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2024-05-18 12:02:08

Gene list

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COG category: Translation, ribosomal structure and biogenesis
Organism: Shigella flexneri 5 str. 8401, 8401

Number of genes found: 164

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Shigella flexneri 5 str. 8401, 8401
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA SFV_1022 hypothetical proteinchromosome CDS1068417 387 - 0.537468
NA SFV_2580 putative ATP synthase beta subunitchromosome CDS2643113 741 - 0.547908
NA SFV_0235 putative terminasechromosome CDS258523 333 + 0.501502
NA SFV_1420 hypothetical proteinchromosome CDS1467115 393 - 0.506361
alaS SFV_2808 alanyl-tRNA synthetasechromosome CDS2875187 2631 + 0.537058
ansB SFV_3015 periplasmic L-asparaginase IIchromosome CDS3079572 1047 - 0.524355
argS SFV_1914 arginine tRNA synthetasechromosome CDS1960671 1734 + 0.528835
asnS SFV_0932 asparagine tRNA synthetasechromosome CDS979746 1401 - 0.528194
cafA SFV_3273 bundles of cytoplasmic filamentschromosome CDS3346575 1470 - 0.521088
cca SFV_3096 tRNA nucleotidyl transferasechromosome CDS3162867 1239 + 0.56255
cysS SFV_0484 cysteine tRNA synthetasechromosome CDS510762 1314 + 0.553272
dbpA SFV_1815 ATP-dependent RNA helicasechromosome CDS1862318 1368 - 0.515351
deaD SFV_3192 inducible ATP-independent RNA helicasechromosome CDS3261835 1956 - 0.553681
def SFV_3306 peptide deformylasechromosome CDS3378398 510 + 0.462745
efp SFV_4305 elongation factor P (EF-P)chromosome CDS4448680 567 + 0.497355
fmt SFV_3307 methionyl-tRNA formyltransferasechromosome CDS3378922 948 + 0.525316
frr SFV_0155 ribosome releasing factorchromosome CDS183475 558 + 0.508961
ftsJ SFV_3209 cell division proteinchromosome CDS3282875 630 - 0.501587
fusA SFV_3345 GTP-binding protein chain elongation factor EF-Gchromosome CDS3402561 2115 - 0.508274
glnS SFV_0651 glutamine tRNA synthetasechromosome CDS688446 1665 - 0.524324
gltX SFV_2455 glutamate tRNA synthetase, catalytic subunitchromosome CDS2514377 1416 - 0.525424
glyQ SFV_3981 glycine tRNA synthetase, alpha subunitchromosome CDS4085101 912 + 0.558114
glyS SFV_3982 glycine tRNA synthetase, beta subunitchromosome CDS4086022 2070 + 0.557005
gshB SFV_3001 glutathione synthetasechromosome CDS3068749 951 + 0.535226
hemK SFV_1226 possible protoporphyrinogen oxidasechromosome CDS1275697 834 + 0.551559
hisS SFV_2561 histidine tRNA synthetasechromosome CDS2624496 1245 - 0.543775
ileS SFV_0020 isoleucine tRNA synthetasechromosome CDS21460 2769 + 0.556157
infA SFV_0875 protein chain initiation factor IF-1chromosome CDS911690 219 - 0.484018
infB SFV_3198 protein chain initiation factor IF-2chromosome CDS3269206 2649 - 0.534164
infC SFV_1505 protein chain initiation factor IF-3chromosome CDS1547062 435 + 0.473563
iucB SFV_3853 siderophore biosynthesis proteinchromosome CDS3953563 948 - 0.564346
ksgA SFV_0045 S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferasechromosome CDS50595 822 - 0.53528
leuS SFV_0684 leucine tRNA synthetasechromosome CDS720130 2676 + 0.532885
lysS SFV_2938 lysine tRNA synthetasechromosome CDS3006176 1518 - 0.528986
map SFV_0151 methionine aminopeptidasechromosome CDS179315 756 - 0.511905
miaA SFV_4329 delta(2)-isopentenylpyrophosphate tRNA-adenosine transferasechromosome CDS4471969 906 + 0.539735
pcnB SFV_0128 poly(A) polymerase Ichromosome CDS149182 1365 - 0.556777
pheS SFV_1509 phenylalanine tRNA synthetase, alpha-subunitchromosome CDS1548649 984 + 0.54065
pnp SFV_3194 Polyribonucleotide nucleotidyltransferasechromosome CDS3264897 2136 - 0.538858
prfA SFV_1225 peptide chain release factor RF-1chromosome CDS1274615 1083 + 0.530009
prfB SFV_2939 chromosome pseudo3007703 1099 - 0.532302
prfC SFV_4409 peptide chain release factor RF-3chromosome CDS4543357 1590 + 0.536478
prmA SFV_3284 methylase for 50S ribosomal subunit protein L11chromosome CDS3359301 882 + 0.544218
proS SFV_0178 proline tRNA synthetasechromosome CDS207615 1644 - 0.543187
pth SFV_1218 peptidyl-tRNA hydrolasechromosome CDS1267532 585 - 0.502564
queA SFV_0370 probably S-adenosylmethionine:tRNA ribosyltransferase-isomerasechromosome CDS388609 1071 + 0.538749
rbfA SFV_3197 ribosome-binding factor Achromosome CDS3268641 402 - 0.529851
rhlB SFV_3724 putative ATP-dependent RNA helicasechromosome CDS3808688 1266 + 0.522907
rhlE SFV_0780 putative ATP-dependent RNA helicasechromosome CDS809679 1221 + 0.554464
rimJ SFV_1088 acetylation of N-terminal alanine of 30S ribosomal subunit protein S5chromosome CDS1131392 585 + 0.495726
rimK SFV_0837 ribosomal protein S6 modification proteinchromosome CDS873377 903 + 0.555925
rimL SFV_1779 Ribosomal-protein-serine acetyltransferasechromosome CDS1819805 537 - 0.441341
rnd SFV_1425 RNase D, processes tRNA precursorchromosome CDS1472835 1128 + 0.539894
rne SFV_1106 RNase Echromosome CDS1146976 3186 - 0.558694
rnpA SFV_3808 ribonuclease Pchromosome CDS3902033 327 - 0.562691
rph SFV_3887 RNase PHchromosome CDS3991523 717 + 0.563459
rplA SFV_4056 50S ribosomal subunit protein L1chromosome CDS4169816 705 + 0.513475
rplB SFV_3336 50S ribosomal subunit protein L2chromosome CDS3396810 822 - 0.526764
rplC SFV_3339 50S ribosomal subunit protein L3chromosome CDS3398564 630 - 0.514286
rplD SFV_3338 50S ribosomal subunit protein L4chromosome CDS3397948 606 - 0.529703
rplE SFV_3328 50S ribosomal subunit protein L5chromosome CDS3393166 540 - 0.498148
rplF SFV_3325 50S ribosomal subunit protein L6chromosome CDS3391874 534 - 0.524345
rplI SFV_4358 50S ribosomal subunit protein L9chromosome CDS4497462 450 + 0.497778
rplJ SFV_4057 50S ribosomal subunit protein L10chromosome CDS4170933 498 + 0.522088
rplK SFV_4055 50S ribosomal subunit protein L11chromosome CDS4169384 429 + 0.519814
rplL SFV_4058 50S ribosomal subunit protein L7/L12chromosome CDS4171497 366 + 0.461749
rplM SFV_3258 50S ribosomal subunit protein L13chromosome CDS3328753 483 - 0.488613
rplN SFV_3330 50S ribosomal subunit protein L14chromosome CDS3394045 372 - 0.510753
rplO SFV_3321 50S ribosomal subunit protein L15chromosome CDS3390372 435 - 0.535632
rplP SFV_3333 50S ribosomal subunit protein L16chromosome CDS3395026 411 - 0.518248
rplQ SFV_3314 50S ribosomal subunit protein L17chromosome CDS3385883 384 - 0.536458
rplR SFV_3324 50S ribosomal subunit protein L18chromosome CDS3391511 354 - 0.536723
rplS SFV_2864 50S ribosomal subunit protein L19chromosome CDS2926067 348 + 0.482759
rplT SFV_1507 50S ribosomal subunit protein L20, and regulatorchromosome CDS1547843 357 + 0.481793
rplU SFV_3216 50S ribosomal subunit protein L21chromosome CDS3288980 312 - 0.483974
rplV SFV_3335 50S ribosomal subunit protein L22chromosome CDS3396168 333 - 0.495495
rplW SFV_3337 50S ribosomal subunit protein L23chromosome CDS3397649 303 - 0.481848
rplX SFV_3329 50S ribosomal subunit protein L24chromosome CDS3393720 315 - 0.463492
rplY SFV_2263 50S ribosomal subunit protein L25chromosome CDS2299342 357 + 0.484594
rpmA SFV_3215 50S ribosomal subunit protein L27chromosome CDS3288702 258 - 0.496124
rpmC SFV_3332 50S ribosomal subunit protein L29chromosome CDS3394835 192 - 0.541667
rpmD SFV_3322 50S ribosomal subunit protein L30chromosome CDS3390810 180 - 0.494444
rpmG SFV_3893 50S ribosomal subunit protein L33chromosome CDS3996656 168 + 0.39881
rpmH SFV_3809 50S ribosomal subunit protein L34chromosome CDS3902409 141 - 0.51773
rpmI SFV_1506 50S ribosomal subunit protein Achromosome CDS1547578 213 + 0.478873
rpmJ SFV_3319 50S ribosomal subunit protein L36chromosome CDS3388885 117 - 0.478632
rpsA SFV_0912 30S ribosomal subunit protein S1chromosome CDS952723 1674 + 0.510753
rpsB SFV_0152 30S ribosomal subunit protein S2chromosome CDS180279 924 + 0.504329
rpsC SFV_3334 30S ribosomal subunit protein S3chromosome CDS3395449 702 - 0.508547
rpsD SFV_3316 30S ribosomal subunit protein S4chromosome CDS3387322 621 - 0.505636
rpsE SFV_3323 30S ribosomal subunit protein S5chromosome CDS3390993 504 - 0.498016
rpsF SFV_4356 30S ribosomal subunit protein S6chromosome CDS4496472 396 + 0.527778
rpsG SFV_3346 30S ribosomal subunit protein S7, initiates assemblychromosome CDS3404703 540 - 0.501852
rpsH SFV_3326 30S ribosomal subunit protein S8, and regulatorchromosome CDS3392420 393 - 0.501272
rpsI SFV_3257 30S ribosomal subunit protein S9chromosome CDS3328345 393 - 0.524173
rpsJ SFV_3340 30S ribosomal subunit protein S10chromosome CDS3399226 312 - 0.554487
rpsK SFV_3317 30S ribosomal subunit protein S11chromosome CDS3387976 390 - 0.515385
rpsL SFV_3347 30S ribosomal subunit protein S12chromosome CDS3405339 375 - 0.533333
rpsM SFV_3318 30S ribosomal subunit protein S13chromosome CDS3388382 357 - 0.518207
rpsN SFV_3327 30S ribosomal subunit protein S14chromosome CDS3392846 306 - 0.526144
rpsO SFV_3195 30S ribosomal subunit protein S15chromosome CDS3267279 270 - 0.514815
rpsP SFV_2861 30S ribosomal subunit protein S16chromosome CDS2924352 309 + 0.511327
rpsQ SFV_3331 30S ribosomal subunit protein S17chromosome CDS3394581 255 - 0.47451
rpsR SFV_4357 30S ribosomal subunit protein S18chromosome CDS4497193 228 + 0.526316
rpsT SFV_0018 30S ribosomal subunit protein S20chromosome CDS19836 264 - 0.458333
rpsU SFV_3105 30S ribosomal subunit protein S21chromosome CDS3171671 216 + 0.518519
rsuA SFV_2261 16S pseudouridylate 516 synthasechromosome CDS2296684 792 - 0.522727
selB SFV_3943 selenocysteinyl-tRNA-specific translation factorchromosome CDS4045504 1845 + 0.562602
serS SFV_0884 serine tRNA synthetasechromosome CDS925005 1293 + 0.527456
sfhB SFV_2658 suppressor of ftsH mutationchromosome CDS2727371 981 + 0.529052
smpA SFV_2854 small membrane protein Achromosome CDS2916763 300 - 0.493333
spoU SFV_3878 putative RNA methylasechromosome CDS3982866 690 - 0.552174
srmB SFV_2639 ATP-dependent RNA helicasechromosome CDS2706591 1335 + 0.549064
sun SFV_3308 hypothetical proteinchromosome CDS3379894 1311 + 0.498093
tgt SFV_0371 tRNA-guanine transglycosylasechromosome CDS389734 1128 + 0.507979
thrS SFV_1504 threonine tRNA synthetasechromosome CDS1545022 1929 + 0.498186
trmA SFV_4038 tRNA (uracil-5-)-methyltransferasechromosome CDS4153366 1101 - 0.509537
trmD SFV_2863 tRNA methyltransferasechromosome CDS2925258 768 + 0.53125
trpS SFV_3389 tryptophan tRNA synthetasechromosome CDS3443764 1005 - 0.520398
truA SFV_2387 pseudouridylate synthase Ichromosome CDS2436833 813 - 0.555966
truB SFV_3196 tRNA pseudouridine 5S synthasechromosome CDS3267697 945 - 0.521693
tsf SFV_0153 protein chain elongation factor EF-Tschromosome CDS181460 852 + 0.496479
tufA SFV_3344 protein chain elongation factor EF-Tuchromosome CDS3401306 1185 - 0.535021
tufB SFV_4052 protein chain elongation factor EF-Tuchromosome CDS4166881 1185 + 0.532489
tyrS SFV_1654 tyrosine tRNA synthetasechromosome CDS1692154 1275 - 0.518431
valS SFV_4235 valine tRNA synthetasechromosome CDS4372316 2856 + 0.547619
yabO SFV_0050 hypothetical proteinchromosome CDS57282 660 - 0.542424
yadB SFV_0129 putative tRNA synthetasechromosome CDS150639 927 - 0.532902
yadP SFV_0133 hypothetical proteinchromosome CDS152954 744 - 0.557796
yaeJ SFV_0175 hypothetical proteinchromosome CDS205437 423 + 0.541371
ybjF SFV_0844 putative enzymechromosome CDS879929 1128 + 0.546986
yceC SFV_1107 hypothetical proteinchromosome CDS1150734 960 + 0.513542
ycfB SFV_1168 hypothetical proteinchromosome CDS1212708 1107 - 0.542909
ychF SFV_1217 putative GTP-binding proteinchromosome CDS1266324 1092 - 0.509158
yciH SFV_1295 hypothetical proteinchromosome CDS1350873 327 + 0.498471
yciL SFV_1281 hypothetical proteinchromosome CDS1335070 873 + 0.542955
yciO SFV_1280 hypothetical proteinchromosome CDS1334313 657 + 0.496195
yeiP SFV_2249 putative elongation factorchromosome CDS2282091 828 + 0.507246
yfcB SFV_2400 putative adenine-specific methylasechromosome CDS2449528 1266 - 0.512638
yfhC SFV_2607 putative deaminasechromosome CDS2677931 504 - 0.549603
yfiA SFV_2873 putative yhbH sigma 54 modulatorchromosome CDS2933102 342 - 0.461988
yfiF SFV_2644 hypothetical proteinchromosome CDS2711012 1038 - 0.564547
yfjA SFV_2862 hypothetical proteinchromosome CDS2924679 549 + 0.48816
ygcA SFV_2672 putative enzymechromosome CDS2745920 1302 + 0.514593
yhaR SFV_3154 hypothetical proteinchromosome CDS3226157 453 - 0.523179
yhbH SFV_3233 probable sigma-54 modulation proteinchromosome CDS3301999 288 + 0.444444
yhbY SFV_3210 hypothetical proteinchromosome CDS3283630 294 + 0.486395
yibK SFV_3925 hypothetical proteinchromosome CDS4025740 474 - 0.550633
yihZ SFV_3612 hypothetical proteinchromosome CDS3691346 438 - 0.552511
yjbC SFV_4100 hypothetical proteinchromosome CDS4226285 873 + 0.520046
yjeA SFV_4314 putative lysyl-tRNA synthetasechromosome CDS4455624 978 + 0.523517
yjeJ SFV_4301 hypothetical proteinchromosome CDS4445570 870 - 0.454023
yjfH SFV_4338 hypothetical proteinchromosome CDS4481947 732 + 0.560109
yjgF SFV_4249 hypothetical proteinchromosome CDS4384787 387 + 0.521964
yjgH SFV_4246 hypothetical proteinchromosome CDS4382407 480 + 0.458333
yjiI SFV_4195 hypothetical proteinchromosome CDS4333588 636 - 0.492138
yjjT SFV_4405 putative enzymechromosome CDS4540612 1032 - 0.546512
yleA SFV_0666 hypothetical proteinchromosome CDS701250 1425 + 0.539649
yliG SFV_0818 hypothetical proteinchromosome CDS856862 1326 - 0.527903
ymfC SFV_1170 hypothetical proteinchromosome CDS1214339 654 - 0.509174
ymjA SFV_1309 hypothetical proteinchromosome CDS1365625 246 - 0.48374
yqcB SFV_2666 hypothetical proteinchromosome CDS2737137 783 + 0.535121
yrdC SFV_3303 hypothetical proteinchromosome CDS3375516 618 - 0.519417
yrfH SFV_3405 hypothetical proteinchromosome CDS3460477 402 + 0.529851