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2024-05-18 14:03:07

Gene list

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COG category: Translation, ribosomal structure and biogenesis
Organism: Escherichia coli UTI89, UTI89

Number of genes found: 182

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Escherichia coli UTI89, UTI89
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA UTI89_C0313 50S ribosomal subunit protein Xchromosome CDS322966 144 - 0.430556
NA UTI89_C1262 probable ATPase YcfBchromosome CDS1237647 1152 - 0.536458
NA UTI89_C4099 glycine tRNA synthetase beta subunitchromosome CDS3988180 2070 - 0.556039
NA UTI89_C3048 hypothetical proteinchromosome CDS2971854 1113 + 0.530099
NA UTI89_C2192 hypothetical proteinchromosome CDS2103338 477 + 0.467505
NA UTI89_C4396 hypothetical proteinchromosome CDS4280678 258 - 0.395349
NA UTI89_C2898 ATP-dependent RNA helicasechromosome CDS2854638 1335 + 0.544569
NA UTI89_C1255 hypothetical proteinchromosome CDS1230553 252 - 0.412698
NA UTI89_C0659 hypothetical proteinchromosome CDS668315 1425 - 0.548772
NA UTI89_C1911 protein chain initiation factor IF-3chromosome CDS1835682 435 - 0.478161
NA UTI89_C2212 putative amidasechromosome CDS2126856 1488 - 0.563844
NA UTI89_C2931 putative YhbH sigma 54 modulatorchromosome CDS2881354 342 + 0.461988
NA UTI89_C5084 peptide chain release factor RF-3chromosome CDS4987089 102 + 0.421569
NA UTI89_C2004 hypothetical proteinchromosome CDS1920008 393 + 0.51145
NA UTI89_P089 hypothetical proteinpUTI89 CDS68562 564 + 0.579787
alaS UTI89_C3058 alanyl-tRNA synthetasechromosome CDS2977773 2631 - 0.538579
ansA UTI89_C1963 L-asparaginase Ichromosome CDS1883107 1017 + 0.500492
ansB UTI89_C3346 L-asparaginase II precursorchromosome CDS3277238 1047 - 0.51958
argS UTI89_C2080 arginine tRNA synthetasechromosome CDS1986696 1734 + 0.530565
asnS UTI89_C1002 asparagine tRNA synthetasechromosome CDS991917 1401 - 0.524625
aspS UTI89_C2070 aspartyl-tRNA synthetasechromosome CDS1975384 1773 - 0.538635
cca UTI89_C3492 tRNA nucleotidyl transferasechromosome CDS3429693 1239 + 0.566586
cysS UTI89_C0555 cysteinyl-tRNA synthetase (Cysteine--tRNA ligase)chromosome CDS565629 1386 + 0.54329
dbpA UTI89_C1614 ATP-independent RNA helicase DbpAchromosome CDS1526667 1374 + 0.521106
def UTI89_C3731 peptide deformylasechromosome CDS3651491 510 + 0.466667
efp UTI89_C4745 elongation factor P (EF-P)chromosome CDS4647498 567 + 0.497355
fmt UTI89_C3732 methionyl-tRNA formyltransferasechromosome CDS3652015 948 + 0.514768
ftsJ UTI89_C3611 cell division proteinchromosome CDS3546865 630 - 0.504762
fusA UTI89_C3842 translation elongation factor EF-G GTP-binding protein chainchromosome CDS3729406 2115 - 0.507801
glnS UTI89_C0684 glutaminyl-tRNA synthetasechromosome CDS689817 1665 + 0.527327
gltX UTI89_C2731 glutamyl-tRNA synthetasechromosome CDS2679177 1416 - 0.52613
glyQ UTI89_C4100 glycine tRNA synthetase, alpha subunitchromosome CDS3990259 912 - 0.560307
gshB UTI89_C3336 glutathione synthetasechromosome CDS3269530 951 + 0.526814
hemK UTI89_C1406 protein methyltransferase HemKchromosome CDS1341411 834 + 0.555156
hisS UTI89_C2835 histidine tRNA synthetasechromosome CDS2786813 1275 - 0.545882
hlsR UTI89_C3898 ribosome-associated heat shock protein 15chromosome CDS3782016 402 + 0.527363
ileS UTI89_C0028 isoleucyl-tRNA synthetasechromosome CDS23918 2817 + 0.544551
infA UTI89_C0899 protein chain initiation factor IF-1chromosome CDS896607 219 - 0.484018
infB UTI89_C3598 translation initiation factor IF2-alphachromosome CDS3533177 2673 - 0.530864
ksgA UTI89_C0058 dimethyladenosine transferasechromosome CDS54807 822 - 0.537713
lasT UTI89_C5176 hypothetical tRNA/rRNA methyltransferase LasTchromosome CDS5065010 708 + 0.481638
leuS UTI89_C0645 leucyl-tRNA synthetasechromosome CDS654052 2724 - 0.529001
ligT UTI89_C0161 putative 2'-5' RNA ligasechromosome CDS167547 540 - 0.562963
lysS UTI89_C3275 lysine tRNA synthetasechromosome CDS3212323 1518 - 0.525692
lysU UTI89_C4726 lysyl-tRNA synthetase, heat induciblechromosome CDS4625311 1545 - 0.474434
map UTI89_C0182 methionine aminopeptidasechromosome CDS193778 795 - 0.508176
miaA UTI89_C4771 delta(2)-isopentenylpyrophosphate tRNA-adenosine transferasechromosome CDS4671064 951 + 0.528917
pcnB UTI89_C0157 poly(A) polymerasechromosome CDS163775 1419 - 0.55814
pheS UTI89_C1907 phenylalanyl-tRNA synthetase alpha chainchromosome CDS1833545 996 - 0.544177
pheT UTI89_C1906 phenylalanyl-tRNA synthetase beta chainchromosome CDS1831143 2388 - 0.54397
pnp UTI89_C3594 polyribonucleotide nucleotidyltransferasechromosome CDS3528868 2223 - 0.530364
prfA UTI89_C1405 peptide chain release factor RF-1chromosome CDS1340329 1083 + 0.525392
prfC UTI89_C5144 peptide chain release factor RF-3chromosome CDS5033363 1587 + 0.542533
prfH UTI89_C0276 peptide chain release factor-like proteinchromosome CDS286486 615 + 0.541463
prmA UTI89_C3701 ribosomal protein L11 methyltransferasechromosome CDS3627026 882 + 0.545351
prmB UTI89_C2615 protein-(glutamine-N5) methyltransferasechromosome CDS2579921 1266 - 0.521327
proS UTI89_C0210 prolyl-tRNA synthetasechromosome CDS221811 1773 - 0.539763
pth UTI89_C1398 peptidyl-tRNA hydrolasechromosome CDS1333246 585 - 0.500855
queA UTI89_C0427 probable S-adenosylmethionine:tRNA ribosyltransferase-isomerasechromosome CDS439395 1071 + 0.53408
rbfA UTI89_C3597 ribosome-binding factor Achromosome CDS3532612 420 - 0.519048
rhlB UTI89_C4334 putative ATP-dependent RNA helicasechromosome CDS4224359 1266 - 0.521327
rhlE UTI89_C0798 putative ATP-dependent RNA helicase RhlEchromosome CDS793816 1362 + 0.563142
rimJ UTI89_C1191 ribosomal-protein-alanine acetyltransferasechromosome CDS1170530 585 + 0.494017
rimK UTI89_C0855 ribosomal protein S6 modification proteinchromosome CDS853162 903 + 0.55814
rimL UTI89_C1647 acetyl transferasechromosome CDS1572193 555 + 0.432432
rimM UTI89_C2941 16S rRNA processing protein RimMchromosome CDS2889570 558 - 0.489247
rluA UTI89_C0063 ribosomal large subunit pseudouridine synthase Achromosome CDS61527 660 - 0.543939
rluD UTI89_C2927 ribosomal large subunit pseudouridine synthase Dchromosome CDS2879232 981 - 0.528033
rluE UTI89_C1264 23S rRNA pseudouridine synthasechromosome CDS1239278 654 - 0.521407
rmf UTI89_C1018 ribosome modulation factorchromosome CDS1013035 168 + 0.541667
rnd UTI89_C1998 ribonuclease Dchromosome CDS1913553 1128 - 0.539894
rne UTI89_C1209 RNase Echromosome CDS1186146 3186 - 0.557125
rng UTI89_C3677 ribonuclease Gchromosome CDS3605711 1488 - 0.520161
rnpA UTI89_C4255 ribonuclease P protein componentchromosome CDS4146061 360 + 0.558333
rph UTI89_C4187 ribonuclease PHchromosome CDS4074362 741 - 0.558704
rplA UTI89_C3836 50S ribosomal subunit protein L1chromosome CDS3725696 705 - 0.514894
rplB UTI89_C3770 50S ribosomal subunit protein L2chromosome CDS3668353 822 - 0.526764
rplC UTI89_C3775 50S ribosomal subunit protein L3chromosome CDS3670107 630 - 0.514286
rplD UTI89_C3773 50S ribosomal subunit protein L4chromosome CDS3669491 606 - 0.531353
rplE UTI89_C3757 50S ribosomal subunit protein L5chromosome CDS3664709 540 - 0.498148
rplF UTI89_C3753 50S ribosomal subunit protein L6chromosome CDS3663417 534 - 0.520599
rplI UTI89_C4803 50S ribosomal subunit protein L9chromosome CDS4697831 450 + 0.497778
rplJ UTI89_C3835 50S ribosomal subunit protein L10chromosome CDS3724907 498 - 0.522088
rplK UTI89_C3838 50S ribosomal subunit protein L11chromosome CDS3726404 429 - 0.517483
rplL UTI89_C3834 50S ribosomal subunit protein L7/L12chromosome CDS3724475 366 - 0.461749
rplM UTI89_C3661 50S ribosomal subunit protein L13chromosome CDS3587889 504 - 0.488095
rplN UTI89_C3760 50S ribosomal subunit protein L14chromosome CDS3665588 372 - 0.510753
rplO UTI89_C3747 50S ribosomal subunit protein L15chromosome CDS3661915 435 - 0.535632
rplP UTI89_C3764 50S ribosomal subunit protein L16chromosome CDS3666569 411 - 0.515815
rplQ UTI89_C3739 50S ribosomal subunit protein L17chromosome CDS3657426 384 - 0.533854
rplR UTI89_C3751 50S ribosomal subunit protein L18chromosome CDS3663054 354 - 0.536723
rplS UTI89_C2939 50S ribosomal subunit protein L19chromosome CDS2888383 348 - 0.482759
rplT UTI89_C1909 50S ribosomal subunit protein L20chromosome CDS1834979 357 - 0.487395
rplU UTI89_C3620 50S ribosomal subunit protein L21chromosome CDS3552813 312 - 0.480769
rplV UTI89_C3767 50S ribosomal subunit protein L22chromosome CDS3667711 333 - 0.498498
rplW UTI89_C3771 50S ribosomal subunit protein L23chromosome CDS3669192 303 - 0.481848
rplX UTI89_C3758 50S ribosomal protein L24chromosome CDS3665263 315 - 0.457143
rplY UTI89_C2462 50S ribosomal protein L25chromosome CDS2422471 381 + 0.485564
rpmA UTI89_C3618 50S ribosomal subunit protein L27chromosome CDS3552535 258 - 0.496124
rpmB UTI89_C4181 50S ribosomal subunit protein L28chromosome CDS4069966 237 - 0.527426
rpmC UTI89_C3762 50S ribosomal subunit protein L29chromosome CDS3666378 192 - 0.541667
rpmD UTI89_C3748 50S ribosomal subunit protein L30chromosome CDS3662353 180 - 0.5
rpmF UTI89_C1214 50S ribosomal subunit protein L32chromosome CDS1192331 174 + 0.54023
rpmG UTI89_C4180 50S ribosomal subunit protein L33chromosome CDS4069778 168 - 0.404762
rpmH UTI89_C4254 50S ribosomal protein L34chromosome CDS4145904 141 + 0.51773
rpmI UTI89_C1910 50S ribosomal subunit protein Achromosome CDS1835388 198 - 0.5
rpmJ UTI89_C3745 50S ribosomal subunit protein L36chromosome CDS3660428 117 - 0.478632
rpsA UTI89_C0982 30S ribosomal subunit protein S1chromosome CDS966502 1674 + 0.512545
rpsB UTI89_C0183 30S ribosomal protein S2chromosome CDS194742 924 + 0.505411
rpsC UTI89_C3765 30S ribosomal subunit protein S3chromosome CDS3666992 702 - 0.509971
rpsD UTI89_C3741 30S ribosomal subunit protein S4chromosome CDS3658865 621 - 0.507246
rpsE UTI89_C3750 30S ribosomal subunit protein S5chromosome CDS3662536 504 - 0.498016
rpsF UTI89_C4800 30S ribosomal protein S6chromosome CDS4696841 396 + 0.527778
rpsG UTI89_C3843 30S ribosomal subunit protein S7chromosome CDS3731617 471 - 0.496815
rpsH UTI89_C3755 30S ribosomal subunit protein S8, and regulatorchromosome CDS3663963 393 - 0.501272
rpsI UTI89_C3660 30S ribosomal subunit protein S9chromosome CDS3587481 393 - 0.524173
rpsJ UTI89_C3776 30S ribosomal subunit protein S10chromosome CDS3670769 312 - 0.551282
rpsK UTI89_C3742 30S ribosomal subunit protein S11chromosome CDS3659519 390 - 0.515385
rpsL UTI89_C3844 30S ribosomal subunit protein S12chromosome CDS3732184 435 - 0.508046
rpsM UTI89_C3744 30S ribosomal subunit protein S13chromosome CDS3659925 357 - 0.518207
rpsN UTI89_C3756 30S ribosomal subunit protein S14chromosome CDS3664389 306 - 0.526144
rpsO UTI89_C3595 30S ribosomal subunit protein S15chromosome CDS3531250 270 - 0.518519
rpsP UTI89_C2942 30S ribosomal protein S16chromosome CDS2890137 309 - 0.511327
rpsQ UTI89_C3761 30S ribosomal subunit protein S17chromosome CDS3666124 255 - 0.47451
rpsR UTI89_C4802 30S ribosomal subunit protein S18chromosome CDS4697562 228 + 0.526316
rpsS UTI89_C3768 30S ribosomal subunit protein S19chromosome CDS3668058 279 - 0.491039
rpsT UTI89_C0025 30S ribosomal subunit protein S20chromosome CDS22342 264 - 0.462121
rpsU UTI89_C3502 30S ribosomal subunit protein S21chromosome CDS3438591 216 + 0.518519
rrf UTI89_C0187 ribosome recycling factorchromosome CDS197673 558 + 0.505376
rsuA UTI89_C2460 ribosomal small subunit pseudouridine synthase Achromosome CDS2419837 792 - 0.522727
selB UTI89_C4132 selenocysteine-specific elongation factorchromosome CDS4021936 1845 - 0.56748
serS UTI89_C0908 seryl-tRNA synthetasechromosome CDS909863 1293 + 0.528229
smpA UTI89_C2951 small protein A precursorchromosome CDS2897693 342 + 0.497076
speG UTI89_C1771 spermidine N(1)-acetyltransferasechromosome CDS1696687 561 + 0.467023
spoU UTI89_C4196 tRNA (Guanosine-2'-O-)-methyltransferasechromosome CDS4083047 690 + 0.556522
sun UTI89_C3733 SUN proteinchromosome CDS3653014 1290 + 0.496899
tgt UTI89_C0428 tRNA-guanine transglycosylasechromosome CDS440520 1128 + 0.513298
thrS UTI89_C1912 threonyl-tRNA synthetasechromosome CDS1836228 1929 - 0.493002
trmD UTI89_C2940 tRNA methyltransferase; tRNA (guanine-7-)-methyltransferasechromosome CDS2888772 768 - 0.53125
trpS UTI89_C3882 tryptophan tRNA synthetasechromosome CDS3765302 1005 - 0.524378
truA UTI89_C2603 tRNA pseudouridylate synthase Ichromosome CDS2567237 813 - 0.555966
truB UTI89_C3596 tRNA pseudouridine 5S synthasechromosome CDS3531668 945 - 0.526984
truC UTI89_C3161 hypothetical proteinchromosome CDS3077457 783 - 0.542784
tsf UTI89_C0185 protein chain elongation factor EF-Tschromosome CDS195800 852 + 0.496479
tufA UTI89_C3841 translation elongation factor EF-Tuchromosome CDS3728151 1230 - 0.531707
tufB UTI89_C3795 protein chain elongation factor EF-Tu (duplicate of tufB)chromosome CDS3687982 1185 - 0.535865
tyrS UTI89_C1828 tyrosyl-tRNA synthetasechromosome CDS1756109 1287 - 0.519037
valS UTI89_C4864 valyl-tRNA synthetasechromosome CDS4762588 2856 - 0.546219
yadB UTI89_C0158 conserved hypothetical protein YadBchromosome CDS165232 927 - 0.537217
yaeJ UTI89_C0207 hypothetical protein YaeJchromosome CDS219632 423 + 0.550827
ybjF UTI89_C0862 hypothetical RNA methyltransferase YbjFchromosome CDS859712 1128 + 0.54078
ycdK UTI89_C1073 hypothetical proteinchromosome CDS1058705 387 - 0.537468
yceC UTI89_C1211 hypothetical proteinchromosome CDS1189904 960 + 0.517708
ychF UTI89_C1397 probable GTP-binding protein YchFchromosome CDS1332038 1092 - 0.513736
yciH UTI89_C1553 putative translation initiation factorchromosome CDS1463588 327 + 0.507645
yciL UTI89_C1537 hypothetical protein YciLchromosome CDS1447799 876 + 0.534247
yciO UTI89_C1535 hypothetical proteinchromosome CDS1445007 657 + 0.496195
yebU UTI89_C2036 hypothetical protein YebUchromosome CDS1946907 1446 + 0.524896
yeiP UTI89_C2448 putative elongation factor YeiPchromosome CDS2405243 828 + 0.503623
yfhC UTI89_C2879 putative deaminasechromosome CDS2839101 537 - 0.528864
yfhQ UTI89_C2854 putative ATP synthase beta subunitchromosome CDS2809463 741 - 0.547908
yfiF UTI89_C2903 hypothetical tRNA/rRNA methyltransferase YfiFchromosome CDS2859057 1113 - 0.565139
ygcA UTI89_C3155 23S rRNA (uracil-5-)-methyltransferase RumAchromosome CDS3068156 1302 - 0.508449
ygjO UTI89_C3522 putative ribosomal RNA small subunit methyltransferase Dchromosome CDS3461345 1137 - 0.539138
yhaR UTI89_C3548 TdcF proteinchromosome CDS3485627 453 - 0.520971
yhbH UTI89_C3639 probable sigma-54 modulation proteinchromosome CDS3565851 288 + 0.451389
yhbY UTI89_C3613 hypothetical proteinchromosome CDS3547620 294 + 0.486395
yhdG UTI89_C3702 putative dehydrogenasechromosome CDS3628236 966 + 0.519669
yibK UTI89_C4147 hypothetical proteinchromosome CDS4042928 474 + 0.550633
yicN UTI89_C4219 hypothetical proteinchromosome CDS4107969 480 - 0.527083
yihZ UTI89_C4471 hypothetical proteinchromosome CDS4356452 438 + 0.547945
yjbC UTI89_C4590 putative 23S rRNA pseudouridine synthase subunit yjbCchromosome CDS4483032 873 + 0.505155
yjbN UTI89_C4617 hypothetical protein YjbNchromosome CDS4509078 996 + 0.536145
yjeA UTI89_C4755 putative lysyl-tRNA synthetasechromosome CDS4654442 978 + 0.525562
yjeJ UTI89_C4743 hypothetical protein YjeJchromosome CDS4645324 870 - 0.452874
yjfH UTI89_C4780 hypothetical tRNA/rRNA methyltransferase YjfHchromosome CDS4680999 732 + 0.554645
yjgF UTI89_C4848 hypothetical proteinchromosome CDS4750373 459 - 0.505447
yjjT UTI89_C5079 ribosomal RNA small subunit methyltransferase Cchromosome CDS4984371 1032 - 0.559109
ykgM UTI89_C0314 50S ribosomal protein L31 type B-1chromosome CDS323106 267 - 0.460674
yliG UTI89_C0838 hypothetical protein YliGchromosome CDS837924 1326 - 0.522624
yohI UTI89_C2413 hypothetical protein YohIchromosome CDS2370645 1017 - 0.52999
yrdC UTI89_C3727 protein YrdCchromosome CDS3648644 618 - 0.522654