Gene list
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COG category: Intracellular trafficking and secretion
Organism: Escherichia coli CFT073, CFT073
Number of genes found: 152
Show UniProt / TrEMBL protein name | View in Fasta format (DNA) | View in Fasta format (Protein) | ||||
Escherichia coli CFT073, CFT073 | ||||||||
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Name | Locus tag | Product / Description | Genomic element | Type | Begin | Length | Strand | GC-content |
NA | c4213 | Chaperone protein fimC precursor | chromosome | CDS | 3998067 | 780 | - | 0.382051 |
NA | c2394 | PilV-like protein | chromosome | CDS | 2197781 | 1464 | - | 0.441257 |
NA | c1936 | Type-1 fimbrial protein, A chain precursor | chromosome | CDS | 1778297 | 612 | - | 0.444444 |
NA | c3170 | Putative capsid protein of prophage | chromosome | CDS | 3040953 | 1434 | - | 0.609484 |
NA | c3655 | Antigen 43 precursor | chromosome | CDS | 3491808 | 3129 | + | 0.582934 |
NA | c1572 | Putative capsid assembly protein of prophage | chromosome | CDS | 1429149 | 1506 | + | 0.60093 |
NA | c0319 | Putative oligogalacturonide lyase | chromosome | CDS | 289986 | 1173 | + | 0.387894 |
NA | c1468 | hypothetical protein | chromosome | CDS | 1368995 | 2064 | + | 0.483043 |
NA | c0350 | Pic serine protease precursor | chromosome | CDS | 326209 | 4116 | - | 0.499514 |
NA | c4208 | Putative fimbrial chaperone precursor | chromosome | CDS | 3993608 | 798 | - | 0.388471 |
NA | c0545 | hypothetical protein | chromosome | CDS | 527471 | 600 | + | 0.528333 |
NA | c1273 | Antigen 43 precursor | chromosome | CDS | 1225454 | 3276 | + | 0.578144 |
NA | c0360 | hypothetical protein | chromosome | CDS | 336046 | 1248 | + | 0.455128 |
NA | c1619 | hypothetical protein | chromosome | CDS | 1461577 | 327 | + | 0.507645 |
NA | c1448 | Putative capsid assembly protein of prophage | chromosome | CDS | 1352906 | 1506 | + | 0.602922 |
NA | c4209 | Putative minor fimbrial subunit precursor | chromosome | CDS | 3994350 | 558 | - | 0.356631 |
NA | c4222 | Putative DNA processing protein | chromosome | CDS | 4011694 | 1296 | - | 0.506173 |
NA | c4424 | Putative adhesin | chromosome | CDS | 4205984 | 5337 | + | 0.5267 |
NA | c4210 | Putative minor fimbrial subunit precursor | chromosome | CDS | 3994873 | 453 | - | 0.401766 |
NA | c1207 | hypothetical protein | chromosome | CDS | 1163191 | 1614 | + | 0.519827 |
NA | c0393 | Haemoglobin protease | chromosome | CDS | 371877 | 4131 | - | 0.48366 |
NA | c4786 | sec-independent translocase | chromosome | CDS | 4548070 | 516 | + | 0.544574 |
NA | c4518 | hypothetical protein | chromosome | CDS | 4303576 | 438 | - | 0.502283 |
NA | c0363 | Putative RTX family exoprotein A gene | chromosome | CDS | 340972 | 4833 | + | 0.489137 |
NA | c1206 | hypothetical protein | chromosome | CDS | 1161999 | 1233 | + | 0.556367 |
NA | c2895 | yapH homolog | chromosome | CDS | 2748603 | 7164 | - | 0.489671 |
NA | c1205 | hypothetical protein | chromosome | CDS | 1159313 | 2727 | + | 0.56289 |
NA | c3702 | hypothetical protein | chromosome | CDS | 3532178 | 414 | - | 0.5 |
NA | c1615 | hypothetical protein | chromosome | CDS | 1459716 | 528 | + | 0.49053 |
NA | c0478 | Putative structural protein | chromosome | CDS | 465478 | 2988 | + | 0.459839 |
NA | c1765 | Partial Putative outer membrane channel protein | chromosome | CDS | 1600755 | 1374 | + | 0.539301 |
NA | c1935 | Chaperone protein fimC precursor | chromosome | CDS | 1777225 | 711 | - | 0.452883 |
NA | c1934 | Outer membrane usher protein fimD precursor | chromosome | CDS | 1774532 | 2652 | - | 0.443439 |
NA | c0426 | hypothetical protein | chromosome | CDS | 410042 | 2331 | - | 0.460317 |
NA | c4214 | Putative major fimbrial subunit precursor | chromosome | CDS | 3998920 | 705 | - | 0.476596 |
NA | c0345 | Putative member of ShlA/HecA/FhaA exoprotein family | chromosome | CDS | 312645 | 9651 | + | 0.555694 |
ccmD | c2735 | Heme exporter protein D | chromosome | CDS | 2582885 | 210 | - | 0.566667 |
clpP | c0553 | ATP-dependent Clp protease proteolytic subunit | chromosome | CDS | 530604 | 624 | + | 0.501603 |
cpxP | c4865 | hypothetical protein | chromosome | CDS | 4625475 | 504 | + | 0.501984 |
cusC | c0658 | Probable outer membrane lipoprotein cusC precursor | chromosome | CDS | 639221 | 1383 | + | 0.516992 |
eaeH | c0415 | Putative adhesin | chromosome | CDS | 395711 | 4251 | + | 0.519878 |
ecpD | c0171 | Chaperone protein ecpD precursor | chromosome | CDS | 165999 | 741 | - | 0.442645 |
exbB | c3741 | Biopolymer transport exbB protein | chromosome | CDS | 3572894 | 735 | - | 0.52381 |
exbD | c3740 | Biopolymer transport exbD protein | chromosome | CDS | 3572462 | 426 | - | 0.483568 |
ffh | c3131 | Signal recognition particle protein | chromosome | CDS | 3009020 | 1362 | - | 0.542584 |
fhiA | c0377 | FhiA protein | chromosome | CDS | 356346 | 1740 | - | 0.571839 |
fimA | c5393 | Type-1 fimbrial protein, A chain precursor | chromosome | CDS | 5137789 | 606 | + | 0.493399 |
fimC | c5395 | Chaperone protein fimC precursor | chromosome | CDS | 5139035 | 726 | + | 0.446281 |
fimD | c5396 | Outer membrane usher protein fimD precursor | chromosome | CDS | 5139826 | 2637 | + | 0.482746 |
fimF | c5397 | FimF protein precursor | chromosome | CDS | 5142469 | 534 | + | 0.490637 |
fimG | c5399 | FimG protein precursor | chromosome | CDS | 5143015 | 504 | + | 0.521825 |
fimI | c5394 | Fimbrin-like protein fimI precursor | chromosome | CDS | 5138459 | 540 | + | 0.496296 |
flgM | c1340 | Negative regulator of flagellin synthesis | chromosome | CDS | 1273338 | 294 | - | 0.530612 |
flgN | c1339 | Flagella synthesis protein flgN | chromosome | CDS | 1272917 | 417 | - | 0.482014 |
flhA | c2293 | flagellar biosynthesis protein | chromosome | CDS | 2113793 | 2154 | - | 0.550139 |
flhB | c2294 | flagellar biosynthesis protein | chromosome | CDS | 2115864 | 1149 | - | 0.550914 |
fliE | c2353 | flagellar basal body protein | chromosome | CDS | 2164468 | 345 | - | 0.536232 |
fliF | c2354 | flagellar M-ring protein | chromosome | CDS | 2164997 | 1659 | + | 0.549729 |
fliH | c2357 | flagellar assembly protein | chromosome | CDS | 2167615 | 708 | + | 0.573446 |
fliI | c2358 | flagellum-specific ATP synthase | chromosome | CDS | 2168322 | 1374 | + | 0.582969 |
fliJ | c2359 | flagellar protein | chromosome | CDS | 2169714 | 444 | + | 0.522523 |
fliN | c2363 | flagellar motor switch protein | chromosome | CDS | 2172856 | 414 | + | 0.557971 |
fliP | c2365 | flagellar biosynthesis protein | chromosome | CDS | 2173637 | 738 | + | 0.53794 |
fliQ | c2366 | flagellar biosynthesis protein | chromosome | CDS | 2174384 | 270 | + | 0.511111 |
fliR | c2367 | flagellar biosynthesis protein | chromosome | CDS | 2174662 | 786 | + | 0.469466 |
fliS | c2340 | flagellar protein FliS | chromosome | CDS | 2154981 | 411 | + | 0.479319 |
focA | c1239 | F1C major fimbrial subunit precursor | chromosome | CDS | 1188213 | 543 | + | 0.443831 |
focC | c1241 | F1C periplasmic chaperone | chromosome | CDS | 1189406 | 696 | + | 0.452586 |
focD | c1242 | F1C fimbrial usher | chromosome | CDS | 1190123 | 2679 | + | 0.52221 |
focF | c1243 | F1C minor fimbrial subunit F precursor | chromosome | CDS | 1192814 | 528 | + | 0.467803 |
focG | c1244 | F1C minor fimbrial subunit protein G presursor | chromosome | CDS | 1193363 | 504 | + | 0.418651 |
focH | c1245 | F1C Putative fimbrial adhesin precursor | chromosome | CDS | 1193817 | 1011 | + | 0.479723 |
ftsY | c4257 | Cell division protein ftsY | chromosome | CDS | 4041243 | 1497 | - | 0.530394 |
hofB | c0126 | Protein transport protein hofB | chromosome | CDS | 120853 | 1386 | - | 0.536075 |
hofC | c0125 | Protein transport protein hofC | chromosome | CDS | 119661 | 1203 | - | 0.522028 |
hofD | c4106 | Leader peptidase | chromosome | CDS | 3896922 | 678 | + | 0.504425 |
hofF | c4098 | Putative general secretion pathway protein F | chromosome | CDS | 3891196 | 1197 | + | 0.509607 |
hofG | c4099 | Putative general secretion pathway protein G precursor | chromosome | CDS | 3892402 | 438 | + | 0.493151 |
hofH | c4100 | Putative general secretion pathway protein H precursor | chromosome | CDS | 3892847 | 510 | + | 0.554902 |
hofQ | c4161 | Protein transport protein hofQ precursor | chromosome | CDS | 3945518 | 1239 | - | 0.538337 |
htrE | c0170 | Outer membrane usher protein htrE precursor | chromosome | CDS | 163376 | 2589 | - | 0.447277 |
lepB | c3092 | Signal peptidase I | chromosome | CDS | 2967202 | 975 | - | 0.517949 |
lspA | c0031 | signal peptidase II | chromosome | CDS | 27469 | 495 | + | 0.523232 |
marC | c1951 | Multiple antibiotic resistance protein marC | chromosome | CDS | 1794147 | 666 | - | 0.503003 |
nfrB | c0655 | Bacteriophage N4 adsorption protein B | chromosome | CDS | 634562 | 2163 | - | 0.526121 |
papA | c3592 | PapA protein | chromosome | CDS | 3436965 | 600 | - | 0.418333 |
papA_2 | c5188 | PapA protein | chromosome | CDS | 4948203 | 597 | - | 0.41206 |
papC | c3590 | PapC protein | chromosome | CDS | 3433739 | 2523 | - | 0.524772 |
papC_2 | c5186 | PapC protein | chromosome | CDS | 4944977 | 2532 | - | 0.525671 |
papD | c3589 | PapD protein | chromosome | CDS | 3432934 | 606 | - | 0.450495 |
papD_2 | c5185 | PapD protein | chromosome | CDS | 4944172 | 735 | - | 0.458503 |
papK | c3586 | PapK protein | chromosome | CDS | 3431770 | 540 | - | 0.542593 |
papK_2 | c5182 | PapK protein | chromosome | CDS | 4943008 | 540 | - | 0.542593 |
ppdA | c3420 | Prepilin peptidase dependent protein A precursor | chromosome | CDS | 3271027 | 471 | - | 0.543524 |
ppdB | c3419 | Prepilin peptidase dependent protein B precursor | chromosome | CDS | 3270473 | 588 | - | 0.52381 |
ppdD | c0127 | Prepilin peptidase dependent protein D precursor | chromosome | CDS | 122248 | 441 | - | 0.526077 |
prlA | c4061 | preprotein translocase SecY | chromosome | CDS | 3874142 | 1332 | - | 0.495495 |
sat | c3619 | Aecreted auto transpoter toxin | chromosome | CDS | 3456362 | 3900 | - | 0.415128 |
secA | c0116 | translocase | chromosome | CDS | 112106 | 2706 | + | 0.521064 |
secB | c4432 | export protein SecB | chromosome | CDS | 4217846 | 528 | - | 0.5 |
secD | c0518 | protein export protein SecD | chromosome | CDS | 501838 | 1848 | + | 0.532468 |
secE | c4936 | translocase | chromosome | CDS | 4709606 | 384 | + | 0.549479 |
secF | c0519 | protein export protein SecF | chromosome | CDS | 503651 | 1017 | + | 0.521141 |
secG | c3931 | protein-export membrane protein | chromosome | CDS | 3755804 | 381 | - | 0.501312 |
sfaD | c1240 | Putative minor F1C fimbrial subunit precursor | chromosome | CDS | 1188841 | 525 | + | 0.506667 |
smf | c4046 | Unknown protein fragment 1 | chromosome | CDS | 3863803 | 1125 | - | 0.506667 |
sohB | c1737 | Possible protease sohB | chromosome | CDS | 1572932 | 1050 | + | 0.50381 |
sppA | c2170 | Protease IV | chromosome | CDS | 2006066 | 1857 | + | 0.518578 |
spy | c2143 | Spheroplast protein Y precursor | chromosome | CDS | 1978985 | 486 | - | 0.510288 |
tatA | c4785 | twin argininte translocase protein A | chromosome | CDS | 4547755 | 312 | + | 0.451923 |
tatE | c0717 | twin argininte translocase protein A | chromosome | CDS | 699539 | 204 | + | 0.5 |
tolB | c0819 | translocation protein TolB precursor | chromosome | CDS | 800407 | 1296 | + | 0.530864 |
tolC | c3781 | outer membrane channel precursor protein | chromosome | CDS | 3614867 | 1521 | + | 0.514135 |
tolQ | c0816 | TolQ protein | chromosome | CDS | 797823 | 693 | + | 0.503608 |
tolR | c0817 | TolR protein | chromosome | CDS | 798519 | 429 | + | 0.515152 |
yadK | c0167 | Protein yadK | chromosome | CDS | 161550 | 597 | - | 0.432161 |
yadM | c0169 | Hypothetical protein yadM precursor | chromosome | CDS | 162793 | 567 | - | 0.417989 |
yadN | c0172 | Hypothetical fimbrial-like protein yadN precursor | chromosome | CDS | 166848 | 615 | - | 0.426016 |
yajC | c0517 | preprotein translocase subunit YajC | chromosome | CDS | 501448 | 363 | + | 0.46832 |
ybbJ | c0609 | Hypothetical protein ybbJ | chromosome | CDS | 590361 | 459 | - | 0.583878 |
ycbS | c4212 | Hypothetical outer membrane usher protein ycbS precursor | chromosome | CDS | 3995436 | 2595 | - | 0.419653 |
ychE | c1706 | Hypothetical protein yhcE | chromosome | CDS | 1543724 | 648 | + | 0.475309 |
ydeR | c1932 | Hypothetical fimbrial-like protein ydeR precursor | chromosome | CDS | 1773472 | 504 | - | 0.434524 |
ydeS | c1933 | Hypothetical fimbrial-like protein ydeS precursor | chromosome | CDS | 1773988 | 531 | - | 0.436911 |
ydeU | c2894 | Hypothetical protein ydeU | chromosome | CDS | 2747815 | 876 | - | 0.472603 |
ydhQ | c2058 | Hypothetical protein ydhQ | chromosome | CDS | 1901009 | 1257 | - | 0.512331 |
yehB | c2636 | Hypothetical outer membrane usher protein yehB precursor | chromosome | CDS | 2479102 | 2496 | - | 0.452724 |
yehC | c2637 | Hypothetical fimbrial chaperone yehC precursor | chromosome | CDS | 2481598 | 675 | - | 0.386667 |
yfaL | c2775 | Hypothetical protein yfaL precursor | chromosome | CDS | 2627282 | 3765 | - | 0.50571 |
yfcP | c2879 | Hypothetical fimbrial-like protein yfcP precursor | chromosome | CDS | 2732134 | 528 | - | 0.545455 |
yfcS | c2882 | Hypothetical fimbrial chaperone yfcS precursor | chromosome | CDS | 2733654 | 753 | - | 0.552457 |
yfcU | c2883 | Putative outer membrane protein | chromosome | CDS | 2734426 | 2655 | - | 0.544256 |
yggR | c3536 | Hypothetical protein yggR | chromosome | CDS | 3390045 | 1056 | - | 0.543561 |
yghD | c3699 | Putative general secretion pathway protein M-type yghD | chromosome | CDS | 3530466 | 537 | - | 0.549348 |
yheE | c4095 | Probable general secretion pathway protein C | chromosome | CDS | 3886957 | 816 | + | 0.417892 |
yheF | c4096 | Probable general secretion pathway protein D precursor | chromosome | CDS | 3887744 | 1965 | + | 0.499237 |
yheG | c4097 | Probable general secretion pathway protein E | chromosome | CDS | 3889718 | 1482 | + | 0.518219 |
yheH | c4101 | Probable general secretion pathway protein I precursor | chromosome | CDS | 3893314 | 417 | + | 0.494005 |
yheI | c4102 | Probable general secretion pathway protein J precursor | chromosome | CDS | 3893723 | 588 | + | 0.5 |
yheJ | c4103 | Probable general secretion pathway protein K | chromosome | CDS | 3894303 | 906 | + | 0.497792 |
yheK | c4104 | Probable general secretion pathway protein L | chromosome | CDS | 3895298 | 1167 | + | 0.481577 |
yhgN | c4221 | Hypothetical protein yhgN | chromosome | CDS | 4011055 | 594 | + | 0.503367 |
yidC | c4629 | inner membrane protein translocase component YidC | chromosome | CDS | 4386813 | 1647 | + | 0.538555 |
yidR | c4609 | Hypothetical protein yidR | chromosome | CDS | 4369798 | 1251 | - | 0.541966 |
yjaI | c4959 | Zinc resistance-associated protein precursor | chromosome | CDS | 4732470 | 561 | - | 0.509804 |
yjcP | c5085 | Hypothetical outer-membrane lipoprotein yjcP precursor | chromosome | CDS | 4858723 | 1467 | - | 0.560327 |
yjjA | c5439 | Hypothetical protein yjjA precursor | chromosome | CDS | 5188682 | 498 | - | 0.491968 |
yohG | c2671 | Putative channel/filament proteins | chromosome | CDS | 2519000 | 1527 | - | 0.542895 |
yqeC | c3454 | Hypothetical protein yqeC | chromosome | CDS | 3310549 | 771 | - | 0.490272 |
yqiG | c3792 | Hypothetical outer membrane usher protein yqiG precursor | chromosome | CDS | 3625228 | 2523 | + | 0.467697 |
yqiH | c3793 | Hypothetical fimbrial chaperone yqiH precursor | chromosome | CDS | 3627757 | 750 | + | 0.476 |
yrfC | c4164 | Hypothetical protein yrfC | chromosome | CDS | 3947486 | 540 | - | 0.540741 |