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2024-05-18 07:31:16

Gene list

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COG category: Replication, recombination and repair
Organism: Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150, ATCC 9150

Number of genes found: 175

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Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150, ATCC 9150
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA SPA2624 putative phage genechromosome CDS2722149 813 - 0.501845
NA SPA0099 putative IS element transposasechromosome CDS115663 441 - 0.460317
NA SPA1535 hypothetical proteinchromosome CDS1608842 882 + 0.556689
NA SPA1183 integrasechromosome CDS1256195 402 + 0.445274
NA SPA2601 probable bacteriophage integrasechromosome CDS2696026 759 + 0.45191
NA SPA2794 hypothetical proteinchromosome CDS2890310 891 - 0.527497
NA SPA1002 putative phage integrase proteinchromosome CDS1075444 330 - 0.487879
NA SPA2592 putative exonucleasechromosome CDS2691309 585 - 0.439316
NA SPA0038 hypothetical proteinchromosome CDS42904 1248 + 0.498397
NA SPA2466 hypothetical proteinchromosome CDS2565453 198 - 0.525253
NA SPA2600 phage integrasechromosome CDS2694468 1026 + 0.495127
NA SPA3994 hypothetical proteinchromosome CDS4148231 438 - 0.3379
NA SPA2025 probable DNA recombinasechromosome CDS2108350 567 - 0.504409
NA SPA0518 hypothetical proteinchromosome CDS588947 555 + 0.544144
NA SPA2465 hypothetical proteinchromosome CDS2564946 282 - 0.446809
NA SPA4258 hypothetical proteinchromosome CDS4432586 447 - 0.447427
NA SPA0100 putative IS element transposasechromosome CDS116123 1209 + 0.488834
NA SPA4312 hypothetical proteinchromosome CDS4481122 267 + 0.52809
NA SPA2457 hypothetical proteinchromosome CDS2555725 168 - 0.488095
NA SPA2408 hypothetical proteinchromosome CDS2512580 297 - 0.417508
NA SPA2456 hypothetical proteinchromosome CDS2555289 378 + 0.515873
NA SPA1851 probable integrase remnantchromosome CDS1925530 378 + 0.460317
NA SPA1543 putative MutT-family proteinchromosome CDS1617971 417 + 0.568345
NA SPA4313 hypothetical proteinchromosome CDS4481469 678 + 0.536873
NA SPA2591 DNA adenine methylasechromosome CDS2690452 861 - 0.465738
NA SPA1011 putative cytoplasmic proteinchromosome CDS1083950 369 - 0.474255
NA SPA4301 hypothetical proteinchromosome CDS4471027 159 + 0.496855
NA SPA2759 hypothetical proteinchromosome CDS2859762 219 + 0.534247
NA SPA2170 putative transposasechromosome CDS2260150 219 + 0.47032
ada SPA0599 ADA regulatory proteinchromosome CDS681073 1062 + 0.610169
alkA SPA0742 DNA-3-methyladenine glycosidase IIchromosome CDS826409 870 + 0.612644
alkB SPA0600 AlkB proteinchromosome CDS682137 651 + 0.589862
dam SPA3349 DNA adenine methylasechromosome CDS3444404 837 - 0.487455
dbpA SPA1230 ATP-dependent RNA helicase, stimulated by 23S rRNAchromosome CDS1297118 1374 + 0.556041
dcm SPA0878 DNA-cytosine methyltransferasechromosome CDS963180 1431 + 0.543676
deaD SPA3147 ATP-dependent RNA helicasechromosome CDS3254940 1890 - 0.579365
dinG SPA1932 LexA regulated (SOS) repair enzymechromosome CDS2011570 2145 - 0.544056
dinP SPA2442 DNA polymerase IVchromosome CDS2537619 1056 - 0.516098
dnaA SPA3682 chromosomal replication initiation proteinchromosome CDS3825575 1401 - 0.52748
dnaB SPA4063 replicative DNA helicasechromosome CDS4221363 1416 + 0.550141
dnaC SPA4357 DNA replication protein DnaCchromosome CDS4535361 738 - 0.50542
dnaE SPA0238 DNA polymerase III subunit alphachromosome CDS273694 3483 + 0.559575
dnaG SPA3078 DNA primasechromosome CDS3184964 1746 + 0.517755
dnaN SPA3681 DNA polymerase III subunit betachromosome CDS3824470 1101 - 0.571299
dnaQ SPA2505 DNA polymerase III subunit epsilonchromosome CDS2604893 732 - 0.51776
dnaX SPA2238 DNA polymerase III subunits gamma and tauchromosome CDS2330636 1929 - 0.591498
endA SPA2956 endonuclease Ichromosome CDS3064763 708 + 0.562147
exoX SPA0991 exodeoxyribonuclease Xchromosome CDS1065337 699 - 0.517883
fis SPA3252 DNA-binding protein Fischromosome CDS3362785 297 + 0.464646
gp12 SPA2410 DNA replication (helicase)chromosome CDS2513660 1437 - 0.501044
gp18 SPA2411 DNA replicationchromosome CDS2515086 900 - 0.452222
gyrA SPA0592 DNA gyrase subunit Achromosome CDS668921 2637 + 0.559348
gyrB SPA3679 DNA gyrase subunit Bchromosome CDS3820806 2415 - 0.554865
helD SPA1775 helicase IV (75 kD helicase)chromosome CDS1829835 2055 - 0.549878
hepA SPA0097 ATP-dependent helicase HepAchromosome CDS109892 2907 - 0.568627
himA SPA1504 integration host factor alpha subunitchromosome CDS1579472 300 - 0.483333
himD SPA1816 integration host factor beta subunitchromosome CDS1884586 285 - 0.501754
hlyE SPA1306 haemolysin HlyEchromosome CDS1386108 918 - 0.391068
holA SPA2088 DNA polymerase III subunit deltachromosome CDS2173944 1032 + 0.573643
holB SPA1650 DNA polymerase III subunit deltachromosome CDS1714925 1005 - 0.593035
holC SPA4277 DNA polymerase III subunit chichromosome CDS4449941 483 - 0.536232
holD SPA4371 DNA polymerase III subunit psichromosome CDS4544838 438 + 0.59589
hrpA SPA1245 ATP-dependent helicase HrpAchromosome CDS1313982 3903 + 0.53651
hrpB SPA0195 ATP-dependent helicase HrpBchromosome CDS222535 2475 + 0.592727
hsdM SPA4289 DNA methyltransferase SptAIM; protects DNA against PvuII endonucleasechromosome CDS4462603 996 - 0.38253
hupA SPA4007 histone like DNA-binding protein HU-alpha (NS2) (HU-2)chromosome CDS4159015 273 + 0.47619
hupB SPA2271 DNA-binding protein HU-betachromosome CDS2364731 273 - 0.494505
int SPA2431 integrasechromosome CDS2526419 1164 + 0.4811
int SPA4288 integrasechromosome CDS4461290 1260 + 0.469048
ligA SPA0438 DNA ligasechromosome CDS506610 2016 + 0.56994
mfd SPA1634 transcription-repair coupling factor (TrcF)chromosome CDS1697150 3447 + 0.570641
mod SPA2366 type III restriction-modification system StyLTI enzyme modchromosome CDS2467763 1959 - 0.465033
mug SPA3080 G/U mismatch-specific DNA glycosylasechromosome CDS3188830 507 - 0.530572
mutH SPA2870 DNA mismatch repair proteinchromosome CDS2981214 696 + 0.577586
mutL SPA4176 DNA mismatch repair proteinchromosome CDS4351524 1857 + 0.580506
mutM SPA3578 formamidopyrimidine-DNA glycosylasechromosome CDS3709790 810 - 0.546914
mutS SPA2766 DNA mismatch repair proteinchromosome CDS2863287 2568 + 0.571262
mutT SPA0139 7,8-dihydro-8-oxoguanine-triphosphatasechromosome CDS163051 396 + 0.517677
mutY SPA2973 A/G-specific adenine glycosylasechromosome CDS3078044 1053 + 0.547009
nei SPA2015 endonuclease VIII, DNA N-glycosylase with an AP lyase activitychromosome CDS2095830 792 - 0.527778
nfi SPA4005 putative endonucleasechromosome CDS4157525 672 + 0.584821
nfo SPA0648 endonuclease IVchromosome CDS727745 858 - 0.532634
nth SPA1400 endonuclease IIIchromosome CDS1483105 636 + 0.518868
ntpA SPA0969 dATP pyrophosphohydrolasechromosome CDS1042777 453 + 0.534216
nudC SPA4003 NADH pyrophosphatasechromosome CDS4155637 774 + 0.554264
ogt SPA1225 O6-methylguanine-DNA-alkyltransferasechromosome CDS1292594 516 - 0.560078
parC SPA3043 DNA topoisomerase IV subunit Achromosome CDS3147527 2259 - 0.560425
parE SPA3050 DNA topoisomerase IV subunit Bchromosome CDS3154542 1893 - 0.557845
phrB SPA2032 deoxyribodipyrimidine photolyasechromosome CDS2114344 1422 - 0.568214
pin SPA2563 inversion of adjacent DNA; at locus of e14 elementchromosome CDS2669604 219 - 0.525114
polA SPA3840 DNA polymerase Ichromosome CDS3984210 2787 + 0.538572
polB SPA0098 DNA polymerase IIchromosome CDS112972 2352 - 0.566752
priA SPA3938 primosome assembly protein PriAchromosome CDS4081406 2199 - 0.591633
priB SPA4209 primosomal replication protein Nchromosome CDS4379946 315 + 0.536508
priC SPA2241 primosomal replication protein Nchromosome CDS2333828 528 + 0.589015
radC SPA3581 DNA repair protein RadCchromosome CDS3711339 666 - 0.525526
rdgC SPA2331 recombination associated proteinchromosome CDS2429321 795 + 0.548428
recA SPA2687 recombinase Achromosome CDS2790275 1062 - 0.542373
recB SPA2859 exonuclease V subunitchromosome CDS2963740 3546 - 0.559222
recC SPA2861 exonuclease V subunitchromosome CDS2970344 3372 - 0.534698
recD SPA2858 exonuclease V alpha-subunitchromosome CDS2961908 1836 - 0.584423
recF SPA3680 recombination protein Fchromosome CDS3823249 1074 - 0.547486
recG SPA3596 ATP-dependent DNA helicasechromosome CDS3725540 2082 + 0.583573
recJ SPA2910 single-stranded DNA-specific exonucleasechromosome CDS3019569 1734 - 0.570358
recN SPA2543 DNA repair proteinchromosome CDS2641062 1662 + 0.545728
recO SPA0286 DNA repair protein RecOchromosome CDS322754 729 + 0.552812
recQ SPA3799 ATP-dependent DNA helicasechromosome CDS3940795 1830 + 0.551366
recR SPA2236 recombination protein RecRchromosome CDS2329656 606 - 0.610561
relB SPA4249 RelB proteinchromosome CDS4421425 243 + 0.497942
rep SPA3753 ATP-dependent DNA helicasechromosome CDS3897318 2025 + 0.528395
rhlE SPA1933 putative ATP-dependent RNA helicase rhlEchromosome CDS2013921 1362 - 0.5837
rnhA SPA2506 ribonuclease Hchromosome CDS2605688 468 + 0.510684
rnhB SPA0237 ribonuclease HIIchromosome CDS273074 597 + 0.552764
rnt SPA1419 ribonuclease Tchromosome CDS1499948 648 + 0.53858
rus SPA2401 hypothetical proteinchromosome CDS2510504 363 - 0.482094
ruvA SPA0974 Holliday junction DNA helicase motor proteinchromosome CDS1046420 612 + 0.553922
ruvB SPA0975 Holliday junction DNA helicase RuvBchromosome CDS1047040 1011 + 0.573689
ruvC SPA0971 Holliday junction resolvasechromosome CDS1044036 522 + 0.551724
sbcB SPA0804 exodeoxyribonuclease Ichromosome CDS899929 1431 - 0.539483
sbcC SPA2328 exonuclease SbcCchromosome CDS2423665 3141 + 0.58389
sbcD SPA2327 exonuclease SbcDchromosome CDS2422466 1203 + 0.560266
sbmC SPA0810 putative DNA gyrase inhibitory proteinchromosome CDS909763 468 + 0.512821
seqA SPA2044 seqA proteinchromosome CDS2130811 543 - 0.513812
smf SPA3272 hypothetical proteinchromosome CDS3382067 1125 - 0.537778
srmB SPA0275 ATP-dependent RNA helicase SrmBchromosome CDS310922 1335 - 0.54382
ssb SPA4072 single-strand DNA-binding proteinchromosome CDS4231058 531 + 0.595104
tag SPA3494 3-methyladenine DNA glycosylase I, constitutivechromosome CDS3616979 582 + 0.525773
tatD SPA3817 putative deoxyribonucleasechromosome CDS3960353 783 + 0.545338
tnpA SPA1636 transposase for insertion sequence element IS200chromosome CDS1701838 459 - 0.45098
tnpA SPA3391 transposase for insertion sequence element IS200chromosome CDS3500580 459 - 0.457516
tnpA SPA4226 transposase for insertion sequence element IS200chromosome CDS4395592 459 - 0.457516
tnpA SPA3737 transposase for insertion sequence element IS200chromosome CDS3881886 459 - 0.466231
tnpA SPA0957 transposase for insertion sequence element IS200chromosome CDS1029408 459 - 0.448802
tnpA SPA2900 transposase for insertion sequence element IS200chromosome CDS3011905 459 - 0.457516
topA SPA1162 DNA topoisomerase Ichromosome CDS1229952 2598 + 0.539261
topB SPA1546 DNA topoisomerase IIIchromosome CDS1620234 1950 - 0.561026
umuC SPA0873 DNA polymerase IVchromosome CDS957806 1269 + 0.545311
ung SPA0271 uracil-DNA glycosylasechromosome CDS307862 690 - 0.555072
uvrA SPA4071 excinuclease ABC subunit Achromosome CDS4227985 2826 - 0.572541
uvrB SPA1954 excinuclease ABC subunit Bchromosome CDS2033616 2022 - 0.55094
uvrC SPA0923 excinuclease ABC subunit Cchromosome CDS999971 1833 + 0.536279
uvrD SPA3792 DNA helicase IIchromosome CDS3933756 2163 + 0.583449
vsr SPA0879 patch repair proteinchromosome CDS964591 471 + 0.569002
wcaH SPA0759 putative O-antigen biosynthesis proteinchromosome CDS847122 474 + 0.603376
xerC SPA3790 tyrosine recombinasechromosome CDS3932002 903 + 0.564784
xerD SPA2912 tyrosine recombinasechromosome CDS3022045 897 - 0.539576
xni SPA2836 exonuclease IXchromosome CDS2941293 756 + 0.555556
xseA SPA0355 exodeoxyribonuclease VII large subunitchromosome CDS418782 1350 - 0.587407
xseB SPA2299 exodeoxyribonuclease VII small subunitchromosome CDS2395392 243 + 0.54321
xthA SPA1542 exodeoxyribonuclease IIIchromosome CDS1617092 807 + 0.521685
yafM SPA4385 hypothetical proteinchromosome CDS4558639 492 + 0.487805
ybaV SPA2269 hypothetical proteinchromosome CDS2362045 375 - 0.525333
ybaZ SPA2256 putative methylated-DNA methyltransferasechromosome CDS2349112 390 + 0.553846
ybjD SPA1860 hypothetical proteinchromosome CDS1936152 1659 - 0.556359
ycaJ SPA1836 conserevd hypothetical proteinchromosome CDS1908956 1344 - 0.56994
ycfH SPA1649 hypothetical proteinchromosome CDS1714117 798 - 0.532581
yeaB SPA1048 hypothetical proteinchromosome CDS1119020 579 - 0.585492
yejH SPA0627 putative helicasechromosome CDS704812 1761 - 0.567859
yfaO SPA0568 hypothetical proteinchromosome CDS642269 426 - 0.497653
yffH SPA0392 hypothetical proteinchromosome CDS463102 576 + 0.489583
yfgE SPA0371 DNA replication initiation factorchromosome CDS436774 726 + 0.533058
ygdP SPA2869 dinucleoside polyphosphate hydrolasechromosome CDS2980001 531 - 0.506591
yhbQ SPA3140 hypothetical proteinchromosome CDS3248843 318 + 0.54717
yhhF SPA3423 hypothetical proteinchromosome CDS3531176 597 + 0.567839
yhhM SPA3425 hypothetical proteinchromosome CDS3532053 372 - 0.532258
yibL SPA3541 hypothetical proteinchromosome CDS3667655 363 + 0.506887
yicF SPA3591 DNA ligasechromosome CDS3719815 1686 - 0.561684
yjjV SPA4378 hypothetical proteinchromosome CDS4550549 774 + 0.596899
ymfB SPA1615 putative MutT-family proteinchromosome CDS1676283 462 + 0.52381
yoaA SPA1052 putative ATP-dependent helicasechromosome CDS1121708 1911 + 0.562009
yqgF SPA2960 Holliday junction resolvase-like proteinchromosome CDS3068024 417 + 0.556355
yqiE SPA3054 hypothetical proteinchromosome CDS3158314 633 - 0.532385
yraN SPA3134 hypothetical proteinchromosome CDS3245439 396 + 0.568182
yrdD SPA3270 hypothetical proteinchromosome CDS3381053 543 - 0.52302
yrfE SPA3359 putative NUDIX hydrolasechromosome CDS3455011 597 - 0.522613