Gene list
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COG category: Intracellular trafficking and secretion
Organism: Yersinia pestis KIM, KIM
Number of genes found: 162
Show UniProt / TrEMBL protein name | View in Fasta format (DNA) | View in Fasta format (Protein) | ||||
Yersinia pestis KIM, KIM | ||||||||
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Name | Locus tag | Product / Description | Genomic element | Type | Begin | Length | Strand | GC-content |
NA | y3197 | L-like GSP protein | chromosome | CDS | 3516898 | 1191 | - | 0.319899 |
NA | y2388 | fimbrial precursor | chromosome | CDS | 2639085 | 570 | + | 0.473684 |
NA | y2025 | channel protein | chromosome | CDS | 2232322 | 645 | + | 0.452713 |
NA | y0514 | secretin | chromosome | CDS | 585508 | 1572 | + | 0.43257 |
NA | y1351 | fimbrial biogenesis protein | chromosome | CDS | 1502195 | 750 | + | 0.492 |
NA | y3200 | hypothetical protein | chromosome | CDS | 3520008 | 591 | - | 0.338409 |
NA | y3482 | hypothetical protein | chromosome | CDS | 3865823 | 423 | + | 0.385343 |
NA | y3462 | flagellar assembly protein | chromosome | CDS | 3844754 | 744 | - | 0.537634 |
NA | y0533 | type III secretion system component | chromosome | CDS | 599218 | 1071 | + | 0.489262 |
NA | y4062 | hypothetical protein | chromosome | CDS | 4506192 | 1830 | - | 0.448087 |
NA | y2786 | outer membrane protein | chromosome | CDS | 3081476 | 1095 | - | 0.405479 |
NA | y0567 | hypothetical protein | chromosome | CDS | 638175 | 3804 | - | 0.532334 |
NA | y0704 | outer membrane protein, efflux pump | chromosome | CDS | 790524 | 1407 | + | 0.510306 |
NA | y0941 | membrane protein, C-terminal part of adhesin system component | chromosome | CDS | 1056129 | 1791 | + | 0.455053 |
NA | y3470 | hypothetical protein | chromosome | CDS | 3852162 | 273 | + | 0.450549 |
NA | y0531 | type III secretion system component | chromosome | CDS | 598154 | 282 | + | 0.482269 |
NA | y4060 | chaperone | chromosome | CDS | 4504671 | 828 | - | 0.426329 |
NA | y3428 | adhesin | chromosome | CDS | 3805501 | 2001 | + | 0.588206 |
NA | y0943 | hypothetical protein | chromosome | CDS | 1059114 | 4581 | + | 0.445536 |
NA | y1095 | hypothetical protein | chromosome | CDS | 1235010 | 450 | - | 0.502222 |
NA | y1872 | fimbrial componenet | chromosome | CDS | 2067827 | 1170 | + | 0.460684 |
NA | y1871 | usher protein | chromosome | CDS | 2065224 | 2613 | + | 0.493685 |
NA | y3823 | hypothetical protein | chromosome | CDS | 4251752 | 1392 | + | 0.383621 |
NA | y3468 | hypothetical protein | chromosome | CDS | 3850980 | 414 | + | 0.444444 |
NA | Y1099 | F1 capsule | pMT-1 | CDS | 79152 | 2502 | + | 0.396083 |
NA | y0453 | hypothetical protein | chromosome | CDS | 504995 | 663 | + | 0.505279 |
NA | y1846 | hypothetical protein | chromosome | CDS | 2034735 | 2211 | + | 0.581637 |
NA | y3824 | hemolysin activator protein precursor | chromosome | CDS | 4253228 | 1788 | + | 0.457494 |
NA | y3488 | hypothetical protein | chromosome | CDS | 3871261 | 813 | + | 0.328413 |
NA | y1873 | pilin chaperone | chromosome | CDS | 2068993 | 804 | + | 0.482587 |
NA | y1344 | hypothetical protein | chromosome | CDS | 1488476 | 300 | - | 0.52 |
NA | y3195 | type IV prepilin peptidase | chromosome | CDS | 3515572 | 915 | - | 0.357377 |
NA | y2390 | outer membrane usher protein | chromosome | CDS | 2640440 | 2592 | + | 0.494985 |
NA | y3288 | hypothetical protein | chromosome | CDS | 3617319 | 1926 | - | 0.543095 |
NA | y1858 | hypothetical protein | chromosome | CDS | 2048629 | 2448 | - | 0.461193 |
NA | y3479 | chaperone | chromosome | CDS | 3861595 | 720 | - | 0.488889 |
NA | y3198 | hypothetical protein | chromosome | CDS | 3518072 | 957 | - | 0.314525 |
NA | y1869 | fimbrial protein | chromosome | CDS | 2063668 | 543 | + | 0.425414 |
NA | y0454 | hypothetical protein | chromosome | CDS | 505660 | 777 | + | 0.449163 |
NA | y2785 | hypothetical protein | chromosome | CDS | 3079608 | 1869 | - | 0.387373 |
NA | y3879 | hypothetical protein | chromosome | CDS | 4319911 | 585 | - | 0.466667 |
NA | y0532 | type III secretion system component | chromosome | CDS | 598437 | 795 | + | 0.515723 |
NA | y3490 | hypothetical protein | chromosome | CDS | 3872887 | 771 | + | 0.35668 |
NA | y3573 | hypothetical protein | chromosome | CDS | 3956529 | 2286 | + | 0.547244 |
NA | y3170 | hypothetical protein | chromosome | CDS | 3488692 | 570 | - | 0.461404 |
NA | y0529 | type III secretion protein | chromosome | CDS | 596406 | 963 | + | 0.54621 |
NA | y3578 | hypothetical protein | chromosome | CDS | 3960892 | 150 | - | 0.513333 |
NA | y3199 | hypothetical protein | chromosome | CDS | 3519037 | 669 | - | 0.312407 |
NA | y1834 | hypothetical protein | chromosome | CDS | 2018786 | 3138 | + | 0.543658 |
NA | y1859 | pilus assembly chaperone | chromosome | CDS | 2051247 | 753 | - | 0.446215 |
NA | y0563 | hypothetical protein | chromosome | CDS | 631245 | 744 | + | 0.435484 |
NA | y3478 | adhesin | chromosome | CDS | 3860464 | 1107 | - | 0.487805 |
NA | Y1051 | hypothetical protein | pMT-1 | CDS | 42469 | 2937 | + | 0.49983 |
NA | y4063 | fimbrial-like protein | chromosome | CDS | 4508097 | 645 | - | 0.427907 |
NA | y0530 | type III secretion system component | chromosome | CDS | 597435 | 711 | + | 0.451477 |
NA | y1847 | hypothetical protein | chromosome | CDS | 2036932 | 435 | + | 0.547126 |
NA | y0452 | hypothetical protein | chromosome | CDS | 504725 | 267 | + | 0.438202 |
NA | y0351 | chaperone | chromosome | CDS | 391813 | 756 | - | 0.42328 |
NA | y3326 | protein transport | chromosome | CDS | 3659626 | 1131 | - | 0.476569 |
NA | y3204 | general secretion protein | chromosome | CDS | 3523708 | 1923 | - | 0.333333 |
NA | y0352 | fimbrial protein (precursor) | chromosome | CDS | 392608 | 531 | - | 0.436911 |
NA | y1539 | fimbrial protein | chromosome | CDS | 1705756 | 555 | + | 0.443243 |
NA | y1544 | fimbrial protein | chromosome | CDS | 1711336 | 609 | + | 0.425287 |
NA | y0562 | hypothetical protein | chromosome | CDS | 628795 | 2379 | + | 0.461959 |
NA | y3169 | hypothetical protein | chromosome | CDS | 3488093 | 609 | - | 0.486043 |
NA | y3493 | hypothetical protein | chromosome | CDS | 3874708 | 1557 | + | 0.353886 |
NA | y3579 | filamentous hemagglutinin | chromosome | CDS | 3961333 | 9888 | - | 0.57231 |
NA | y1454 | hypothetical protein | chromosome | CDS | 1611263 | 2280 | - | 0.442544 |
NA | y3489 | hypothetical protein | chromosome | CDS | 3872070 | 834 | + | 0.302158 |
NA | y0525 | type III secretion system component | chromosome | CDS | 592273 | 2055 | + | 0.519221 |
NA | y3485 | hypothetical protein | chromosome | CDS | 3868029 | 450 | + | 0.433333 |
NA | y3925 | hypothetical protein | chromosome | CDS | 4384144 | 942 | + | 0.514862 |
NA | y3575 | hypothetical protein | chromosome | CDS | 3959310 | 621 | - | 0.599034 |
NA | y1704 | hypothetical protein | chromosome | CDS | 1886965 | 393 | + | 0.450382 |
NA | y2389 | pilin chaperone | chromosome | CDS | 2639747 | 645 | + | 0.424806 |
NA | y0407 | hypothetical protein | chromosome | CDS | 456209 | 528 | - | 0.477273 |
NA | y3580 | hemolysin activator protein | chromosome | CDS | 3971265 | 1689 | - | 0.541741 |
NA | y2268 | hemolysin activator protein | chromosome | CDS | 2501386 | 1635 | - | 0.372477 |
NA | y0942 | membrane protein, N-terminal part of adhesin system component | chromosome | CDS | 1057960 | 1161 | + | 0.507321 |
NA | y3484 | hypothetical protein | chromosome | CDS | 3867160 | 855 | + | 0.357895 |
NA | y1696 | hemolysin activator protein | chromosome | CDS | 1872539 | 1689 | + | 0.53878 |
NA | y0066 | solute-binding periplasmic protein of ABC transpoter | chromosome | CDS | 76410 | 489 | - | 0.466258 |
NA | y3884 | hypothetical protein | chromosome | CDS | 4325060 | 9042 | + | 0.511944 |
NA | y2267 | hemolysin | chromosome | CDS | 2496626 | 4731 | - | 0.412598 |
NA | y3427 | hypothetical protein | chromosome | CDS | 3803738 | 1659 | + | 0.46956 |
NA | y4061 | outer membrane usher protein | chromosome | CDS | 4505531 | 636 | - | 0.490566 |
NA | y2392 | pilin chaperone | chromosome | CDS | 2644393 | 741 | + | 0.442645 |
NA | y1899 | hypothetical protein | chromosome | CDS | 2096512 | 714 | - | 0.436975 |
NA | y3429 | virG protein | chromosome | CDS | 3808157 | 3771 | + | 0.531159 |
NA | y3465 | hypothetical protein | chromosome | CDS | 3848140 | 381 | - | 0.514436 |
NA | y4117 | inner membrane protein translocase component YidC | chromosome | CDS | 4567959 | 1641 | + | 0.481414 |
NA | y1701 | hemagglutinin-like secreted protein | chromosome | CDS | 1883637 | 2046 | + | 0.517595 |
NA | y3486 | hypothetical protein | chromosome | CDS | 3868671 | 1233 | + | 0.334955 |
NA | y1697 | hemagglutinin-like secreted protein | chromosome | CDS | 1874239 | 7740 | + | 0.572481 |
NA | y3203 | general secretion protein | chromosome | CDS | 3522200 | 1512 | - | 0.39418 |
caf1M | Y1098 | F1 capsule | pMT-1 | CDS | 78351 | 777 | + | 0.405405 |
ccmD | y1570 | heme exporter protein D | chromosome | CDS | 1737124 | 303 | + | 0.518152 |
clpP | y1027 | ATP-dependent Clp protease proteolytic subunit | chromosome | CDS | 1156547 | 624 | + | 0.461538 |
cyaE | y3560 | hypothetical protein | chromosome | CDS | 3940611 | 1527 | + | 0.521938 |
ecpD | y1870 | pilin chaperone | chromosome | CDS | 2064363 | 780 | + | 0.441026 |
ecpD | y1541 | pilin chaperone | chromosome | CDS | 1706449 | 780 | + | 0.411538 |
exbB | y3495 | TonB complex protein | chromosome | CDS | 3876796 | 1062 | - | 0.520716 |
exbD | y3494 | TonB-complex protein | chromosome | CDS | 3876361 | 432 | - | 0.483796 |
ffh | y0892 | GTP-binding export factor | chromosome | CDS | 1002978 | 1362 | + | 0.483847 |
fimD | y0350 | outer membrane usher protein FIMD precursor | chromosome | CDS | 389158 | 2628 | - | 0.471081 |
flgM | y2513 | anti-FliA factor | chromosome | CDS | 2773415 | 303 | + | 0.475248 |
flgN | y2514 | flagellar biosynthesis protein | chromosome | CDS | 2773733 | 444 | + | 0.488739 |
flhA | y2518 | flagellar biosynthesis protein | chromosome | CDS | 2779066 | 2079 | - | 0.518037 |
flhB | y2519 | flagellar biosynthesis protein | chromosome | CDS | 2781144 | 1161 | - | 0.525409 |
flhB | y3472 | flagellar biosynthesis protein | chromosome | CDS | 3853214 | 1134 | + | 0.446208 |
fliE | y2475 | flagellar basal body protein | chromosome | CDS | 2739174 | 318 | - | 0.493711 |
fliF | y2476 | flagellar M-ring protein | chromosome | CDS | 2739838 | 1713 | + | 0.532983 |
fliF | y3464 | flagellar M-ring protein | chromosome | CDS | 3846490 | 1641 | - | 0.502133 |
fliH | y2478 | flagellar assembly protein | chromosome | CDS | 2742511 | 738 | + | 0.550135 |
fliI | y3461 | flagellum-specific ATP synthase | chromosome | CDS | 3843421 | 1341 | - | 0.580164 |
fliI | y2479 | flagellum-specific ATP synthase | chromosome | CDS | 2743187 | 1479 | + | 0.54902 |
fliI | y0526 | flagellum-specific ATP synthase | chromosome | CDS | 594314 | 1338 | + | 0.575486 |
fliJ | y2480 | flagellar protein | chromosome | CDS | 2744765 | 447 | + | 0.478747 |
fliN | y2484 | flagellar motor switch protein | chromosome | CDS | 2748301 | 417 | + | 0.494005 |
fliP | y3469 | flagellar biosynthesis protein | chromosome | CDS | 3851390 | 771 | + | 0.514916 |
fliP | y2486 | flagellar biosynthesis protein | chromosome | CDS | 2749250 | 825 | + | 0.513939 |
fliQ | y2487 | flagellar biosynthesis protein | chromosome | CDS | 2750180 | 270 | + | 0.522222 |
fliR | y2488 | flagellar biosynthesis protein | chromosome | CDS | 2750452 | 783 | + | 0.496807 |
fliR | y3471 | flagellar biosynthetic protein | chromosome | CDS | 3852435 | 780 | + | 0.475641 |
fliS | y2467 | flagellar protein FliS | chromosome | CDS | 2731874 | 399 | + | 0.466165 |
ftsY | y0416 | cell division membrane protein | chromosome | CDS | 464212 | 1662 | + | 0.480144 |
hofB | y0760 | integral membrane protein | chromosome | CDS | 847025 | 1557 | - | 0.460501 |
hofC | y0759 | integral membrane protein | chromosome | CDS | 845829 | 1200 | - | 0.455 |
hofF | y3202 | general protein secretion protein | chromosome | CDS | 3521012 | 1047 | - | 0.344795 |
hofG | y3201 | general protein secretion protein | chromosome | CDS | 3520555 | 438 | - | 0.394977 |
hofQ | y3932 | transport portein | chromosome | CDS | 4387085 | 1125 | + | 0.481778 |
hylA | y0021 | hemolysin precursor | chromosome | CDS | 29211 | 4965 | - | 0.444914 |
lepB | y1296 | leader peptidase (signal peptidase I) | chromosome | CDS | 1440151 | 999 | + | 0.49049 |
lspA | y3699 | signal peptidase II | chromosome | CDS | 4110543 | 510 | - | 0.454902 |
ogl | y1875 | oligogalacturonide lyase | chromosome | CDS | 2071544 | 1167 | + | 0.459297 |
papC | y3480 | outer membrane usher protein | chromosome | CDS | 3862332 | 2481 | - | 0.503023 |
papD | y0348 | pilus chaperone | chromosome | CDS | 386990 | 819 | - | 0.482295 |
ppdD | y0761 | prelipin peptidase dependent protein | chromosome | CDS | 848556 | 465 | - | 0.447312 |
prlA | y4010 | preprotein translocase SecY | chromosome | CDS | 4451951 | 1332 | + | 0.459459 |
psaB | y2881 | pH 6 Antigen chaperone protein | chromosome | CDS | 3183531 | 822 | - | 0.377129 |
psaC | y2880 | outer membrane usher protein | chromosome | CDS | 3180976 | 2514 | - | 0.492045 |
secA | y3617 | translocase | chromosome | CDS | 4008449 | 2715 | - | 0.48582 |
secB | y0074 | export protein SecB | chromosome | CDS | 83162 | 477 | - | 0.484277 |
secD | y0993 | protein export protein SecD | chromosome | CDS | 1123631 | 1848 | + | 0.487554 |
secE | y0478 | translocase | chromosome | CDS | 536162 | 399 | + | 0.486216 |
secF | y0994 | protein export protein SecF | chromosome | CDS | 1125423 | 1035 | + | 0.476328 |
secG | y0685 | protein-export membrane protein | chromosome | CDS | 769089 | 336 | + | 0.482143 |
smf1 | y4024 | hypothetical protein | chromosome | CDS | 4462694 | 1122 | + | 0.486631 |
smfA | y1593 | fimbrial A protein precursor | chromosome | CDS | 1761515 | 531 | + | 0.463277 |
sohB | y2057 | protease | chromosome | CDS | 2265449 | 1047 | + | 0.483286 |
sppA | y2160 | protease IV, a signal peptide peptidase | chromosome | CDS | 2387165 | 1851 | + | 0.480281 |
tadA | y3487 | secretion NTP hydrolase | chromosome | CDS | 3869915 | 1287 | + | 0.425796 |
tatE | y1170 | twin argininte translocase protein A | chromosome | CDS | 1314768 | 258 | + | 0.46124 |
tolB | y3055 | translocation protein TolB precursor | chromosome | CDS | 3363345 | 1293 | - | 0.4942 |
tolC | y3516 | outer membrane channel precursor protein | chromosome | CDS | 3898569 | 1404 | + | 0.47151 |
tolQ | y3058 | inner membrane protein | chromosome | CDS | 3366476 | 687 | - | 0.487627 |
tolR | y3057 | inner membrane protein | chromosome | CDS | 3366035 | 429 | - | 0.468531 |
yajC | y0992 | preprotein translocase subunit YajC | chromosome | CDS | 1123202 | 402 | + | 0.427861 |
yapC | y1134 | autotransporter | chromosome | CDS | 1274178 | 1917 | - | 0.47157 |
yapE | y3845 | autotransporter protein | chromosome | CDS | 4280307 | 3255 | + | 0.488786 |
yapH | y3396 | autotransporter adhesin | chromosome | CDS | 3747888 | 11133 | + | 0.528878 |
yfaL | y3591 | ATP-binding transport component | chromosome | CDS | 3984991 | 2985 | + | 0.448241 |