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2024-05-18 05:57:07

Gene list

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COG category: Transcription
Organism: Yersinia pestis KIM, KIM

Number of genes found: 252

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Yersinia pestis KIM, KIM
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA y1813 regulatorchromosome CDS1992186 450 - 0.44
NA y2373 DEOR-type transcriptional regulatorchromosome CDS2619352 771 + 0.500648
NA y1995 hypothetical proteinchromosome CDS2196053 840 - 0.372619
NA y1691 transcriptional regulator LYSR-typechromosome CDS1865262 942 - 0.522293
NA y4092 hypothetical proteinchromosome CDS4541897 456 + 0.519737
NA y0421 hypothetical proteinchromosome CDS469576 438 - 0.484018
NA y1949 transcriptional regulator LYSR-typechromosome CDS2151178 933 + 0.501608
NA y3231 hypothetical proteinchromosome CDS3557149 1083 - 0.481071
NA y1464 transcriptional regulatorchromosome CDS1621458 879 + 0.49033
NA y0902 hypothetical proteinchromosome CDS1010428 774 - 0.44832
NA y4095 hypothetical proteinchromosome CDS4543500 645 - 0.534884
NA y2469 AraC-type regulatory proteinchromosome CDS2732943 879 + 0.433447
NA y1038 LRP-like transcriptional regulatorchromosome CDS1170276 462 + 0.469697
NA y0181 transcriptional regulatorchromosome CDS185744 876 + 0.343607
NA y2579 transcriptional regulatorchromosome CDS2839990 888 - 0.495495
NA y3498 AraC-type regulatory proteinchromosome CDS3880470 894 - 0.485459
NA y3115 hypothetical proteinchromosome CDS3426430 261 + 0.494253
NA y2239 enzymechromosome CDS2467147 1905 - 0.506562
NA y0878 transcriptional regulatorchromosome CDS986875 945 - 0.478307
NA y2375 aminotransferasechromosome CDS2622569 1188 - 0.472222
NA y0843 transcriptional regulatorchromosome CDS942813 999 - 0.502503
NA y0109 acetyltransferasechromosome CDS119050 924 - 0.50974
NA y3192 hypothetical proteinchromosome CDS3514207 705 - 0.334752
NA y2877 transcriptional regulator LYSR-typechromosome CDS3177250 873 - 0.507446
NA y2012 hypothetical proteinchromosome CDS2218967 324 + 0.459877
NA y1164 regulatory proteinchromosome CDS1311511 618 + 0.357605
NA y0053 transcriptional regulatorchromosome CDS65442 1296 - 0.492284
NA y1596 transcriptional regulatorchromosome CDS1764852 786 + 0.489822
NA y3260 hypothetical proteinchromosome CDS3594045 201 + 0.41791
NA y1876 regulatorchromosome CDS2072897 792 + 0.441919
NA y1145 hypothetical proteinchromosome CDS1291754 855 - 0.559064
NA y3187 transcriptional regulatorchromosome CDS3509327 909 - 0.49945
NA y2109 transcriptional regulator LYSR-typechromosome CDS2325696 924 + 0.453463
NA y1619 transcriptional regulatorchromosome CDS1787503 1137 + 0.485488
NA y0009 hypothetical proteinchromosome CDS9062 204 + 0.514706
NA Y1022 hypothetical proteinpMT-1 CDS14573 1560 - 0.514744
NA Y1024.S hypothetical proteinpMT-1 CDS16895 669 + 0.559043
NA y0636 hypothetical proteinchromosome CDS719590 477 + 0.444444
NA y1304 hypothetical proteinchromosome CDS1446332 840 - 0.492857
NA y3267 hypothetical proteinchromosome CDS3598579 372 - 0.438172
NA y3510 transcriptional regulator LYSR-typechromosome CDS3892686 912 - 0.530702
NA y1807 hypothetical proteinchromosome CDS1987958 573 + 0.464223
NA y0699 hypothetical proteinchromosome CDS784104 312 + 0.455128
NA y3587 hypothetical proteinchromosome CDS3978526 1500 + 0.49
NA y1803 sucrose specific transcriptional regulatorchromosome CDS1982931 1044 - 0.491379
NA y1389 transcriptional regulatorchromosome CDS1542521 1506 - 0.545153
NA y1111 hypothetical proteinchromosome CDS1250301 498 - 0.435743
NA y2950 DEOR-type transcriptional regulatorchromosome CDS3250293 816 - 0.482843
NA y0517 type III secretion system componentchromosome CDS588706 621 + 0.417069
NA y1094 transcriptional regulatorchromosome CDS1234482 420 + 0.464286
NA y1741 hypothetical proteinchromosome CDS1922705 642 - 0.376947
NA y2457 hypothetical proteinchromosome CDS2722939 396 + 0.44697
NA y3322 hypothetical proteinchromosome CDS3656247 666 + 0.462462
NA y3266 hypothetical proteinchromosome CDS3597721 399 - 0.45614
NA y0975 transcriptional regulatorchromosome CDS1100648 915 + 0.502732
NA y0180 transcriptional regulator LYSR-typechromosome CDS184581 912 + 0.47807
NA y2171 regulatorchromosome CDS2400117 933 - 0.530547
NA y0999 hypothetical proteinchromosome CDS1128812 450 + 0.48
NA y1788 NAGC-like transcriptional regulatorchromosome CDS1968945 789 + 0.504436
NA y0742 hypothetical proteinchromosome CDS826689 504 - 0.513889
NA y3249 hypothetical proteinchromosome CDS3582062 681 + 0.511013
NA y4049 hypothetical proteinchromosome CDS4490014 363 + 0.438017
NA y1503 transcriptional regulatorchromosome CDS1667069 879 - 0.514221
NA y1140 regulatorchromosome CDS1280540 303 + 0.481848
NA y0390 transcriptional regulatorchromosome CDS435754 687 - 0.491994
NA y2307 two-component transcriptional regulatorchromosome CDS2542389 693 + 0.520923
NA y2733 hypothetical proteinchromosome CDS3017713 723 - 0.430152
NA y1472 response regulatorchromosome CDS1631521 708 - 0.514124
NA y2377 LysR-type transcriptional regulatorchromosome CDS2624985 963 - 0.505711
NA y2191 phage antirepressorchromosome CDS2424950 1095 - 0.452055
NA y2419 transcriptional regulator of the GntR familychromosome CDS2688028 798 - 0.546366
NA y2570 regulatorchromosome CDS2831818 387 + 0.416021
NA y0512 response regulator/transcription activatorchromosome CDS581872 633 - 0.450237
NA y0011 hypothetical proteinchromosome CDS10766 690 - 0.44058
NA y2954 phage repressor protein cIchromosome CDS3254082 723 + 0.477178
NA y1333 hypothetical proteinchromosome CDS1479438 558 + 0.503584
NA y0141 hypothetical proteinchromosome CDS153441 264 - 0.44697
NA y3089 hypothetical proteinchromosome CDS3399434 321 - 0.461059
NA y0322 hypothetical proteinchromosome CDS350003 648 + 0.513889
NA y0332 transcriptional regulator HdfRchromosome CDS366872 882 - 0.475057
NA y3781 AraC-type regulatory proteinchromosome CDS4201370 876 - 0.400685
NA y1165 cold-shock proteinchromosome CDS1312428 492 - 0.361789
NA y2339 repressorchromosome CDS2575123 768 + 0.509115
NA Y1023 hypothetical proteinpMT-1 CDS16197 699 + 0.527897
NA y3708 hypothetical proteinchromosome CDS4122538 2448 + 0.35335
NA y1789 hypothetical proteinchromosome CDS1969711 168 + 0.517857
NA y2245 hypothetical proteinchromosome CDS2473696 1026 + 0.461014
NA y3766 hypothetical proteinchromosome CDS4188851 150 - 0.486667
NA y1731 hypothetical proteinchromosome CDS1914859 981 + 0.50051
NA y2009 transcriptional regulatorchromosome CDS2212310 957 + 0.53187
NA y1461 N-acetylmannosamine kinasechromosome CDS1619845 873 + 0.565865
NA y3913 hypothetical proteinchromosome CDS4368216 2376 - 0.541667
NA y1650 LACI-type transcriptional regulatorchromosome CDS1823261 993 + 0.470292
NA y3765 transcriptional regulator, sorC familychromosome CDS4188088 681 - 0.531571
NA y3567 repressorchromosome CDS3948021 987 - 0.47923
NA y0931 hypothetical proteinchromosome CDS1046393 846 + 0.521277
NA y0536 hypothetical proteinchromosome CDS602229 987 - 0.383992
NA y1711 lacI-family transcriptional regulatorchromosome CDS1891009 1041 - 0.464938
NA y2215 phage endopeptidase Rzchromosome CDS2447222 459 - 0.507625
NA y2933 regulatorchromosome CDS3236486 741 - 0.376518
NA Y1092 hypothetical proteinpMT-1 CDS70730 2010 + 0.61393
NA y2218 hypothetical proteinchromosome CDS2449556 564 - 0.429078
NA y0492 transcriptional regulatorchromosome CDS555489 510 - 0.44902
NA y0669 regulator for maltose metabolismchromosome CDS754397 276 - 0.496377
NA y2350 multi modular; transcriptional regulator; also ATP-binding component of a transport systemchromosome CDS2589041 1449 - 0.509317
NA y1959 hypothetical proteinchromosome CDS2158886 600 - 0.503333
NA y0250 AraC-like regulatorchromosome CDS265407 942 - 0.461783
NA y3442 hypothetical proteinchromosome CDS3829126 1047 + 0.452722
NA y1528 hypothetical proteinchromosome CDS1691686 603 + 0.351575
NA y2666 transcriptional regulator LYSR-typechromosome CDS2940431 870 + 0.53908
NA y2498 transcriptional regulatorchromosome CDS2760552 1002 + 0.500998
NA y3851 hypothetical proteinchromosome CDS4288430 1128 - 0.472518
NA y0216 transcriptional regulatorchromosome CDS231438 726 - 0.506887
NA y2152 hypothetical proteinchromosome CDS2379948 861 - 0.291521
NA y1690 transcriptional regulatorchromosome CDS1864011 1005 - 0.404975
NA y2919 ATP-dependent helicasechromosome CDS3224718 1758 + 0.525597
NA y0173 hypothetical proteinchromosome CDS178486 282 - 0.453901
NA y1328 hypothetical proteinchromosome CDS1474331 1392 - 0.467672
NA y2084 hypothetical proteinchromosome CDS2295546 894 + 0.432886
NA y0474 acetyltransferasechromosome CDS531243 585 - 0.437607
NA y2382 transcriptional regulator LYSR-typechromosome CDS2629576 897 - 0.508361
NA y2276 transcriptional regulatorchromosome CDS2512443 1155 - 0.550649
NA y1123 transcriptional regulator LYSR-typechromosome CDS1260736 894 + 0.495526
NA y0260 transcriptional repressorchromosome CDS277204 489 + 0.433538
NA y3547 transcriptional regulatorschromosome CDS3928806 933 - 0.554127
NA y0862 transcriptional regulatorchromosome CDS965773 810 - 0.427161
NA y0961 LysR-type transcriptional regulatory proteinchromosome CDS1085282 912 + 0.325658
NA y0549 hypothetical proteinchromosome CDS616262 489 - 0.476483
NA y1679 hypothetical proteinchromosome CDS1853231 498 - 0.522088
NA y0113 transcriptional regulator LYSR-typechromosome CDS123122 894 - 0.527964
NA y0598 hypothetical proteinchromosome CDS675124 591 - 0.497462
NA y3949 transcriptional regulatorchromosome CDS4406136 987 - 0.513678
acrR y1051 acrAB operon repressorchromosome CDS1186922 657 + 0.432268
agaR y3216 DEOR-type transcriptional regulator of aga operonchromosome CDS3541399 777 + 0.478764
araC y2100 transcriptional regulator for ara operonchromosome CDS2314185 933 + 0.484459
arcA y3721 negative response regulator of genes in aerobic pathways, sensors, ArcB and CpxAchromosome CDS4136312 717 + 0.481172
argR y0667 arginine repressorchromosome CDS752091 471 - 0.452229
arsR y0845 transcriptional repressor of chromosomal ars operonchromosome CDS945713 342 - 0.48538
asnC y0002 transcriptional regulatorchromosome CDS554 462 - 0.415584
baeR y1381 transcriptional response regulatory protein (sensor BaeS)chromosome CDS1529551 720 - 0.530556
basR y0677 transcriptional regulatorchromosome CDS760525 663 - 0.493213
caf1R Y1097 F1 capsule positive regulatorpMT-1 CDS77118 906 - 0.334437
celD y1254 negative transcriptional regulator of cel operonchromosome CDS1401240 843 + 0.409253
cobB y1790 NAD-dependent deacetylasechromosome CDS1969927 837 + 0.481481
cpxR y0067 two-component transcriptional regulatorchromosome CDS77048 723 + 0.497925
cpxR y1482 two-component transcriptional regulatorchromosome CDS1645753 684 + 0.475146
creB y3280 catabolic regulation response regulatorchromosome CDS3611702 702 - 0.497151
cspE y2774 cold shock proteinchromosome CDS3065525 234 - 0.440171
cspE y1166 cold shock protein Echromosome CDS1313141 255 + 0.411765
cspG y1230 homolog of Salmonella cold shock proteinchromosome CDS1379286 243 + 0.386831
cspI y0223 cold shock-like proteinchromosome CDS237428 309 + 0.436893
cspI y0224 cold shock-like proteinchromosome CDS237921 288 + 0.440972
cysB y2061 transcriptional regulator for cysteine regulonchromosome CDS2270296 975 + 0.465641
cytR y3436 transcription repressorchromosome CDS3823480 1020 - 0.453922
cytR y0297 regulator for deo operon, udp, cdd, tsx, nupC, and nupGchromosome CDS315809 1029 - 0.48105
dbpA y2531 ATP-dependent RNA helicasechromosome CDS2792757 1383 - 0.501085
deaD y0696 inducible ATP-independent RNA helicasechromosome CDS781467 2010 + 0.535323
deoR y2861 transcriptional repressor for deo operon, tsx, nupGchromosome CDS3158635 765 + 0.448366
dinG y2982 probably ATP-dependent helicasechromosome CDS3288628 2181 - 0.492435
emrR y0923 regulator of plasmid mcrB operon (microcin B17 synthesis)chromosome CDS1040620 537 - 0.456238
exuR y3602 negative regulator of exu regulon, exuT, uxaAC, and uxuBchromosome CDS3999960 879 + 0.444824
fadR y2177 fatty acid metabolism regulatorchromosome CDS2407095 720 - 0.4625
fimZ y2386 fimbrial Z protein; signal transducerchromosome CDS2634154 633 + 0.401264
fis y0214 DNA-binding protein Fischromosome CDS229846 297 + 0.464646
flgM y2513 anti-FliA factorchromosome CDS2773415 303 + 0.475248
fliA y2464 flagellar biosynthesis sigma factor FliAchromosome CDS2727988 723 - 0.529737
fruR y3637 transcriptional repressor of fru operon and otherschromosome CDS4032126 1011 - 0.531157
galR y2113 repressor of galETK operonchromosome CDS2330945 1017 - 0.493609
galR y3183 repressor of galETK operonchromosome CDS3504295 1092 + 0.515568
gcvA y3154 positive regulator of gcv operonchromosome CDS3465912 918 - 0.491285
glpR y3897 repressor of the glp operonchromosome CDS4351766 759 - 0.491436
gntR y3873 regulator of gluconate (gnt) operonchromosome CDS4315358 996 + 0.521084
greA y0679 transcription elongation factor GreAchromosome CDS762899 477 + 0.42348
greB y3915 transcription elongation factor GreBchromosome CDS4371125 516 + 0.492248
hepA y3656 ATP-dependent helicase HepAchromosome CDS4058750 2907 + 0.519436
hpaR y2548 regulatorchromosome CDS2810221 477 + 0.448637
iciA y3303 chromosome replication initiation inhibitor proteinchromosome CDS3635668 957 + 0.53187
iclR y0019 acetate operon repressorchromosome CDS24361 594 - 0.537037
ilvY y0344 positive regulator for ilvCchromosome CDS380665 885 - 0.527684
kdpE y1261 regulator of kdp operon (transcriptional effector)chromosome CDS1407563 630 - 0.504762
lacI y3234 transcriptional repressor of the lac operonchromosome CDS3562787 1149 - 0.482158
leuO y3642 leucine transcriptional activatorchromosome CDS4039341 969 - 0.427245
lexA y0572 LexA repressorchromosome CDS647648 609 + 0.505747
lrhA y1629 NADH dehydrogenase transcriptional regulator, LysR familychromosome CDS1800209 933 + 0.468382
lrp y2801 regulator proteinchromosome CDS3103442 495 - 0.442424
lysR y3185 positive regulator for lyschromosome CDS3506815 987 + 0.509625
malT y3900 transcriptional regulator MalTchromosome CDS4354117 2712 - 0.510693
metJ y0301 transcriptional repressor protein MetJchromosome CDS321175 318 - 0.493711
metR y0441 regulator for metE and metHchromosome CDS490311 954 - 0.530398
mfd y1784 transcription-repair coupling factorchromosome CDS1962082 3447 - 0.51233
mlc y2110 NAGC-like transcriptional regulatorchromosome CDS2326833 1218 + 0.46798
mtlR y4085 repressor for mtlchromosome CDS4532173 555 - 0.482883
nagC y1200 transcriptional repressor of nag (N-acetylglucosamine) operonchromosome CDS1346082 1266 - 0.49684
narP y1441 nitrate/nitrite response regulatorchromosome CDS1598894 663 - 0.447964
nhaR y3703 transcriptional activator of nhaAchromosome CDS4115647 900 - 0.457778
nusA y0687 transcription elongation factor NusAchromosome CDS770412 1506 + 0.491368
nusB y1002 transcription antitermination protein NusBchromosome CDS1131147 417 + 0.477218
nusG y0479 transcription antitermination protein NusGchromosome CDS536562 546 + 0.487179
ompR y3916 osmolarity response regulatorchromosome CDS4371776 720 + 0.522222
ompR y3871 transcriptional regulatory proteinchromosome CDS4313033 738 - 0.50813
oxyR y0320 activator, hydrogen peroxide-inducible geneschromosome CDS347497 918 + 0.488017
parB Y1077 partitioning proteinpMT-1 CDS63038 972 + 0.447531
pdhR y0766 transcriptional regulator of pyruvate dehydrogenase complexchromosome CDS854560 837 + 0.505376
phnF y0730 transcriptional regulatorchromosome CDS814018 726 - 0.567493
phoB y0978 positive response regulator for pho regulonchromosome CDS1107191 720 + 0.484722
phoP y1794 transcriptional regulatory proteinchromosome CDS1975226 672 - 0.479167
psaE y2884 regulatorchromosome CDS3185985 645 - 0.376744
pspA y1980 phage shock protein Achromosome CDS2182084 666 + 0.48048
pspC y1982 phage shock proteinchromosome CDS2183138 360 + 0.505556
pspF y1979 psp operon transcriptional activatorchromosome CDS2180811 1044 - 0.511494
purR y1950 transcriptional repressor for pur regulon, glyA, glnB, prsA, speAchromosome CDS2152199 1026 - 0.500975
rcsB y2970 positive response regulator for colanic capsule biosynthesischromosome CDS3270556 654 + 0.396024
recG y0105 DNA helicasechromosome CDS111774 2082 + 0.51633
relA y0811 (p)ppGpp synthetase I (GTP pyrophosphokinase)chromosome CDS907608 2235 + 0.509172
rfaH y0460 transcriptional activator RfaHchromosome CDS510380 489 - 0.441718
rhaR y0591 positive regulator for rhaRS operonchromosome CDS668152 873 + 0.490263
rhaS y0590 positive regulator for rhaBAD operonchromosome CDS667198 822 + 0.475669
rhlB y0359 ATP-dependent RNA helicasechromosome CDS400456 1287 - 0.486402
rho y0361 transcription termination factor Rhochromosome CDS402667 1260 + 0.45873
rnb y2077 exoribonuclease IIchromosome CDS2286866 1935 - 0.502842
rncS y1297 ribonuclease IIIchromosome CDS1441501 681 + 0.497797
rnk y0168 nucleoside diphosphate kinase regulatorchromosome CDS174176 411 + 0.501217
rob y3723 right origin-binding proteinchromosome CDS4137895 867 + 0.469435
rpoA y4015 DNA-directed RNA polymerase alpha subunitchromosome CDS4455019 990 + 0.508081
rpoB y0484 DNA-directed RNA polymerase beta subunitchromosome CDS540074 4029 + 0.493671
rpoC y0485 DNA-directed RNA polymerase beta' subunitchromosome CDS544195 4257 + 0.511863
rpoD y3537 RNA polymerase sigma factorchromosome CDS3921388 1899 + 0.487098
rpoE y1290 RNA polymerase sigma-70 factorchromosome CDS1434302 576 + 0.451389
rpoH y0419 RNA polymerase sigma factorchromosome CDS467801 858 + 0.503497
rpoN y0154 DNA-directed RNA polymerase subunit Nchromosome CDS162227 1434 + 0.488842
rpoS y0834 RNA polymerase sigma factorchromosome CDS933329 999 + 0.474474
rpoZ y0102 DNA-directed RNA polymerase omega subunitchromosome CDS108672 276 + 0.514493
rstA y2139 response transcriptional regulatory protein (RstB sensor)chromosome CDS2363830 801 + 0.475655
slmA y0095 nucleoid occlusion proteinchromosome CDS101600 597 + 0.479062
slyA y1961 transcriptional regulator SlyAchromosome CDS2161852 432 + 0.402778
spoT y0103 (p)ppGpp synthetase IIchromosome CDS108967 2109 + 0.489331
srmB y1287 ATP-dependent RNA helicasechromosome CDS1429871 1326 - 0.505279
treR y0165 trehalose repressorchromosome CDS169282 954 + 0.510482
trpR y3726 Trp operon repressorchromosome CDS4140038 402 - 0.5
tyrR y1988 transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transportchromosome CDS2187482 1668 + 0.483213
uhpA y4033 response regulatorchromosome CDS4469576 663 - 0.508296
uhpA y2588 response regulatorchromosome CDS2850881 630 + 0.487302
ureG y1242 urease accessory proteinchromosome CDS1390754 663 + 0.484163
uvrY y2443 response regulatorchromosome CDS2704374 657 - 0.455099
uxuR y2904 regulator for uxu operonchromosome CDS3208713 801 - 0.493134
vacB y0637 ribonuclease Rchromosome CDS720307 2535 + 0.523077
wecD y0368 hypothetical proteinchromosome CDS411486 795 + 0.51195
xylR y4053 regulator of xyl operonchromosome CDS4494979 1194 - 0.484087
ybtA y2398 AraC-type transcriptional regulator for yersiniabactin uptake and biosynthetic geneschromosome CDS2653492 960 + 0.563542
ypeR y1732 transcriptional activator proteinchromosome CDS1916326 738 + 0.333333
ytbR y3375 transcriptional activatorchromosome CDS3720096 744 - 0.385753
zntR y4017 zinc-responsive transcriptional regulatorchromosome CDS4456876 435 + 0.452874