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2024-05-18 13:18:52

Gene list

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COG category: Replication, recombination and repair
Organism: Escherichia coli UTI89, UTI89

Number of genes found: 203

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Escherichia coli UTI89, UTI89
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA UTI89_C5085 integrase-like proteinchromosome CDS4987411 1215 + 0.44856
NA UTI89_P037 hypothetical proteinpUTI89 CDS31120 1509 + 0.534791
NA UTI89_C4975 hypothetical proteinchromosome CDS4879325 891 - 0.539843
NA UTI89_C2915 putative transposase InsK for insertion sequence element IS150chromosome CDS2868865 723 - 0.49101
NA UTI89_C4933 hypothetical proteinchromosome CDS4833855 354 - 0.437853
NA UTI89_C5128 putative tail length tape measure protein precursorchromosome CDS5016637 3057 + 0.53353
NA UTI89_C2226 putative transposasechromosome CDS2167410 228 + 0.451754
NA UTI89_C2253 putative transposasechromosome CDS2194023 1197 + 0.577277
NA UTI89_C0038 transposasechromosome CDS36103 510 + 0.460784
NA UTI89_C2244 hypothetical proteinchromosome CDS2183044 1134 - 0.461199
NA UTI89_C2002 putative enzymechromosome CDS1918014 1911 - 0.55102
NA UTI89_C2986 bacteriophage V small terminase subunitchromosome CDS2924582 495 - 0.585859
NA UTI89_C2177 putative integrasechromosome CDS2070256 963 + 0.535826
NA UTI89_C4644 excision nuclease subunit Achromosome CDS4539822 2823 - 0.558271
NA UTI89_C2672 bacteriophage Nil2 gene P DnaB analoguechromosome CDS2626699 1377 - 0.524328
NA UTI89_P144 hypothetical proteinpUTI89 CDS113465 474 + 0.476793
NA UTI89_C2913 transposasechromosome CDS2868217 405 - 0.51358
NA UTI89_C1092 putative transposasechromosome CDS1084840 465 + 0.453763
NA UTI89_P039 hypothetical proteinpUTI89 CDS33531 348 + 0.566092
NA UTI89_C1481 putative DNA adenine methyltransferase encoded by prophage CP-933Ochromosome CDS1403529 1050 + 0.530476
NA UTI89_C2224 putative transposasechromosome CDS2166569 267 + 0.47191
NA UTI89_C0295 CP4-like integrasechromosome CDS305929 339 + 0.457227
NA UTI89_C0290 putative resolvasechromosome CDS302117 564 + 0.505319
NA UTI89_P075 hypothetical proteinpUTI89 CDS62243 684 + 0.573099
NA UTI89_C2987 hypothetical proteinchromosome CDS2925202 351 - 0.584046
NA UTI89_P021 putative transposase OrfA protein of insertion sequence IS629pUTI89 CDS16610 327 - 0.544343
NA UTI89_C0288 hypothetical proteinchromosome CDS297787 1839 - 0.32572
NA UTI89_P033 insertion sequence ATP-binding proteinpUTI89 CDS27760 756 - 0.537037
NA UTI89_C0966 putative phage integrasechromosome CDS947396 993 + 0.483384
NA UTI89_C2583 putative regulatorchromosome CDS2550775 543 - 0.535912
NA UTI89_C1267 prophage lambda integrasechromosome CDS1241467 1143 - 0.433946
NA UTI89_C1679 hypothetical proteinchromosome CDS1601240 144 + 0.354167
NA UTI89_C4938 hypothetical proteinchromosome CDS4840646 1047 - 0.377268
NA UTI89_P041 putative transposasepUTI89 CDS35977 783 + 0.503193
NA UTI89_C4880 putative DNA helicase, superfamily Ichromosome CDS4780097 3516 + 0.470705
NA UTI89_C2258 putative transposasechromosome CDS2198122 1023 - 0.526882
NA UTI89_P032 hypothetical proteinpUTI89 CDS27292 327 + 0.541284
NA UTI89_C0286 putative integrasechromosome CDS295228 1941 + 0.447707
NA UTI89_C0289 hypothetical proteinchromosome CDS299622 2148 - 0.3473
NA UTI89_C2204 prophage P4 integrasechromosome CDS2114161 1272 + 0.513365
NA UTI89_C5110 hypothetical proteinchromosome CDS5004054 1053 + 0.481481
NA UTI89_C2225 putative transposasechromosome CDS2166940 480 + 0.475
NA UTI89_C2257 insertion sequence ATP-binding proteinchromosome CDS2197343 783 - 0.500639
NA UTI89_C3009 hypothetical proteinchromosome CDS2939949 1173 + 0.44075
NA UTI89_C1089 putative P4-family integrasechromosome CDS1081137 1203 + 0.488778
NA UTI89_C2898 ATP-dependent RNA helicasechromosome CDS2854638 1335 + 0.544569
NA UTI89_P038 hypothetical proteinpUTI89 CDS33130 405 + 0.493827
NA UTI89_P006 transposase for IS26pUTI89 CDS3292 717 + 0.531381
NA UTI89_C1616 hypothetical proteinchromosome CDS1529156 309 - 0.508091
NA UTI89_C0918 putative phage tail proteinchromosome CDS915637 2808 + 0.56802
NA UTI89_P067 transposasepUTI89 CDS57183 1221 + 0.504505
NA UTI89_C3338 hypothetical proteinchromosome CDS3271152 417 + 0.53717
NA UTI89_C4914 hypothetical proteinchromosome CDS4811641 1134 + 0.460317
NA UTI89_C0563 prophage DLP12 integrasechromosome CDS569442 393 - 0.478372
NA UTI89_P044 IS2 OrfApUTI89 CDS40503 411 + 0.501217
alkA UTI89_C2344 3-methyl-adenine DNA glycosylase IIchromosome CDS2284814 849 - 0.553592
dam UTI89_C3885 DNA adenine methylasechromosome CDS3767745 837 - 0.492234
dbpA UTI89_C1614 ATP-independent RNA helicase DbpAchromosome CDS1526667 1374 + 0.521106
dcm UTI89_C2162 DNA cytosine methylasechromosome CDS2056997 1419 - 0.522199
dinG UTI89_C0802 probable ATP-dependent helicase DinGchromosome CDS795714 2151 + 0.542073
dinP UTI89_C0271 damage-inducible protein P; DNA polymerase IVchromosome CDS282897 1056 + 0.538826
dnaA UTI89_C4252 chromosomal replication initiator protein DnaAchromosome CDS4143894 1404 - 0.538462
dnaB UTI89_C4625 replicative DNA helicasechromosome CDS4518902 1452 + 0.527548
dnaC UTI89_C5067 DnaC proteinchromosome CDS4978006 738 - 0.504065
dnaE UTI89_C0199 DNA polymerase III alpha subunitchromosome CDS209927 3483 + 0.544358
dnaG UTI89_C3503 DNA primasechromosome CDS3438917 1746 + 0.52291
dnaN UTI89_C4251 DNA polymerase III, beta-subunitchromosome CDS4142789 1101 - 0.546776
dnaQ UTI89_C0234 DNA polymerase III epsilon chainchromosome CDS241026 741 + 0.512821
dnaX UTI89_C0497 DNA polymerase III subunit tauchromosome CDS506223 1932 + 0.572981
dps UTI89_C0816 stationary phase nucleoid protein Dpschromosome CDS811081 597 - 0.472362
endA UTI89_C3334 endonuclease I precursorchromosome CDS3267996 711 + 0.535865
exo UTI89_C3169 exodeoxyribonuclease IXchromosome CDS3085420 846 + 0.523641
exoX UTI89_C2046 exodeoxyribonuclease Xchromosome CDS1952808 663 + 0.515837
fimB UTI89_C5009 type 1 fimbriae regulatory protein FimBchromosome CDS4905700 603 + 0.427861
fimX UTI89_C0338 type 1 fimbriae regulatory protein FimXchromosome CDS349892 603 - 0.424544
fis UTI89_C3703 site-specific DNA inversion stimulation factor; DNA-binding protein; a trans activator for transcriptionchromosome CDS3629227 297 + 0.468013
gyrA UTI89_C2512 DNA gyrase subunit Achromosome CDS2473096 2628 - 0.537291
gyrB UTI89_C4249 DNA gyrase subunit Bchromosome CDS4139273 2418 - 0.547146
helD UTI89_C1028 DNA helicase IVchromosome CDS1021699 2148 + 0.520019
hepA UTI89_C0064 probable ATP-dependent RNA helicasechromosome CDS62198 2907 - 0.552804
himA UTI89_C1905 integration host factor (IHF), alpha subunitchromosome CDS1830839 300 - 0.5
himD UTI89_C0983 beta subunit of IHF transcriptional dual regulatorchromosome CDS968335 285 + 0.491228
holA UTI89_C0643 DNA polymerase III, delta subunitchromosome CDS652425 1032 - 0.528101
holB UTI89_C1226 DNA polymerase III, delta prime subunitchromosome CDS1200725 1005 + 0.542289
holC UTI89_C4865 DNA polymerase III, chi subunitchromosome CDS4765443 444 - 0.536036
holD UTI89_C5081 DNA polymerase III, psi subunitchromosome CDS4985505 414 + 0.584541
hrpA UTI89_C1635 ATP-dependent helicase HrpAchromosome CDS1557961 3903 + 0.539329
hrpB UTI89_C0162 ATP-dependent helicase HrpBchromosome CDS168106 2475 + 0.565657
hsdM UTI89_C5051 DNA methylase Mchromosome CDS4955458 1590 - 0.554088
hsdR UTI89_C5053 endonuclease Rchromosome CDS4957249 3510 - 0.543305
hsdS UTI89_C5050 HsdS, type I site-specific deoxyribonucleasechromosome CDS4954094 1368 - 0.440789
hupA UTI89_C3819 DNA-binding protein HU-alpha (HU-2)chromosome CDS3705769 273 - 0.483516
hupB UTI89_C0468 DNA-binding protein HU-beta, NS1 (HU-1)chromosome CDS475569 273 + 0.490842
insA UTI89_C0299 InsA proteinchromosome CDS312076 216 + 0.472222
insAcp3 UTI89_C4808 IS1 protein InsAchromosome CDS4702260 276 - 0.525362
insBcp3 UTI89_C4807 IS1 protein InsBchromosome CDS4701838 504 - 0.537698
insBcp5 UTI89_C3099 InsBcp5 proteinchromosome CDS3019477 504 - 0.541667
int UTI89_P048 site-specific recombinasepUTI89 CDS44473 741 + 0.576248
intB UTI89_C4878 prophage P4 integrasechromosome CDS4778383 1263 + 0.459224
intC UTI89_C2634 possible prophage integrasechromosome CDS2597497 1194 + 0.474037
intD UTI89_C0562 prophage DLP12 integrasechromosome CDS569114 354 - 0.488701
intO UTI89_C1457 putative integrase for prophage CP-933Ochromosome CDS1388571 1131 - 0.464191
istB UTI89_P070 IS21 putative ATP-binding proteinpUTI89 CDS59646 798 - 0.526316
lig UTI89_C2743 DNA ligasechromosome CDS2687928 2016 - 0.543155
mfd UTI89_C1242 transcription-repair coupling factor; mutation frequency declinechromosome CDS1215498 3510 - 0.545014
mrr UTI89_C5054 Mrr proteinchromosome CDS4960949 915 + 0.499454
mutH UTI89_C3234 DNA mismatch repair protein MutHchromosome CDS3160099 690 + 0.536232
mutL UTI89_C4770 MutL, enzyme in methyl-directed mismatch repairchromosome CDS4669221 1851 + 0.560238
mutM UTI89_C4178 formamidopyrimidine DNA glycosylasechromosome CDS4068871 810 - 0.546914
mutS UTI89_C3098 DNA mismatch repair protein MutSchromosome CDS3016651 2562 + 0.553864
mutT UTI89_C0108 mutator MutT proteinchromosome CDS113486 399 + 0.491228
mutY UTI89_C3351 A/G-specific adenine glycosylasechromosome CDS3280539 1083 + 0.5494
nei UTI89_C0712 endonuclease VIIIchromosome CDS718265 792 + 0.525253
nfi UTI89_C3821 endonuclease V (deoxyinosine 3'endoduclease)chromosome CDS3706861 672 - 0.587798
nfo UTI89_C2434 endonuclease IVchromosome CDS2392048 858 + 0.52331
nohA1 UTI89_C1311 Qin prophage packaging protein NU1-like proteinchromosome CDS1261468 549 + 0.499089
nth UTI89_C1823 endonuclease III; specific for apurinic and/or apyrimidinic siteschromosome CDS1751685 636 + 0.484277
ntpA UTI89_C2069 dATP pyrophosphohydrolasechromosome CDS1974939 444 - 0.527027
nudC UTI89_C3823 NADH pyrophosphatasechromosome CDS3708646 774 - 0.5323
nudE UTI89_C3895 ADP compounds hydrolase NudEchromosome CDS3778257 561 - 0.506239
nudH UTI89_C3232 (di)nucleoside polyphosphate hydrolasechromosome CDS3158884 531 - 0.491525
ogt UTI89_C1606 O-6-alkylguanine-DNA/cysteine-protein methyltransferasechromosome CDS1518442 516 - 0.532946
parC UTI89_C3446 topoisomerase IV subunit Achromosome CDS3381993 2259 - 0.550686
parE UTI89_C3464 topoisomerase IV subunit Bchromosome CDS3399243 1893 - 0.536714
pin UTI89_C0920 putative DNA-invertasechromosome CDS918974 600 - 0.486667
polA UTI89_C4452 DNA polymerase Ichromosome CDS4333123 2787 + 0.521708
polB UTI89_C0065 DNA polymerase IIchromosome CDS65268 2352 - 0.555697
priA UTI89_C4520 primosomal protein N'chromosome CDS4401610 2271 - 0.56583
priB UTI89_C4801 primosomal replication protein Nchromosome CDS4697243 315 + 0.520635
radC UTI89_C4182 DNA repair proteinchromosome CDS4070419 675 - 0.485926
rdgC UTI89_C0414 nonspecific DNA binding protein; nucleoid componentchromosome CDS423345 984 - 0.51626
recA UTI89_C3061 RecA proteinchromosome CDS2981100 1062 - 0.537665
recB UTI89_C3221 exodeoxyribonuclease V beta chainchromosome CDS3142897 3552 - 0.54223
recC UTI89_C3223 exodeoxyribonuclease V gamma chainchromosome CDS3149496 3369 - 0.535767
recD UTI89_C3220 exodeoxyribonuclease V alpha chainchromosome CDS3141071 1827 - 0.550082
recF UTI89_C4250 ssDNA and dsDNA binding, ATP bindingchromosome CDS4141716 1074 - 0.548417
recG UTI89_C4197 ATP-dependent DNA helicase RecGchromosome CDS4083709 2115 + 0.568794
recJ UTI89_C3277 single-stranded-DNA-specific exonuclease RecJchromosome CDS3215039 1734 - 0.568627
recN UTI89_C2950 DNA repair protein RecNchromosome CDS2895883 1662 + 0.519856
recO UTI89_C2886 protein interacts with RecR and possibly RecF proteinschromosome CDS2843488 729 - 0.541838
recQ UTI89_C4386 ATP-dependent DNA helicasechromosome CDS4270853 1836 + 0.542484
recR UTI89_C0500 recombination and repair protein RecRchromosome CDS508536 606 + 0.569307
rhlB UTI89_C4334 putative ATP-dependent RNA helicasechromosome CDS4224359 1266 - 0.521327
rhlE UTI89_C0798 putative ATP-dependent RNA helicase RhlEchromosome CDS793816 1362 + 0.563142
rnhA UTI89_C0233 RNase HI, degrades RNA of DNA-RNA hybrids, participates in DNA replicationchromosome CDS240503 579 - 0.483592
rnhB UTI89_C0198 RNAse HII, degrades RNA of DNA-RNA hybridschromosome CDS209294 597 + 0.557789
rnt UTI89_C1843 RNase T, degrades tRNAchromosome CDS1768508 648 + 0.546296
rsvB UTI89_P058 resolvasepUTI89 CDS51097 810 + 0.575309
rusA UTI89_C1298 Crossover junction endodeoxyribonuclease RusAchromosome CDS1255385 363 + 0.53168
ruvA UTI89_C2065 RuvA protein, Holliday junction helicase subunit Bchromosome CDS1972123 612 - 0.534314
ruvB UTI89_C2064 RuvB protein, Holliday junction helicase subunit Achromosome CDS1971104 1011 - 0.522255
ruvC UTI89_C2067 RuvC protein, Holliday junction nucleasechromosome CDS1973614 522 - 0.555556
sbcB UTI89_C2285 exodeoxyribonuclease Ichromosome CDS2222562 1476 + 0.500678
sbcC UTI89_C0417 exonuclease SbcCchromosome CDS426868 3144 - 0.536896
sbcD UTI89_C0418 ATP-dependent dsDNA exonucleasechromosome CDS430008 1203 - 0.532003
sbmC UTI89_C2284 DNA gyrase inhibitory proteinchromosome CDS2220644 474 - 0.474684
smf UTI89_C3730 hypothetical proteinchromosome CDS3650237 1125 - 0.505778
ssb UTI89_C4645 single strand DNA-binding proteinchromosome CDS4542835 600 + 0.563333
ssb UTI89_P092 single strand DNA-binding proteinpUTI89 CDS69932 567 + 0.567901
tag UTI89_C4089 DNA-3-methyladenine glycosylase Ichromosome CDS3980183 729 + 0.475995
tatD UTI89_C4426 magnesium-dependent DNasechromosome CDS4309969 795 + 0.545912
topA UTI89_C1543 DNA topoisomerase Ichromosome CDS1451953 2640 + 0.517424
topB UTI89_C1958 DNA topoisomerase IIIchromosome CDS1877252 1956 - 0.548057
traI UTI89_P138 DNA helicase IpUTI89 CDS105273 5271 + 0.599696
umuC UTI89_C1370 UmuC proteinchromosome CDS1303938 1269 + 0.507486
ung UTI89_C2902 uracil-DNA-glycosylasechromosome CDS2858320 690 + 0.52029
uvrB UTI89_C0777 excision nuclease subunit Bchromosome CDS776623 2022 + 0.532641
uvrC UTI89_C2114 excinuclease ABC subunit Cchromosome CDS2016621 1833 - 0.513912
uvrD UTI89_C4376 DNA helicase IIchromosome CDS4261272 2217 + 0.580965
wcaH UTI89_C2325 mannose-1-phosphate guanylyltransferase (GDP)chromosome CDS2263282 483 - 0.554865
xerC UTI89_C4374 integrase/recombinase XerCchromosome CDS4259630 897 + 0.541806
xerD UTI89_C3279 site-specific recombinasechromosome CDS3217513 897 - 0.532887
xseA UTI89_C2827 exodeoxyribonuclease VII large subunitchromosome CDS2770056 1377 + 0.542484
xseB UTI89_C0445 exonuclease VII, small subunitchromosome CDS455220 243 - 0.547325
xthA UTI89_C1945 exodeoxyribonuclease IIIchromosome CDS1865878 819 + 0.537241
yafM UTI89_C0267 hypothetical protein YafMchromosome CDS279540 498 + 0.415663
ybaV UTI89_C0470 hypothetical protein YbaV precursorchromosome CDS478055 372 + 0.540323
ybaZ UTI89_C0482 hypothetical protein YbaZchromosome CDS490112 411 - 0.547445
ybjD UTI89_C0880 hypothetical proteinchromosome CDS877258 1659 + 0.53044
ycaJ UTI89_C0907 putative polynucleotide enzymechromosome CDS908429 1344 + 0.534226
ycbY UTI89_C1013 hypothetical protein YcbYchromosome CDS1005164 2109 + 0.544334
ycfH UTI89_C1227 putative deoxyribonuclease YcfHchromosome CDS1201680 858 + 0.512821
ydjQ UTI89_C1935 hypothetical protein YdjQchromosome CDS1856977 888 + 0.503378
yeaB UTI89_C2009 hypothetical proteinchromosome CDS1922859 579 + 0.547496
yeeS1 UTI89_C2276 hypothetical proteinchromosome CDS2216127 477 + 0.582809
yeeS2 UTI89_C4994 hypothetical proteinchromosome CDS4894022 477 + 0.580713
yeeS3 UTI89_C1145 putative radC-like protein YeeSchromosome CDS1138479 477 + 0.584906
yejH UTI89_C2461 hypothetical protein YejHchromosome CDS2420682 1761 + 0.533788
yfaO UTI89_C2533 putative Nudix hydrolase YfaOchromosome CDS2500574 426 + 0.474178
yffH UTI89_C2793 hypothetical protein YffHchromosome CDS2732529 603 - 0.484245
yfgE UTI89_C2812 putative DNA replication factorchromosome CDS2753899 747 - 0.534137
yghR UTI89_C3406 hypothetical proteinchromosome CDS3343266 771 - 0.525292
ygjF UTI89_C3506 G/U mismatch-specific DNA glycosylasechromosome CDS3442777 507 - 0.530572
yhbQ UTI89_C3582 hypothetical protein YhbQchromosome CDS3519801 303 + 0.541254
yhdJ UTI89_C3704 hypothetical adenine-specific methylase YhdJchromosome CDS3629605 891 + 0.481481
yhhF UTI89_C3980 hypothetical proteinchromosome CDS3870715 597 + 0.541039
yicF UTI89_C4191 hypothetical DNA ligase-like protein YicFchromosome CDS4078020 1689 - 0.528123
yjjV UTI89_C5148 putative deoxyribonuclease YjjVchromosome CDS5037427 780 + 0.544872
ymfB UTI89_C1263 putative hydrolase (Nudix family)chromosome CDS1238807 462 - 0.510823
ynjG UTI89_C1955 CTP pyrophosphohydrolasechromosome CDS1874951 408 + 0.551471
yqiE UTI89_C3468 ADP-ribose pyrophosphatasechromosome CDS3403020 630 - 0.507937
yraN UTI89_C3574 hypothetical protein YraNchromosome CDS3515230 396 + 0.54798
yrdD UTI89_C3728 hypothetical protein YrdDchromosome CDS3649221 543 - 0.497238