoylalanine-D-glutamate ligasechromosome CDS95375 1317 + 0.552771
murE SFV_0078 meso-diaminopimelate-adding enzymechromosome CDS91454 1488 + 0.568548
murF SFV_0079 D-alanine:D-alanine-adding enzymechromosome CDS92938 1359 + 0.548933
murG SFV_0083 UDP-N-acetylglucosamine:N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferasechromosome CDS97932 1068 + 0.557116
murI SFV_4040 glutamate racemasechromosome CDS4156624 858 + 0.516317
nanA SFV_3250 N-acetylneuraminate lyasechromosome CDS3322437 894 - 0.521253
nlpB SFV_2522 lipoprotein-34chromosome CDS2581703 1035 - 0.553623
nlpC SFV_1515 lipoproteinchromosome CDS1554860 465 + 0.490323
nlpD SFV_2756 lipoproteinchromosome CDS2823128 1140 + 0.523684
ompA SFV_0965 outer membrane protein 3achromosome CDS1014233 1047 - 0.532951
ompC SFV_2290 outer membrane protein 1bchromosome CDS2326757 1122 - 0.503565
ompF SFV_0931 outer membrane protein 1a (Ia;b;F)chromosome CDS978057 1089 - 0.477502
ompX SFV_0798 outer membrane protein Xchromosome CDS830492 516 + 0.513566
pal SFV_0595 peptidoglycan-associated lipoproteinchromosome CDS620766 522 - 0.51341
pbpC SFV_2566 putative peptidoglycan enzymechromosome CDS2630210 2049 - 0.562714
pbpG SFV_2210 penicillin-binding protein 7chromosome CDS2240425 933 - 0.505895
phoE SFV_0289 outer membrane pore protein E (E,Ic,NmpAB)chromosome CDS304312 1056 + 0.451705
pldA SFV_3677 outer membrane phospholipase Achromosome CDS3764795 870 - 0.511494
rfaD SFV_3909 ADP-L-glycero-D-mannoheptose-6-epimerasechromosome CDS4010956 933 - 0.50911
rfbA SFV_2096 glucose-1-phosphate thymidylyltransferasechromosome CDS2117633 879 - 0.435722
rfbB SFV_2098 dTDP-glucose 4,6 dehydratasechromosome CDS2119469 1086 - 0.443831
rfbC SFV_2095 dTDP-4-dehydrorhamnose 3,5-epimerasechromosome CDS2117083 546 - 0.377289
rfbD SFV_2097 dTDP-6-deoxy-L-mannose-dehydrogenasechromosome CDS2118570 900 - 0.492222
rfbG SFV_2092 dTDP-rhamnosyl transferasechromosome CDS2113993 906 - 0.30574
rfe SFV_3720 Undecaprenyl-phosphatealpha-N-acetylglucosaminyltransferasechromosome CDS3805299 1104 - 0.492754
rffG SFV_3716 dTDP-glucose 4,6-dehydratasechromosome CDS3800729 1068 - 0.536517
rffH SFV_3715 glucose-1-phosphate thymidylyltransferasechromosome CDS3799829 882 - 0.549887
rlpA SFV_0693 RlpAchromosome CDS729816 1089 + 0.574839
rlpB SFV_0685 RlpBchromosome CDS722820 582 + 0.524055
slp SFV_3520 outer membrane protein induced after carbon starvationchromosome CDS3591115 732 + 0.428962
slt SFV_4426 soluble lytic murein transglycosylasechromosome CDS4563420 1938 + 0.54644
slyB SFV_1660 putative outer membrane proteinchromosome CDS1697418 468 + 0.512821
spr SFV_2253 putative lipoproteinchromosome CDS2286875 567 + 0.467372
tolA SFV_0597 cell envelope integrity inner membrane protein TolAchromosome CDS622747 1242 - 0.522544
tolC SFV_3080 outer membrane channel precursor proteinchromosome CDS3144993 1482 + 0.51417
tonB SFV_1266 TonB proteinchromosome CDS1321277 783 + 0.532567
tsx SFV_0376 Tsxchromosome CDS394726 885 - 0.505085
vacJ SFV_2414 lipoprotein precursorchromosome CDS2466335 756 - 0.52381
waaC SFV_3907 lipopolysaccharide heptosyltransferase-1chromosome CDS4008904 993 - 0.500504
waaD SFV_3905 lipopolysaccharide 1,2-N- acetylglucosaminetransferasechromosome CDS4006521 1143 + 0.370079
waaF SFV_3908 ADP-heptose--lps heptosyltransferase IIchromosome CDS4009900 1047 - 0.538682
waaG SFV_3900 LPS alpha1,3-glucosyltransferasechromosome CDS4001777 1125 + 0.482667
waaI SFV_3906 lipid A-core, surface polymer ligasechromosome CDS4007699 1209 - 0.353184
waaJ SFV_3904 lipopolysaccharide 1,2-glucosyltransferasechromosome CDS4005499 1014 + 0.308679
waaL SFV_3902 Lipid A-core, surface polymer ligasechromosome CDS4003734 1008 + 0.310516
waaQ SFV_3899 lipopolysaccharide core biosynthesis proteinchromosome CDS4000758 1023 + 0.470186
wcaA SFV_2118 putative regulatorchromosome CDS2140821 840 - 0.515476
wcaC SFV_2116 putative glycosyl transferasechromosome CDS2139116 1218 - 0.54023
wcaE SFV_2114 putative colanic acid biosynthesis glycosyl transferasechromosome CDS2137278 633 - 0.462875
wcaG SFV_2109 putative nucleotide di-P-sugar epimerase or dehydratasechromosome CDS2133708 969 - 0.558308
wcaI SFV_2107 putative colanic biosynthesis glycosyl transferasechromosome CDS2132009 1224 - 0.552288
wcaJ SFV_2104 putative colanic acid biosynthsis UDP-glucose lipid carrier transferasechromosome CDS2127557 1395 - 0.538351
wcaL SFV_2101 putative colanic acid biosynthesis glycosyl transferasechromosome CDS2123400 1221 - 0.542179
wecB SFV_3718 UDP-N-acetyl glucosamine -2-epimerasechromosome CDS3803055 1131 - 0.525199
wecC SFV_3717 UDP-N-acetyl-D-mannosaminuronic acid dehydrogenasechromosome CDS3801796 1263 - 0.538401
wecE SFV_3713 putative regulatorchromosome CDS3798042 1131 - 0.544651
wecG SFV_3709 probable UDP-N-acetyl-D-mannosaminuronic acid transferasechromosome CDS3793622 741 - 0.534413
wza SFV_2121 putative polysaccharide export proteinchromosome CDS2144367 1125 - 0.536
wzzB SFV_2087 regulator of length of O-antigen component of lipopolysaccharide chainschromosome CDS2105659 1014 - 0.456607
wzzE SFV_3719 putative transport proteinchromosome CDS3804241 1047 - 0.524355
yabC SFV_0075 putative apolipoproteinchromosome CDS88382 942 + 0.552017
yaeF SFV_0177 hypothetical proteinchromosome CDS206738 834 - 0.483213
yaeL SFV_0159 hypothetical proteinchromosome CDS187149 1353 + 0.509239
yaeT SFV_0160 hypothetical proteinchromosome CDS188531 2433 + 0.503083
yafL SFV_0303 putative lipoproteinchromosome CDS317093 555 - 0.545946
yajG SFV_0409 putative polymerase/proteinasechromosome CDS426339 681 - 0.503671
ybdG SFV_0517 putative transportchromosome CDS546281 1248 - 0.475962
ybiO SFV_0792 putative transport proteinchromosome CDS823298 1944 - 0.528807
ybjT SFV_0857 putative dTDP-glucose enzymechromosome CDS891520 1431 - 0.547869
yccZ SFV_0992 putative function in exopolysaccharide productionchromosome CDS1041223 1161 - 0.504737
ycdQ SFV_1033 hypothetical proteinchromosome CDS1078450 1326 - 0.466063
ycfN SFV_1126 putative beta-glucosidasechromosome CDS1169057 825 + 0.527273
ycfW SFV_1138 putative kinasechromosome CDS1183141 1245 + 0.515663
ycgR SFV_1202 hypothetical proteinchromosome CDS1245973 735 - 0.504762
yciD SFV_1270 putative outer membrane proteinchromosome CDS1324271 639 + 0.500782
ycjG SFV_1341 putative muconate cycloisomerase Ichromosome CDS1397755 966 + 0.543478
ydhO SFV_1677 putative lipoproteinchromosome CDS1713572 828 + 0.481884
yeaF SFV_1433 hypothetical proteinchromosome CDS1478670 747 + 0.52075
yebA SFV_1858 hypothetical proteinchromosome CDS1904805 1323 - 0.521542
yegX SFV_2157 hypothetical proteinchromosome CDS2190635 822 - 0.479319
yehZ SFV_2207 putative transport system permease proteinchromosome CDS2235010 918 - 0.546841
yfhD SFV_2606 putative periplasmic binding transport proteinchromosome CDS2676516 1419 + 0.503171
yfiB SFV_2865 putative outer membrane proteinchromosome CDS2926491 483 - 0.507246
ygcY SFV_2669 putative glucarate dehydratasechromosome CDS2740174 1341 + 0.539896
ygeA SFV_2918 putative resistance proteinschromosome CDS2987269 1014 - 0.50789
yggB SFV_2970 putative transport proteinchromosome CDS3041810 861 - 0.497096
yhiI SFV_3488 hypothetical proteinchromosome CDS3554590 1068 - 0.590824
yiaD SFV_3535 putative outer membrane proteinchromosome CDS3603198 651 - 0.588326
yiaT SFV_3952 putative outer membrane proteinchromosome CDS4054272 741 + 0.48583
yibD SFV_3913 putative regulatorchromosome CDS4015797 840 + 0.45
yjcP SFV_4131 putative enzymechromosome CDS4261162 1467 + 0.556919
yjeP SFV_4316 putative periplasmic binding proteinchromosome CDS4458463 3312 - 0.555556
yjfG SFV_4258 putative ligasechromosome CDS4398494 1323 - 0.557823
yohG SFV_2214 putative channel/filament proteinschromosome CDS2243803 1527 - 0.544204
yohK SFV_2217 putative seritonin transporterchromosome CDS2247498 696 + 0.538793
yqhH SFV_3064 hypothetical proteinchromosome CDS3127775 258 + 0.476744
yraR SFV_3182 hypothetical proteinchromosome CDS3254075 636 - 0.548742
yrbH SFV_3227 putative isomerasechromosome CDS3297071 1008 + 0.517857
ytfB SFV_4281 hypothetical proteinchromosome CDS4427847 546 + 0.551282
ytfG SFV_4275 putative oxidoreductasechromosome CDS4422538 861 + 0.538908
ytfM SFV_4268 hypothetical proteinchromosome CDS4412467 1734 - 0.533449