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2024-05-18 07:19:36

Gene list

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COG category: Translation, ribosomal structure and biogenesis
Organism: Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150, ATCC 9150

Number of genes found: 189

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Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150, ATCC 9150
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA SPA2377 hypothetical proteinchromosome CDS2477948 501 - 0.387226
NA SPA3456 hypothetical proteinchromosome CDS3566755 228 - 0.535088
NA SPA2605 putative phage genechromosome CDS2702343 528 - 0.422348
NA SPA0333 hypothetical proteinchromosome CDS371828 669 - 0.445441
NA SPA0321 putative RNA methyltransferasechromosome CDS362348 732 + 0.572404
NA SPA3441 putative regulatory proteinchromosome CDS3550863 381 + 0.435696
NA SPA4327 tryptophanyl-tRNA synthetasechromosome CDS4501777 1014 - 0.526627
NA SPA0081 putative lipoproteinchromosome CDS93371 231 + 0.484848
NA SPA1315 hypothetical proteinchromosome CDS1400194 894 - 0.391499
NA SPA0733 hypothetical proteinchromosome CDS812061 885 - 0.493785
NA SPA0299 putative periplasmic proteinchromosome CDS334269 231 - 0.463203
alaS SPA2685 alanyl-tRNA synthetasechromosome CDS2786792 2631 - 0.54656
ansA SPA1550 cytoplasmic asparaginase Ichromosome CDS1626026 1017 + 0.52409
ansB SPA2969 L-asparaginasechromosome CDS3074840 1047 - 0.528176
argS SPA0960 arginyl-tRNA synthetasechromosome CDS1033456 1734 - 0.55248
asnS SPA1798 asparaginyl-tRNA synthetasechromosome CDS1859605 1401 + 0.552463
aspS SPA0968 aspartyl-tRNA synthetasechromosome CDS1040902 1773 + 0.565144
cca SPA3072 tRNA nucleotidyltransferasechromosome CDS3179680 1242 + 0.589372
cysS SPA2186 cysteinyl-tRNA synthetasechromosome CDS2272832 1386 - 0.549062
dbpA SPA1230 ATP-dependent RNA helicase, stimulated by 23S rRNAchromosome CDS1297118 1374 + 0.556041
deaD SPA3147 ATP-dependent RNA helicasechromosome CDS3254940 1890 - 0.579365
def SPA3273 peptide deformylasechromosome CDS3383323 510 + 0.517647
efp SPA4151 elongation factor Pchromosome CDS4329349 567 + 0.522046
fmt SPA3274 methionyl-tRNA formyltransferasechromosome CDS3383848 948 + 0.549578
frr SPA0226 ribosome releasing factorchromosome CDS261296 558 + 0.508961
ftsJ SPA3164 cell division proteinchromosome CDS3274195 627 - 0.513557
fusA SPA3312 elongation factor EF-2chromosome CDS3405945 2115 - 0.51773
glnS SPA2055 glutaminyl-tRNA synthetasechromosome CDS2141671 1668 - 0.540168
gltX SPA0446 glutamyl-tRNA synthetasechromosome CDS511700 1416 + 0.55226
glyQ SPA3507 glycyl-tRNA synthetase alpha subunitchromosome CDS3629800 912 - 0.558114
glyS SPA3506 glycyl-tRNA synthetase beta subunitchromosome CDS3627721 2070 - 0.568116
gshB SPA2958 glutathione synthetasechromosome CDS3066298 948 + 0.541139
hemK SPA1098 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferasechromosome CDS1168794 834 + 0.58753
hisS SPA0345 histidyl-tRNA synthetasechromosome CDS390346 1275 + 0.557647
hslR SPA3362 heat shock proteinchromosome CDS3458773 402 + 0.567164
ileS SPA0047 isoleucyl-tRNA synthetasechromosome CDS53821 2835 + 0.54709
infA SPA1845 translation initiation factor IF-1chromosome CDS1921970 219 + 0.484018
infB SPA3154 translation initiation factor IF-2chromosome CDS3262365 2679 - 0.553565
infC SPA1510 translation initiation factor IF-3chromosome CDS1584164 543 - 0.475138
ksgA SPA0091 dimethyladenosine transferasechromosome CDS102559 822 - 0.525547
lasT SPA4410 putative RNA methyltransferasechromosome CDS4584519 687 + 0.526929
leuS SPA2086 leucyl-tRNA synthetasechromosome CDS2170757 2583 + 0.557104
ligT SPA0194 2'-5' RNA ligasechromosome CDS221977 531 - 0.613936
lysS SPA2908 lysyl-tRNA synthetasechromosome CDS3016839 1518 - 0.542161
map SPA0221 methionine aminopeptidasechromosome CDS257200 795 - 0.522013
miaA SPA4177 tRNA delta(2)-isopentenylpyrophosphate transferasechromosome CDS4353418 906 + 0.547461
miaB SPA2070 MiaB protein (putative tRNA-thiotransferase (or tRNA-methylthiotransferase))chromosome CDS2154159 1467 + 0.539196
miaE SPA4271 tRNA hydroxylasechromosome CDS4443417 813 + 0.546125
pcnB SPA0190 poly(A) polymerasechromosome CDS218100 1419 - 0.561663
pheS SPA1506 phenylalanyl-tRNA synthetase alpha subunitchromosome CDS1582179 984 - 0.536585
pnp SPA3149 polynucleotide phosphorylasechromosome CDS3258002 2136 - 0.56133
prfA SPA1097 peptide chain release factor 1chromosome CDS1167712 1083 + 0.578947
prfB SPA2909 peptide chain release factor 2chromosome CDS3018366 1098 - 0.540073
prfC SPA4374 peptide chain release factor 3chromosome CDS4546457 1590 + 0.545912
prfH SPA2440 peptide chain release factor 2chromosome CDS2535650 615 - 0.554472
prmA SPA3250 ribosomal protein L11 methyltransferasechromosome CDS3360253 882 + 0.557823
proS SPA0249 prolyl-tRNA synthetasechromosome CDS286607 1719 - 0.542757
pth SPA1090 peptidyl-tRNA hydrolasechromosome CDS1160424 609 - 0.517241
queA SPA2319 S-adenosylmethionine:tRNA ribosyltransferase-isomerasechromosome CDS2412423 1065 - 0.559624
rbfA SPA3153 ribosome-binding factor Achromosome CDS3261743 402 - 0.534826
relE SPA4250 hypothetical proteinchromosome CDS4421657 285 + 0.470175
rfbF SPA0774 glucose-1-phosphate cytidylyltransferasechromosome CDS864521 774 + 0.437984
rhlE SPA1933 putative ATP-dependent RNA helicase rhlEchromosome CDS2013921 1362 - 0.5837
rimJ SPA1684 ribosomal-protein-alanine acetyltransferasechromosome CDS1745785 585 - 0.51453
rimK SPA1887 ribosomal protein S6 modification proteinchromosome CDS1963491 903 - 0.563677
rimL SPA1258 ribosomal-protein-serine acetyltransferasechromosome CDS1329384 540 + 0.501852
rluA SPA0096 ribosomal large subunit pseudouridine synthase Achromosome CDS109221 660 - 0.571212
rluB SPA1613 putative ribosomal large subunit pseudouridine synthase Bchromosome CDS1675280 666 + 0.528529
rluC SPA1664 ribosomal large subunit pseudouridine synthase Cchromosome CDS1725783 960 - 0.542708
rmf SPA1784 ribosome modulation factor (protein E)chromosome CDS1840515 168 - 0.535714
rnG SPA3237 ribonuclease Gchromosome CDS3346371 1470 - 0.527891
rna SPA2117 ribonuclease I precursorchromosome CDS2201697 807 + 0.551425
rnd SPA1056 ribonuclease Dchromosome CDS1126999 1116 + 0.556452
rne SPA1666 ribonuclease Echromosome CDS1727316 3204 + 0.581149
rnpA SPA3684 ribonuclease Pchromosome CDS3827793 360 + 0.558333
rph SPA3586 ribonuclease PHchromosome CDS3715338 717 - 0.546722
rplA SPA3988 50S ribosomal protein L1chromosome CDS4137166 705 + 0.534752
rplB SPA3303 50S ribosomal protein L2chromosome CDS3400190 822 - 0.532847
rplC SPA3306 50S ribosomal protein L3chromosome CDS3401944 630 - 0.512698
rplD SPA3305 50S ribosomal protein L4chromosome CDS3401328 606 - 0.533003
rplE SPA3294 50S ribosomal protein L5chromosome CDS3396547 540 - 0.494444
rplF SPA3291 50S ribosomal protein L6chromosome CDS3395255 534 - 0.516854
rplI SPA4211 50S ribosomal protein L9chromosome CDS4380534 450 + 0.506667
rplJ SPA3989 50S ribosomal protein L10chromosome CDS4138286 498 + 0.52008
rplK SPA3987 50S ribosomal protein L11chromosome CDS4136734 429 + 0.524476
rplL SPA3990 50S ribosomal protein L7/L12chromosome CDS4138850 366 + 0.461749
rplM SPA3212 50S ribosomal protein L13chromosome CDS3319374 429 - 0.512821
rplN SPA3296 50S ribosomal protein L14chromosome CDS3397426 372 - 0.5
rplO SPA3287 50S ribosomal protein L15chromosome CDS3393753 435 - 0.544828
rplP SPA3299 50S ribosomal protein L16chromosome CDS3398406 411 - 0.523114
rplQ SPA3280 50S ribosomal protein L17chromosome CDS3389264 384 - 0.544271
rplR SPA3290 50S ribosomal protein L18chromosome CDS3394892 354 - 0.528249
rplS SPA2532 50S ribosomal protein L19chromosome CDS2632718 348 - 0.482759
rplT SPA1507 50S ribosomal protein L20chromosome CDS1583464 357 - 0.498599
rplU SPA3171 50S ribosomal protein L21chromosome CDS3280245 312 - 0.487179
rplV SPA3301 50S ribosomal protein L22chromosome CDS3399548 333 - 0.501502
rplW SPA3304 50S ribosomal protein L23chromosome CDS3401029 303 - 0.491749
rplX SPA3295 50S ribosomal protein L24chromosome CDS3397101 315 - 0.457143
rplY SPA0626 50S ribosomal protein L25chromosome CDS704403 285 - 0.512281
rpmA SPA3170 50S ribosomal protein L27chromosome CDS3279968 258 - 0.492248
rpmB SPA3580 50S ribosomal protein L28chromosome CDS3710885 237 - 0.518987
rpmC SPA3298 50S ribosomal protein L29chromosome CDS3398215 192 - 0.53125
rpmD SPA3288 50S ribosomal protein L30chromosome CDS3394191 180 - 0.511111
rpmE SPA3939 50S ribosomal protein L31chromosome CDS4083808 213 + 0.488263
rpmE2 SPA2253 50S ribosomal protein L31chromosome CDS2346846 261 - 0.440613
rpmF SPA1660 50S ribosomal protein L32chromosome CDS1724172 174 - 0.528736
rpmG SPA3579 50S ribosomal protein L33chromosome CDS3710697 168 - 0.404762
rpmH SPA3683 50S ribosomal protein L34chromosome CDS3827636 141 + 0.524823
rpmI SPA1508 50S ribosomal protein L35chromosome CDS1583871 198 - 0.484848
rpmJ SPA3285 50S ribosomal protein L36chromosome CDS3392266 117 - 0.478632
rpmJ2 SPA2252 50S ribosomal protein L36chromosome CDS2346700 141 - 0.432624
rpsA SPA1817 30S ribosomal protein S1chromosome CDS1885026 1674 - 0.510753
rpsB SPA0223 30S ribosomal protein S2chromosome CDS258445 726 + 0.511019
rpsC SPA3300 30S ribosomal protein S3chromosome CDS3398829 702 - 0.511396
rpsD SPA3282 30S ribosomal protein S4chromosome CDS3390703 621 - 0.512077
rpsE SPA3289 30S ribosomal protein S5chromosome CDS3394374 504 - 0.505952
rpsF SPA4208 30S ribosomal protein S6chromosome CDS4379544 396 + 0.532828
rpsG SPA3313 30S ribosomal protein S7chromosome CDS3408156 471 - 0.498938
rpsH SPA3292 30S ribosomal protein S8chromosome CDS3395801 393 - 0.503817
rpsI SPA3211 30S ribosomal protein S9chromosome CDS3318966 393 - 0.529262
rpsJ SPA3307 30S ribosomal protein S10chromosome CDS3402606 312 - 0.548077
rpsK SPA3283 30S ribosomal protein S11chromosome CDS3391357 390 - 0.515385
rpsL SPA3314 30S ribosomal protein S12chromosome CDS3408722 375 - 0.528
rpsM SPA3284 30S ribosomal protein S13chromosome CDS3391763 357 - 0.526611
rpsN SPA3293 30S ribosomal protein S14chromosome CDS3396227 306 - 0.526144
rpsO SPA3151 30S ribosomal protein S15chromosome CDS3260379 270 - 0.5
rpsP SPA2535 30S ribosomal protein S16chromosome CDS2634485 249 - 0.522088
rpsQ SPA3297 30S ribosomal protein S17chromosome CDS3397961 255 - 0.478431
rpsR SPA4210 30S ribosomal protein S18chromosome CDS4380265 228 + 0.52193
rpsS SPA3302 30S ribosomal protein S19chromosome CDS3399895 279 - 0.491039
rpsT SPA0044 30S ribosomal protein S20chromosome CDS52246 264 - 0.465909
rpsU SPA3077 30S ribosomal protein S21chromosome CDS3184513 216 + 0.518519
rsmC SPA4370 16S ribosomal RNA m2G1207 methyltransferasechromosome CDS4543707 1029 - 0.569485
rumA SPA2822 23S rRNA (uracil-5-)-methyltransferasechromosome CDS2924168 1296 - 0.544753
selB SPA3533 selenocysteine-specific elongation factorchromosome CDS3658853 1851 - 0.570502
serS SPA1835 seryl-tRNA synthetasechromosome CDS1907405 1293 - 0.54215
sfhB SPA2523 ftsH suppressor protein SfhBchromosome CDS2623392 981 - 0.533129
smpA SPA2544 small protein Achromosome CDS2642914 297 + 0.50505
speG SPA1353 spermidine N1-acetyltransferasechromosome CDS1433544 561 + 0.483066
srmB SPA0275 ATP-dependent RNA helicase SrmBchromosome CDS310922 1335 - 0.54382
stbD SPA2382 putative fimbrial proteinchromosome CDS2483728 1326 + 0.522624
sun SPA3275 sun proteinchromosome CDS3384847 1290 + 0.541085
tgt SPA2318 queuine tRNA-ribosyltransferasechromosome CDS2411099 1128 - 0.524823
thrS SPA1511 threonyl-tRNA synthetasechromosome CDS1584710 1929 - 0.50337
trmA SPA3967 tRNA (uracil-5-)-methyltransferasechromosome CDS4120386 1101 - 0.520436
trmD SPA2533 tRNA (guanine-N(1)-)-methyltransferasechromosome CDS2633106 768 - 0.541667
trmH SPA3595 tRNA (guanosine-2'-O)-methyltransferasechromosome CDS3724845 690 + 0.53913
trmU SPA1616 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferasechromosome CDS1676798 1107 + 0.544715
trpS SPA3346 tryptophanyl-tRNA synthetasechromosome CDS3441961 1005 - 0.515423
truA SPA0496 tRNA pseudouridine synthase Achromosome CDS566635 813 + 0.557196
truB SPA3152 tRNA pseudouridine synthase Bchromosome CDS3260799 945 - 0.559788
tsf SPA0224 elongation factor Tschromosome CDS259428 852 + 0.523474
tuf SPA3311 elongation factor Tuchromosome CDS3404689 1185 - 0.540928
tuf SPA3984 elongation factor Tuchromosome CDS4134232 1185 + 0.538397
tyrS SPA1404 tyrosyl-tRNA synthetasechromosome CDS1487536 1275 - 0.527843
valS SPA4276 valyl-tRNA synthetasechromosome CDS4447086 2856 - 0.567227
yadB SPA0191 glutamyl-tRNA synthetasechromosome CDS219659 897 - 0.578595
yaeJ SPA0247 hypothetical proteinchromosome CDS285378 423 + 0.555556
ybfE SPA2046 hypothetical proteinchromosome CDS2132442 294 + 0.527211
ybjF SPA1880 23S rRNA (uracil-5-)-methyltransferasechromosome CDS1956714 1128 - 0.564716
ychF SPA1089 putative ATP/GTP-binding proteinchromosome CDS1159216 1092 - 0.53022
yciH SPA1170 hypothetical proteinchromosome CDS1241754 327 + 0.461774
yciL SPA1157 putative pseudouridine synthasechromosome CDS1225663 876 + 0.565068
yciO SPA1156 hypothetical proteinchromosome CDS1224942 621 + 0.52818
yeiP SPA0640 elongation factor Pchromosome CDS719823 804 - 0.513682
yejD SPA0628 ribosomal small subunit pseudouridine synthasechromosome CDS706724 696 + 0.54454
yfbG SPA0564 hypothetical proteinchromosome CDS637216 1983 - 0.542108
yfcB SPA0479 hypothetical proteinchromosome CDS551319 933 + 0.529475
yfhC SPA0297 hypothetical proteinchromosome CDS332122 552 + 0.570652
yfiA SPA2525 putative sigma(54) modulation proteinchromosome CDS2625513 339 + 0.471976
yfiF SPA0270 putative RNA methyltransferasechromosome CDS306709 1038 + 0.572254
yfjA SPA2534 16S rRNA-processing proteinchromosome CDS2633918 549 - 0.497268
ygjO SPA3088 hypothetical proteinchromosome CDS3198812 1137 - 0.534741
yhbH SPA3188 probable sigma(54) modulation proteinchromosome CDS3293333 288 + 0.458333
yhbY SPA3165 hypothetical proteinchromosome CDS3274909 333 + 0.471471
yhdG SPA3251 hypothetical proteinchromosome CDS3361914 846 + 0.536643
yhjN SPA3474 putative polysaccharide biosynthesis protein subunit Bchromosome CDS3591952 2301 - 0.569752
yibK SPA3547 putative RNA-methyltransferasechromosome CDS3677537 474 + 0.563291
yihZ SPA3869 D-tyrosyl-tRNA deacylasechromosome CDS4016262 438 + 0.561644
yjbC SPA4031 putative pseudouridine synthasechromosome CDS4187562 870 + 0.502299
yjbN SPA4060 hypothetical proteinchromosome CDS4218732 999 + 0.552553
yjeA SPA4161 lysyl-tRNA synthetasechromosome CDS4335834 978 + 0.537832
yjfH SPA4186 probable tRNA/rRNA methyltransferasechromosome CDS4363423 732 + 0.569672
yjgF SPA4259 hypothetical proteinchromosome CDS4433107 387 - 0.54522
yliG SPA1903 hypothetical proteinchromosome CDS1978195 1326 + 0.539216
yoaB SPA1051 hypothetical proteinchromosome CDS1121232 345 - 0.510145
yohI SPA0677 hypothetical proteinchromosome CDS759599 939 + 0.571885
yqcB SPA2828 putative RNA pseudouridylate synthasechromosome CDS2933181 783 - 0.58493
yrdC SPA3269 hypothetical proteinchromosome CDS3380476 573 - 0.539267