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2024-05-18 14:43:44

Gene list

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COG category: Coenzyme transport and metabolism
Organism: Shigella flexneri 2a str. 301, 301

Number of genes found: 146

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Shigella flexneri 2a str. 301, 301
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA SF2918 hypothetical proteinchromosome CDS3011204 714 - 0.544818
NA SF3024 putative class II aminotransferasechromosome CDS3121596 351 + 0.507123
NA SF3025 putative class II aminotransferasechromosome CDS3121979 789 + 0.52725
NA SF1695 hypothetical proteinchromosome CDS1727683 306 + 0.447712
NA SF2440 hypothetical proteinchromosome CDS2493319 1695 - 0.464897
NA SF1192 putative ferric enterobactin transport ATP-binding proteinchromosome CDS1236027 759 - 0.540184
apbA SF0362 2-dehydropantoate 2-reductasechromosome CDS372977 912 - 0.513158
bioA SF0725 adenosylmethionine--8-amino-7-oxononanoate transaminasechromosome CDS750795 1401 - 0.549607
bioB SF0724 biotin synthesis, sulfur insertion?chromosome CDS752171 1041 + 0.554275
bioD SF0728 dithiobiotin synthetasechromosome CDS755097 678 + 0.538348
bioD SF1614 dithiobiotin synthetasechromosome CDS1641153 696 - 0.520115
bioF SF0726 8-amino-7-oxononanoate synthasechromosome CDS753208 1155 + 0.586147
birA SF4051 biotin--protein ligasechromosome CDS4192835 966 + 0.494824
btuB SF4048 outer membrane receptor for transport of vitamin B12, E colicins, and bacteriophage BF23chromosome CDS4183651 1845 + 0.500271
btuC SF1520 vtamin B12-transporter permeasechromosome CDS1551855 981 + 0.552497
btuD SF1522 vitamin B12-transporter ATPasechromosome CDS1553449 750 + 0.550667
btuR SF1272 cob(I)yrinic acid a,c-diamide adenosyltransferasechromosome CDS1322051 591 - 0.510998
coaA SF4052 pantothenate kinasechromosome CDS4193829 927 - 0.445523
coaE SF0100 dephospho-CoA kinasechromosome CDS111101 621 - 0.523349
cobS SF2060 cobalamin synthasechromosome CDS2081820 744 - 0.533602
cobT SF2059 nicotinate-nucleotide--dimethylbenzimidazolephosphoribosyltransferasechromosome CDS2080729 1080 - 0.512037
cobU SF2061 adenosylcobinamide kinasechromosome CDS2082560 510 - 0.492157
cysD SF2775 sulfate adenylyltransferase subunit 2chromosome CDS2847558 909 - 0.537954
cysG SF3387 uroporphyrinogen III methylasechromosome CDS3467047 1374 + 0.542213
cysH SF2778 phosphoadenosine phosphosulfate reductasechromosome CDS2851602 735 - 0.514286
dfp SF3678 phosphopantothenoylcysteine synthase/decarboxylasechromosome CDS3782973 1293 + 0.525909
dinD SF3684 DNA-damage-inducible proteinchromosome CDS3788075 825 + 0.45697
dxs SF0357 1-deoxy-D-xylulose-5-phosphate synthasechromosome CDS367687 1863 - 0.539452
fepC SF0502 ATP-binding component of ferric enterobactin transportchromosome CDS522848 816 - 0.53799
fhuC SF0143 ATP-binding component of hydroxymate-dependent iron transportchromosome CDS161556 798 + 0.561404
folA SF0045 dihydrofolate reductase type Ichromosome CDS49141 480 + 0.529167
folC SF2391 dihydrofolate:folylpolyglutamate synthetase; dihydrofolate synthetasechromosome CDS2439786 1269 - 0.559496
folD SF0460 5,10-methylene-tetrahydrofolate dehydrogenase; 5,10-methylene-tetrahydrofolate cyclohydrolasechromosome CDS475386 867 - 0.545559
folE SF2238 GTP cyclohydrolase Ichromosome CDS2265463 669 - 0.509716
folK SF0134 7, 8-dihydro-6-hydroxymethylpterin-pyrophosphokinasechromosome CDS149031 480 - 0.520833
folP SF3217 7,8-dihydropteroate synthasechromosome CDS3316246 894 - 0.510067
folX SF2379 D-erythro-7,8-dihydroneopterin triphosphate epimerasechromosome CDS2429438 363 + 0.449036
gshA SF2715 glutamate--cysteine ligasechromosome CDS2788781 1341 - 0.51305
gshB SF2938 glutathione synthetasechromosome CDS3030181 951 + 0.535226
hemA SF1213 glutamyl-tRNA reductasechromosome CDS1260595 1257 + 0.538584
hemB SF0249 delta-aminolevulinic acid dehydratasechromosome CDS268341 1008 + 0.537698
hemC SF3877 porphobilinogen deaminasechromosome CDS3998192 942 - 0.559448
hemD SF3876 uroporphyrinogen-III synthetasechromosome CDS3997455 741 - 0.530364
hemE SF4069 uroporphyrinogen decarboxylasechromosome CDS4216551 1065 + 0.561502
hemF SF2489 coproporphyrinogen III oxidasechromosome CDS2549161 900 + 0.551111
hemG SF3926 protoporphyrin oxidasechromosome CDS4047559 546 + 0.514652
hemH SF0420 ferrochelatasechromosome CDS434476 963 + 0.543095
hemL SF0146 glutamate-1-semialdehyde aminotransferasechromosome CDS165257 1281 - 0.557377
hemN SF3937 coproporphyrinogen III oxidasechromosome CDS4064734 1374 + 0.528384
hemX SF3875 uroporphyrinogen III methylasechromosome CDS3996216 1218 - 0.536125
hemY SF3874 HemY proteinchromosome CDS3995017 1197 - 0.543024
ilvB SF3790 acetolactate synthase large subunitchromosome CDS3898737 1599 + 0.564728
ilvC SF3848 ketol-acid reductoisomerasechromosome CDS3967355 1476 + 0.53523
ilvE SF3845 branched-chain amino acid aminotransferasechromosome CDS3961927 930 + 0.544086
ilvG SF3843 acetolactate synthase II large subunitchromosome CDS3960001 1647 + 0.545841
ilvI SF0072 acetolactate synthase III large subunitchromosome CDS83387 1809 + 0.524599
ispA SF0358 geranyltranstransferase (farnesyldiphosphate synthase)chromosome CDS369574 900 - 0.543333
ispB SF3227 octaprenyl diphosphate synthasechromosome CDS3325892 972 + 0.526749
kbl SF3657 2-amino-3-ketobutyrate coenzyme A ligasechromosome CDS3763827 1197 - 0.54386
kdtB SF3673 phosphopantetheine adenylyltransferasechromosome CDS3780139 480 + 0.527083
ldhA SF1814 D-lactate dehydrogenasechromosome CDS1851238 990 - 0.50202
lipA SF0653 lipoyl synthasechromosome CDS690305 966 + 0.534162
lipB SF0651 lipoyltransferasechromosome CDS688309 576 + 0.472222
menA SF4008 1,4-dihydroxy-2-naphthoate octaprenyltransferase,chromosome CDS4134501 927 - 0.533981
menB SF2341 naphthoate synthasechromosome CDS2388692 858 - 0.551282
menC SF2340 O-succinylbenzoate synthasechromosome CDS2387730 963 - 0.5919
menD SF2343 2-oxoglutarate decarboxylasechromosome CDS2390319 1671 - 0.579294
menF SF2344 menaquinone-specific isochorismate synthasechromosome CDS2392078 1071 - 0.538749
menG SF4007 ribonuclease activity regulator protein RraAchromosome CDS4133923 486 - 0.522634
metK SF2933 S-adenosylmethionine synthetasechromosome CDS3024996 1155 + 0.532468
moaA SF0731 molybdenum cofactor biosynthesis protein Achromosome CDS759871 990 + 0.540404
moaB SF0732 molybdopterin biosynthesis protein Bchromosome CDS760882 513 + 0.524366
moaC SF0733 molybdenum cofactor biosynthesis protein Cchromosome CDS761397 486 + 0.561728
moaD SF0734 molybdopterin biosynthesis protein Dchromosome CDS761875 246 + 0.569106
moaE SF0735 molybdopterin converting factor, subunit 2chromosome CDS762122 453 + 0.578366
mobA SF3928 molybdopterin-guanine dinucleotide biosynthesis protein Achromosome CDS4054103 585 - 0.509402
mobB SF3927 molybdopterin-guanine dinucleotide biosynthesis protein Bchromosome CDS4053594 528 - 0.484848
modD SF1190 molybdenum transport proteinchromosome CDS1234354 855 - 0.523977
moeA SF0777 molybdopterin biosynthesis MoeA proteinchromosome CDS809292 1236 - 0.563107
moeB SF0776 molybdopterin biosynthesis protein MoeBchromosome CDS808543 750 - 0.558667
mogA SF0010 molybdenum cofactor biosynthesis proteinchromosome CDS9305 588 + 0.540816
nadA SF0554 quinolinate synthetasechromosome CDS575045 1044 - 0.501916
nadC SF0106 nicotinate-nucleotide pyrophosphorylasechromosome CDS116016 894 - 0.533557
nadD SF0642 nicotinic acid mononucleotide adenyltransferasechromosome CDS679948 642 + 0.498442
nadE SF1486 NAD(+) synthetasechromosome CDS1522166 828 - 0.487923
nadR SF4422 nicotinamide-nucleotide adenylyltransferasechromosome CDS4592900 1254 + 0.512759
ospB CP0003 OspB, protein secreted by the Mxi-Spa secretion machinery, function unknownpCP301 CDS1176 867 + 0.32872
pabA SF3379 para-aminobenzoate synthase component IIchromosome CDS3459476 564 - 0.537234
pabB SF1416 para-aminobenzoate synthase component Ichromosome CDS1454127 1362 - 0.507342
pabC SF1100 4-amino-4-deoxychorismate lyasechromosome CDS1141015 810 + 0.506173
padI SF2762 phenylacrylic acid decarboxylase-like proteinchromosome CDS2837429 594 - 0.570707
panB SF0131 3-methyl-2-oxobutanoate hydroxymethyltransferasechromosome CDS146898 795 - 0.538365
panC SF0130 pantoate--beta-alanine ligasechromosome CDS146035 852 - 0.5223
panD SF0128 aspartate 1-decarboxylase precursorchromosome CDS144405 381 - 0.527559
panF SF3296 sodium/panthothenate symporterchromosome CDS3395179 1452 + 0.541322
pdxA SF0049 4-hydroxythreonine-4-phosphate dehydrogenasechromosome CDS51745 990 - 0.562626
pdxB SF2396 erythronate-4-phosphate dehydrogenasechromosome CDS2444827 1137 - 0.53562
pdxH SF1663 pyridoxamine 5'-phosphate oxidasechromosome CDS1694117 657 - 0.515982
pdxJ SF2626 pyridoxal phosphate biosynthetic proteinchromosome CDS2698213 732 - 0.553279
pdxK SF2473 pyridoxine kinasechromosome CDS2533686 852 - 0.516432
pdxY SF1661 pyridoxine kinasechromosome CDS1691744 864 - 0.52662
pncB SF0928 nicotinate phosphoribosyltransferasechromosome CDS974376 1203 - 0.512053
pnuC SF0553 PnuC proteinchromosome CDS574288 720 - 0.483333
poxB SF0826 pyruvate dehydrogenasechromosome CDS858567 1719 - 0.536358
ribA SF1281 GTP cyclohydrolase II proteinchromosome CDS1332854 591 - 0.499154
ribB SF3081 3,4-dihydroxy-2-butanone 4-phosphate synthasechromosome CDS3176948 654 - 0.527523
ribD SF0351 bifunctional pyrimidine deaminase/reductasechromosome CDS362952 1104 + 0.557065
ribE SF1690 riboflavin synthase subunit alphachromosome CDS1722328 642 - 0.478193
ribF SF0021 hypothetical proteinchromosome CDS20362 942 + 0.529724
ribH SF0352 riboflavin synthase subunit betachromosome CDS364144 471 + 0.522293
rimK SF0806 ribosomal protein S6 modification proteinchromosome CDS838722 903 + 0.554817
serA SF2898 D-3-phosphoglycerate dehydrogenasechromosome CDS2991484 1233 - 0.52717
serC SF0902 phosphoserine aminotransferasechromosome CDS940005 1089 + 0.503214
tbpA SF0063 thiamin-binding periplasmic proteinchromosome CDS72339 984 - 0.527439
thiC SF4066 thiamine biosynthesis protein ThiCchromosome CDS4213038 1896 - 0.55538
thiD SF2165 phosphomethylpyrimidine kinasechromosome CDS2189239 801 - 0.55181
thiE SF4065 thiamine-phosphate pyrophosphorylasechromosome CDS4212403 636 - 0.578616
thiF SF4064 thiamine biosynthesis protein ThiFchromosome CDS4211655 756 - 0.56746
thiG SF4063 thiazole synthasechromosome CDS4210699 846 - 0.58156
thiH SF4062 thiamine biosynthesis protein ThiHchromosome CDS4209569 1134 - 0.547619
thiL SF0354 thiamine monophosphate kinasechromosome CDS365131 978 + 0.543967
thiM SF2166 hydroxyethylthiazole kinasechromosome CDS2190036 789 - 0.541191
trbH CP0244 hypothetical proteinpCP301 CDS198108 720 + 0.495833
trpD SF1266 anthranilate phosphoribosyltransferasechromosome CDS1316110 1596 - 0.561404
trpE SF1267 anthranilate synthase component Ichromosome CDS1317705 1563 - 0.539987
ubiA SF4165 4-hydroxybenzoate octaprenyltransferasechromosome CDS4335894 873 - 0.510882
ubiB SF3920 NAD(P)H-flavin reductasechromosome CDS4039667 702 + 0.527066
ubiC SF4166 chorismate lyasechromosome CDS4336779 498 - 0.52008
ubiE SF3911 ubiquinone/menaquinone biosynthesis methyltransferasechromosome CDS4031995 756 + 0.519841
ubiG SF2312 3-demethylubiquinone-9 3-methyltransferasechromosome CDS2355007 723 + 0.543568
ubiH SF2893 2-octaprenyl-6-methoxyphenyl hydroxylasechromosome CDS2986254 1179 - 0.597116
ubiX SF2387 3-octaprenyl-4-hydroxybenzoate carboxy-lyasechromosome CDS2436169 570 - 0.531579
visC SF2892 hypothetical proteinchromosome CDS2985029 1203 - 0.551953
yabJ SF0061 putative ATP-binding component of a transport systemchromosome CDS70071 699 - 0.572246
yclC SF2761 putative 4-hydroxybenzoate decarboxylasechromosome CDS2836479 951 - 0.564669
ygcM SF2781 putative 6-pyruvoyl tetrahydrobiopterin synthasechromosome CDS2856240 363 + 0.490358
ygdL SF2826 putative enzymechromosome CDS2905471 807 - 0.551425
ygfA SF2897 putative ligasechromosome CDS2990155 549 + 0.520947
yggW SF2946 coproporphyrinogen III oxidasechromosome CDS3035562 1137 + 0.523307
ygiG SF3099 putative kinasechromosome CDS3193329 369 - 0.506775
yhhU SF3493 hypothetical proteinchromosome CDS3583493 588 + 0.566327
yiaE SF3587 2-hydroxyacid dehydrogenasechromosome CDS3688375 975 + 0.52
yieE SF3748 hypothetical proteinchromosome CDS3856086 750 - 0.521333
yigC SF3919 putative oxidoreductasechromosome CDS4038128 1494 + 0.535475
yleB SF0620 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylasechromosome CDS655443 1176 - 0.560374
yojL SF2298 hypothetical proteinchromosome CDS2331865 1056 - 0.534091