Gene list
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COG category: Replication, recombination and repair
Organism: Yersinia enterocolitica subsp. enterocolitica 8081, 8081
Number of genes found: 191
Show UniProt / TrEMBL protein name | View in Fasta format (DNA) | View in Fasta format (Protein) | ||||
Yersinia enterocolitica subsp. enterocolitica 8081, 8081 | ||||||||
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Name | Locus tag | Product / Description | Genomic element | Type | Begin | Length | Strand | GC-content |
NA | YE1811 | transposase for insertion element IS1222 | chromosome | CDS | 2001724 | 750 | + | 0.56 |
NA | YE0998 | DNA repair protein RecN | chromosome | CDS | 1118560 | 1680 | - | 0.470833 |
NA | YE3320 | hypothetical protein | chromosome | CDS | 3629256 | 528 | - | 0.494318 |
NA | YE0568 | putative metalloenzyme | chromosome | CDS | 652890 | 798 | + | 0.494987 |
NA | YE0599 | transposase for insertion sequence element IS1660 | chromosome | CDS | 685300 | 1338 | - | 0.559791 |
NA | YE1780 | mutT-family protein | chromosome | CDS | 1975689 | 588 | - | 0.515306 |
NA | YE2529 | putative glycosidase | chromosome | CDS | 2726956 | 603 | + | 0.466003 |
NA | YE0224 | hypothetical protein | chromosome | CDS | 259672 | 555 | - | 0.513514 |
NA | YE1928 | DinJ-like protein | chromosome | CDS | 2105365 | 261 | + | 0.43295 |
NA | YE3830 | putative transposase for IS1664 element | chromosome | CDS | 4174815 | 819 | - | 0.465201 |
NA | YE3249 | insertion element IS1664 protein | chromosome | CDS | 3544855 | 516 | + | 0.507752 |
NA | YE1326 | hypothetical protein | chromosome | CDS | 1477421 | 549 | + | 0.499089 |
NA | YE3728 | hypothetical protein | chromosome | CDS | 4070730 | 354 | + | 0.502825 |
NA | YE1590 | insertion element IS1664 protein | chromosome | CDS | 1791980 | 516 | + | 0.515504 |
NA | YE3325 | putative transposase for IS1667 | chromosome | CDS | 3633371 | 1020 | + | 0.470588 |
NA | YE1818 | transposase for insertion sequence element IS1328 | chromosome | CDS | 2005427 | 1005 | + | 0.520398 |
NA | YE3129 | hypothetical protein | chromosome | CDS | 3402575 | 423 | - | 0.444444 |
NA | YE1906 | hypothetical protein | chromosome | CDS | 2089809 | 237 | + | 0.50211 |
NA | YE0748 | transposase for insertion sequence element IS1328 | chromosome | CDS | 874288 | 1005 | + | 0.517413 |
NA | YE0305 | putative transposase for insertion element IS1669 | chromosome | CDS | 360724 | 798 | + | 0.512531 |
NA | YE1359 | putative transposase for IS1667 | chromosome | CDS | 1514983 | 1020 | + | 0.47549 |
NA | YE4117 | putative phage integrase | chromosome | CDS | 4502800 | 1215 | - | 0.463374 |
NA | YE0048 | putative DNA ligase | chromosome | CDS | 58977 | 1698 | + | 0.464075 |
NA | YE1203 | putative transposase for insertion element IS1669 | chromosome | CDS | 1342839 | 798 | - | 0.512531 |
NA | YE1134 | putative transposase for IS1667 | chromosome | CDS | 1274153 | 1020 | - | 0.470588 |
NA | YE3412 | transposase for IS1668 | chromosome | CDS | 3724618 | 1470 | - | 0.530612 |
NA | YE1571 | hypothetical protein | chromosome | CDS | 1768726 | 2121 | + | 0.505422 |
NA | YE0453 | hypothetical protein | chromosome | CDS | 527869 | 294 | - | 0.506803 |
NA | YE2301 | phage-related membrane protein | chromosome | CDS | 2512327 | 399 | - | 0.433584 |
NA | YE0090 | transposase for insertion sequence element IS1660 | chromosome | CDS | 99139 | 1335 | - | 0.559551 |
NA | YE3041 | transposase for insertion element IS3 (pseudogene) | chromosome | CDS | 3309069 | 393 | + | 0.521628 |
NA | YE0977 | putative integrase/recombinase | chromosome | CDS | 1099313 | 1206 | + | 0.333333 |
NA | YE1529 | putative transposase for IS1667 | chromosome | CDS | 1713540 | 1020 | - | 0.469608 |
NA | YEP0001 | putative transposase | pYVe8081 | CDS | 628 | 660 | + | 0.477273 |
NA | YE0084 | bifunctional regulatory protein/DNA repair protein | chromosome | CDS | 92988 | 999 | + | 0.525526 |
NA | YE3116 | putative 6-O-methylguanine DNA methyltransferase family protein | chromosome | CDS | 3388337 | 390 | + | 0.474359 |
NA | YE1642 | putative deoxyribonuclease | chromosome | CDS | 1846761 | 810 | + | 0.488889 |
NA | YE1736 | putative transposase for insertion element IS1669 | chromosome | CDS | 1934671 | 798 | + | 0.512531 |
NA | YE3407 | transposase for IS1668 | chromosome | CDS | 3719323 | 1470 | - | 0.529252 |
NA | YE0296 | hypothetical protein | chromosome | CDS | 346420 | 786 | + | 0.515267 |
NA | YE3831 | insertion element IS1664 protein | chromosome | CDS | 4175669 | 525 | - | 0.504762 |
NA | YE1791 | transposase for insertion sequence element IS1328 | chromosome | CDS | 1985629 | 1005 | - | 0.516418 |
NA | YE1562 | transposase for insertion sequence element IS1660 | chromosome | CDS | 1756478 | 1335 | - | 0.559551 |
NA | YE1170 | putative integrase/recombinase protein | chromosome | CDS | 1308992 | 1119 | + | 0.470956 |
NA | YE3250 | putative transposase for IS1664 element | chromosome | CDS | 3545406 | 819 | + | 0.465201 |
NA | YEP0092 | transposase for insertion sequence element IS4 | pYVe8081 | CDS | 63019 | 1338 | - | 0.560538 |
NA | YE1681 | prophage encoded DNA modification methylase | chromosome | CDS | 1876566 | 1359 | - | 0.357616 |
NA | YEP0069 | transposase | pYVe8081 | CDS | 49605 | 1203 | + | 0.481297 |
NA | YE0538 | transposase for insertion sequence element IS1660 | chromosome | CDS | 613229 | 1335 | + | 0.5603 |
NA | YE2774 | transposase for insertion sequence element IS1660 | chromosome | CDS | 3010777 | 1338 | + | 0.559791 |
NA | YE3292 | putative transposase for insertion element IS1669 | chromosome | CDS | 3594117 | 798 | - | 0.512531 |
NA | YE3980 | putative hydrolase | chromosome | CDS | 4327043 | 558 | - | 0.487455 |
NA | YE3886 | putative DNA-binding protein | chromosome | CDS | 4247414 | 537 | - | 0.472998 |
NA | YE3878 | putative transposase for insertion sequence element IS1666 | chromosome | CDS | 4231986 | 300 | - | 0.46 |
NA | YE3877 | hypothetical protein located on insertion sequence element IS1666 | chromosome | CDS | 4231120 | 858 | - | 0.517483 |
NA | YE3170 | putative transposase for insertion element IS1669 | chromosome | CDS | 3440946 | 798 | + | 0.512531 |
NA | YE1586 | putative helicase IV | chromosome | CDS | 1787680 | 2055 | + | 0.482725 |
NA | YE3664 | putative MutT-family protein | chromosome | CDS | 3995983 | 633 | - | 0.49763 |
NA | YE0978 | putative integrase/recombinase | chromosome | CDS | 1100515 | 1359 | + | 0.337748 |
NA | YE3373 | putative integrase | chromosome | CDS | 3684016 | 1617 | - | 0.42919 |
NA | YE1161 | hypothetical protein | chromosome | CDS | 1299739 | 576 | + | 0.4375 |
NA | YE2632 | hypothetical protein | chromosome | CDS | 2848733 | 1764 | - | 0.315193 |
NA | YE2355 | exodeoxyribonuclease | chromosome | CDS | 2546079 | 666 | + | 0.487988 |
NA | YE1723 | hypothetical protein | chromosome | CDS | 1922690 | 447 | - | 0.465324 |
NA | YE1870 | putative transposase for IS1667 | chromosome | CDS | 2052949 | 1020 | - | 0.47451 |
NA | YE0647 | putative DNA-damage-inducible protein | chromosome | CDS | 746972 | 204 | + | 0.426471 |
NA | YE1527 | putative ATPase protein | chromosome | CDS | 1710309 | 1344 | + | 0.502976 |
NA | YE1423 | putative DEAD box helicase family protein | chromosome | CDS | 1595855 | 1758 | - | 0.518202 |
NA | YE3888 | hypothetical protein | chromosome | CDS | 4248437 | 1122 | - | 0.501783 |
NA | YE1130 | hypothetical protein | chromosome | CDS | 1269637 | 720 | + | 0.4875 |
NA | YE2378 | putative DEAD box family helicase | chromosome | CDS | 2565165 | 1827 | - | 0.525452 |
NA | YE3450 | phage integrase | chromosome | CDS | 3762254 | 984 | - | 0.420732 |
NA | YEP0003 | putative transposase | pYVe8081 | CDS | 1674 | 435 | + | 0.51954 |
NA | YE3064 | putative transposase for IS1667 | chromosome | CDS | 3330944 | 1020 | + | 0.473529 |
NA | YE3429 | hypothetical protein | chromosome | CDS | 3743402 | 423 | + | 0.536643 |
NA | YE1684 | putative prophage encoded two-component system histidine kinase | chromosome | CDS | 1879424 | 2379 | - | 0.308953 |
NA | YE3040 | transposase for insertion element IS3 | chromosome | CDS | 3308773 | 300 | + | 0.53 |
NA | YEP0073 | putative resolvase/recombinase | pYVe8081 | CDS | 52049 | 735 | - | 0.553742 |
NA | YE1163 | putative transposase for IS1667 | chromosome | CDS | 1303231 | 1020 | - | 0.473529 |
NA | YE0993 | putative prophage integrase | chromosome | CDS | 1114774 | 1230 | - | 0.456911 |
NA | YE3525 | hypothetical protein | chromosome | CDS | 3836292 | 258 | + | 0.453488 |
NA | YE1512 | hypothetical protein | chromosome | CDS | 1688517 | 1665 | + | 0.485285 |
acrB | YE4170 | DNA gyrase subunit B | chromosome | CDS | 4568018 | 2415 | - | 0.491511 |
b0183 | YE3270 | ribonuclease HII | chromosome | CDS | 3571100 | 597 | - | 0.492462 |
b4052 | YE3849 | replicative DNA helicase | chromosome | CDS | 4198141 | 1407 | - | 0.503909 |
b4058 | YE3845 | excinuclease ABC subunit A | chromosome | CDS | 4192071 | 2832 | + | 0.518008 |
b4170 | YE0375 | DNA mismatch repair protein | chromosome | CDS | 443198 | 1908 | + | 0.513627 |
b4372 | YE0562 | DNA polymerase III, psi subunit | chromosome | CDS | 647457 | 438 | + | 0.547945 |
cpeA | YE2758 | exodeoxyribonuclease I | chromosome | CDS | 2992871 | 1431 | + | 0.496157 |
csdA | YE0440 | cold-shock dead-box protein A | chromosome | CDS | 511217 | 1974 | + | 0.515198 |
dam | YE3972 | DNA adenine methylase | chromosome | CDS | 4316547 | 813 | - | 0.467405 |
dasF | YE0921 | ribonuclease HI | chromosome | CDS | 1048190 | 465 | - | 0.490323 |
dbpA | YE1785 | ATP-dependent RNA helicase | chromosome | CDS | 1979790 | 1383 | + | 0.517715 |
dcm | YE2362 | putative cytosine-specific modification methylase | chromosome | CDS | 2551018 | 1746 | + | 0.524628 |
dinA | YE0637 | DNA polymerase II | chromosome | CDS | 733066 | 2373 | - | 0.531395 |
dinG | YE2855 | putative ATP-dependent helicase DinG | chromosome | CDS | 3103372 | 2184 | - | 0.499084 |
dinP | YE3207 | DNA-damage-inducible protein P | chromosome | CDS | 3493491 | 1059 | - | 0.483475 |
dnaA | YE4173 | chromosomal replication initiator protein | chromosome | CDS | 4572805 | 1389 | - | 0.483081 |
dnaB2 | YE3514 | putative DNA helicase | chromosome | CDS | 3825720 | 1368 | - | 0.497076 |
dnaE | YE3269 | DNA polymerase III, alpha chain | chromosome | CDS | 3567507 | 3516 | - | 0.486633 |
dnaL | YE1211 | DNA ligase | chromosome | CDS | 1350408 | 2019 | + | 0.519564 |
dnaN | YE4172 | DNA polymerase III, beta subunit protein | chromosome | CDS | 4571700 | 1101 | - | 0.50772 |
dnaQ | YE0922 | DNA polymerase III, epsilon chain | chromosome | CDS | 1048780 | 717 | + | 0.467225 |
dnaX | YE3093 | DNA polymerase III subunit Tau (contains DNA polymerase III subunit Gamma) | chromosome | CDS | 3363766 | 1971 | - | 0.525622 |
dps | YE2843 | putative DNA-binding protein | chromosome | CDS | 3091166 | 510 | + | 0.437255 |
endA | YE3425 | endonuclease I | chromosome | CDS | 3740064 | 708 | + | 0.485876 |
exo | YE3297 | exodeoxyribonuclease IX | chromosome | CDS | 3599192 | 756 | + | 0.486772 |
exrB | YE3844 | single-strand binding protein | chromosome | CDS | 4191120 | 552 | - | 0.559783 |
fdv | YE0776 | DNA mismatch repair protein MutS | chromosome | CDS | 898643 | 2556 | - | 0.501956 |
fiS | YE3817 | DNA-binding protein Fis | chromosome | CDS | 4164615 | 297 | + | 0.464646 |
fpg | YE0066 | formamidopyrimidine-DNA glycosylase | chromosome | CDS | 74876 | 810 | + | 0.487654 |
gyrA | YE1395 | DNA gyrase subunit A | chromosome | CDS | 1559825 | 2658 | + | 0.508653 |
hepA | YE0636 | RNA polymerase associated helicase | chromosome | CDS | 730023 | 2907 | - | 0.511868 |
hid | YE1918 | integration host factor alpha-subunit | chromosome | CDS | 2099211 | 297 | + | 0.47138 |
himD | YE1541 | integration host factor beta-subunit | chromosome | CDS | 1730245 | 285 | + | 0.466667 |
holA | YE2998 | DNA polymerase III, delta subunit | chromosome | CDS | 3269571 | 1035 | + | 0.477295 |
holB | YE1641 | DNA polymerase III, delta' subunit | chromosome | CDS | 1845739 | 1008 | + | 0.532738 |
holC | YE0499 | DNA polymerase III, chi subunit | chromosome | CDS | 574532 | 450 | - | 0.56 |
hopD | YE3131 | DNA-binding protein HU-beta | chromosome | CDS | 3405222 | 273 | - | 0.479853 |
hrpA | YE2090 | ATP-dependent helicase | chromosome | CDS | 2286528 | 3843 | - | 0.496487 |
hrpB | YE0728 | ATP-dependent helicase | chromosome | CDS | 842483 | 2307 | + | 0.548765 |
hupA | YE0300 | DNA-binding protein HU-alpha | chromosome | CDS | 349906 | 276 | + | 0.438406 |
int | YE1692 | P2-like phage integrase | chromosome | CDS | 1886248 | 984 | + | 0.441057 |
int | YE2364 | putative phage integrase | chromosome | CDS | 2553376 | 1290 | + | 0.423256 |
int | YE0853 | integrase | chromosome | CDS | 981320 | 999 | - | 0.423423 |
int | YE1799 | phage integrase | chromosome | CDS | 1991800 | 1056 | - | 0.448864 |
lexB | YE0829 | RecA protein | chromosome | CDS | 956095 | 1065 | + | 0.462911 |
mfd | YE1709 | transcription-repair coupling factor | chromosome | CDS | 1904376 | 3447 | - | 0.51378 |
mmrA | YE0166 | putative DEAD-box helicase | chromosome | CDS | 198907 | 1077 | - | 0.480966 |
mttC | YE0262 | deoxyribonuclease TatD (pseudogene) | chromosome | CDS | 300973 | 783 | + | 0.494253 |
mutB | YE3443 | A/G-specific adenine glycosylase | chromosome | CDS | 3755473 | 1089 | + | 0.497704 |
mutH | YE3322 | DNA mismatch repair protein | chromosome | CDS | 3630481 | 687 | + | 0.515284 |
mutT | YE0682 | mutator protein MutT | chromosome | CDS | 788821 | 387 | + | 0.452196 |
mutU | YE0196 | DNA helicase II | chromosome | CDS | 230599 | 2163 | + | 0.524734 |
nfi | YE0298 | endonuclease V | chromosome | CDS | 348377 | 705 | + | 0.516312 |
nfo | YE1455 | endonuclease IV | chromosome | CDS | 1633555 | 846 | - | 0.50591 |
nfxD | YE3660 | topoisomerase IV subunit B | chromosome | CDS | 3992048 | 1896 | - | 0.507911 |
nth | YE1987 | endonuclease III | chromosome | CDS | 2169525 | 642 | - | 0.479751 |
ntpA | YE2396 | putative dATP pyrophosphohydrolase | chromosome | CDS | 2584623 | 423 | - | 0.496454 |
nudG | YE2255 | putative pyrophosphohydrolase | chromosome | CDS | 2463976 | 387 | + | 0.478036 |
ogt | YE2074 | putative methylated-DNA--protein-cysteine methyltransferase | chromosome | CDS | 2270141 | 519 | + | 0.481696 |
parC | YE3656 | DNA topoisomerase IV subunit A | chromosome | CDS | 3987565 | 2277 | - | 0.50022 |
phr | YE2957 | putative deoxyribodipyrimidine photolyase | chromosome | CDS | 3216448 | 1446 | - | 0.51314 |
polA | YE0021 | DNA polymerase I | chromosome | CDS | 27070 | 2799 | + | 0.469811 |
priA | YE0108 | primosomal protein n' | chromosome | CDS | 117622 | 2199 | - | 0.535243 |
priB | YE0393 | primosomal replication protein n | chromosome | CDS | 460832 | 321 | + | 0.479751 |
radC | YE0063 | putative DNA repair protein | chromosome | CDS | 73442 | 669 | + | 0.460389 |
rbaB | YE1007 | ATP-dependent RNA helicase | chromosome | CDS | 1126359 | 1326 | - | 0.502262 |
rdgC | YE3186 | recombination associated protein RdgC | chromosome | CDS | 3463646 | 912 | + | 0.45614 |
recC | YE3312 | exodeoxyribonuclease V gamma chain | chromosome | CDS | 3619451 | 3372 | - | 0.468268 |
recD | YE3309 | exodeoxyribonuclease V alpha chain | chromosome | CDS | 3610936 | 1902 | - | 0.503155 |
recF | YE4171 | DNA metabolism protein | chromosome | CDS | 4570452 | 1086 | - | 0.515654 |
recG | YE0043 | ATP-dependent DNA helicase | chromosome | CDS | 52840 | 2082 | - | 0.509606 |
recJ | YE3378 | single-stranded-DNA-specific exonuclease | chromosome | CDS | 3689253 | 1734 | - | 0.528258 |
recO | YE1019 | DNA repair protein | chromosome | CDS | 1139061 | 726 | + | 0.513774 |
recR | YE3091 | recombination protein RecR | chromosome | CDS | 3362773 | 606 | - | 0.531353 |
relB | YE0510 | RelB protein | chromosome | CDS | 582668 | 255 | + | 0.407843 |
rep | YE0163 | ATP-dependent DNA helicase Rep | chromosome | CDS | 193159 | 2025 | + | 0.481975 |
rhlE | YE2889 | putative ATP-dependent RNA helicase | chromosome | CDS | 3140549 | 1356 | - | 0.527286 |
rnt | YE2154 | ribonuclease T | chromosome | CDS | 2354147 | 648 | + | 0.492284 |
ruvA | YE2393 | Holliday junction DNA helicase | chromosome | CDS | 2582310 | 618 | - | 0.480583 |
ruvB | YE2392 | Holliday junction DNA helicase | chromosome | CDS | 2581270 | 1005 | - | 0.512438 |
ruvC | YE2394 | crossover junction endodeoxyribonuclease | chromosome | CDS | 2583050 | 522 | - | 0.52682 |
sbcC | YE3184 | exonuclease | chromosome | CDS | 3458414 | 3690 | + | 0.47832 |
sbcD | YE3183 | exonuclease SbcD | chromosome | CDS | 3457179 | 1239 | + | 0.49314 |
seqA | YE2968 | putative negative regulator of replication initiation | chromosome | CDS | 3231175 | 540 | - | 0.483333 |
supX | YE2199 | DNA topoisomerase I | chromosome | CDS | 2409236 | 2616 | - | 0.485856 |
tag | YE4152 | DNA-3-methyladenine glycosylase | chromosome | CDS | 4546786 | 573 | + | 0.488656 |
tnp | YEP0094 | transposase for IS1541 | pYVe8081 | CDS | 65333 | 459 | + | 0.461874 |
tnp | YE1001 | transposase for IS1541 | chromosome | CDS | 1122080 | 459 | + | 0.46841 |
tnp | YE1694 | transposase for IS1541 | chromosome | CDS | 1888605 | 459 | + | 0.46841 |
tnpA | YE1827 | IS1329 transposase A | chromosome | CDS | 2012692 | 333 | - | 0.462462 |
tnpA | YE3043 | IS1329 transposase A | chromosome | CDS | 3310600 | 333 | + | 0.462462 |
tnpA | YE2626 | IS1329 transposase A | chromosome | CDS | 2844799 | 333 | - | 0.462462 |
tnpA | YE0831 | IS1329 transposase A | chromosome | CDS | 957461 | 333 | + | 0.462462 |
tnpB | YE2625 | transposase B | chromosome | CDS | 2843960 | 750 | - | 0.492 |
tnpB | YE0832 | IS1329 transposase B | chromosome | CDS | 957883 | 750 | + | 0.490667 |
tnpB | YE1803 | transposase B | chromosome | CDS | 1993951 | 750 | - | 0.492 |
tnpB | YE3044 | transposase B | chromosome | CDS | 3311022 | 750 | + | 0.492 |
topB | YE2257 | DNA topoisomerase III | chromosome | CDS | 2464654 | 1929 | - | 0.490928 |
trp1400B | YE2629 | IS1400 transposase B | chromosome | CDS | 2846919 | 795 | - | 0.514465 |
trp1400B | YE1122 | IS1400 transposase B | chromosome | CDS | 1261887 | 795 | - | 0.516981 |
umuC | YE1732 | putative uv protection and mutation protein | chromosome | CDS | 1932015 | 1269 | - | 0.464145 |
ung | YE1002 | putative uracil-DNA glycosylase | chromosome | CDS | 1122673 | 687 | - | 0.490539 |
uvrB | YE2902 | excinuclease ABC subunit B | chromosome | CDS | 3153347 | 2013 | - | 0.501739 |
uvrC | YE1830 | excinuclease ABC subunit C | chromosome | CDS | 2014497 | 1833 | - | 0.448991 |
xerC | YE0194 | putative integrase/recombinase | chromosome | CDS | 228871 | 912 | + | 0.536184 |
xerD | YE3380 | integrase/recombinase | chromosome | CDS | 3691758 | 900 | - | 0.507778 |
xseA | YE1080 | exodeoxyribonuclease VII large subunit | chromosome | CDS | 1208595 | 1377 | - | 0.526507 |
xseB | YE3153 | exodeoxyribonuclease VII small subunit | chromosome | CDS | 3427349 | 255 | + | 0.52549 |
xth | YE2254 | exodeoxyribonuclease III | chromosome | CDS | 2463086 | 807 | + | 0.468401 |