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2024-05-18 08:23:28

Gene list

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COG category: Intracellular trafficking and secretion
Organism: Escherichia coli K12, K-12

Number of genes found: 110

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Escherichia coli K12, K-12
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
ccmD b2198 cytochrome c biogenesis proteinchromosome CDS2293399 210 - 0.571429
clpP b0437 ATP-dependent Clp protease proteolytic subunitchromosome CDS455901 624 + 0.511218
cpxP b4484 periplasmic protein combats stresschromosome CDS4103843 501 + 0.500998
cusC b0572 copper/silver efflux system, outer membrane componentchromosome CDS594823 1374 + 0.512373
ecpD b0140 predicted periplasmic pilin chaperonechromosome CDS155461 741 - 0.443995
exbB b3006 membrane spanning protein in TonB-ExbB-ExbD complexchromosome CDS3149272 735 - 0.530612
exbD b3005 membrane spanning protein in TonB-ExbB-ExbD complexchromosome CDS3148840 426 - 0.502347
ffh b2610 Signal Recognition Particle (SRP) component with 4.5S RNA (ffs)chromosome CDS2744456 1362 - 0.54185
fimA b4314 major type 1 subunit fimbrin (pilin)chromosome CDS4541138 549 + 0.517304
fimC b4316 chaperone, periplasmicchromosome CDS4542327 726 + 0.444904
fimD b4317 outer membrane usher protein, type 1 fimbrial synthesischromosome CDS4543119 2637 + 0.486159
fimF b4318 minor component of type 1 fimbriaechromosome CDS4545765 531 + 0.495292
fimG b4319 minor component of type 1 fimbriaechromosome CDS4546308 504 + 0.52381
flgM b1071 anti-sigma factor for FliA (sigma 28)chromosome CDS1129058 294 - 0.527211
flgN b1070 export chaperone for FlgK and FlgLchromosome CDS1128637 417 - 0.482014
flhA b1879 flagellar biosynthesis protein Achromosome CDS1960996 2079 - 0.548822
flhB b1880 flagellar biosynthesis protein Bchromosome CDS1963067 1149 - 0.549173
fliE b1937 flagellar hook-basal body protein FliEchromosome CDS2010724 315 - 0.539683
fliF b1938 flagellar M-ring proteinchromosome CDS2011253 1659 + 0.546112
fliI b1941 flagellum-specific ATP synthasechromosome CDS2014578 1374 + 0.585881
fliJ b1942 flagellar biosynthesis chaperonechromosome CDS2015970 444 + 0.515766
fliN b1946 flagellar motor switch proteinchromosome CDS2019112 414 + 0.550725
fliP b1948 flagellar biosynthesis protein Pchromosome CDS2019893 738 + 0.531165
fliQ b1949 flagellar biosynthesis protein Qchromosome CDS2020640 270 + 0.503704
fliR b1950 flagellar biosynthesis protein Rchromosome CDS2020917 786 + 0.474555
fliS b1925 flagellar protein FliSchromosome CDS2003327 411 + 0.498783
flu b2000 CP4-44 prophage; antigen 43 (Ag43) phase-variable biofilm formation autotransporterchromosome CDS2069563 3120 + 0.582372
ftsY b3464 fused Signal Recognition Particle (SRP) receptor: membrane binding protein/conserved proteinchromosome CDS3600773 1494 - 0.534806
gspC b3324 general secretory pathway component, crypticchromosome CDS3453600 816 + 0.42402
gspE b3326 general secretory pathway component, crypticchromosome CDS3456361 1482 + 0.524966
gspF b3327 general secretory pathway component, crypticchromosome CDS3457839 1197 + 0.510443
gspG b3328 pseudopilin, cryptic, general secretion pathwaychromosome CDS3459045 438 + 0.486301
gspH b3329 predicted general secretory pathway component, crypticchromosome CDS3459490 510 + 0.560784
gspJ b3331 predicted general secretory pathway component, crypticchromosome CDS3460366 588 + 0.503401
gspK b3332 general secretory pathway component, crypticchromosome CDS3460946 984 + 0.502033
gspO b3335 bifunctional prepilin leader peptidase/ methylasechromosome CDS3463565 678 + 0.504425
hofB b0107 conserved protein with nucleoside triphosphate hydrolase domainchromosome CDS115714 1386 - 0.534632
hofC b0106 assembly protein in type IV pilin biogenesis, transmembrane proteinchromosome CDS114522 1203 - 0.519534
hofQ b3391 predicted fimbrial transporterchromosome CDS3517487 1239 - 0.544794
htrE b0139 predicted outer membrane usher proteinchromosome CDS152829 2598 - 0.43341
lepB b2568 leader peptidase (signal peptidase I)chromosome CDS2702357 975 - 0.52
lspA b0027 signal peptidase IIchromosome CDS25207 495 + 0.535354
marC b1529 predicted transporterchromosome CDS1616267 666 - 0.510511
nfrB b0569 bacteriophage N4 receptor, inner membrane subunitchromosome CDS590164 2238 - 0.525022
ppdA b2826 hypothetical proteinchromosome CDS2961729 471 - 0.541401
ppdB b2825 hypothetical proteinchromosome CDS2961175 564 - 0.52305
ppdD b0108 predicted major pilin subunitchromosome CDS117109 441 - 0.530612
secA b0098 translocasechromosome CDS108279 2706 + 0.524021
secB b3609 export protein SecBchromosome CDS3781684 468 - 0.508547
secD b0408 protein export protein SecDchromosome CDS426871 1848 + 0.531926
secE b3981 translocasechromosome CDS4175381 384 + 0.549479
secF b0409 protein export protein SecFchromosome CDS428729 972 + 0.516461
secG b3175 protein-export membrane proteinchromosome CDS3320195 333 - 0.495495
secY b3300 protein translocase subunit SecYchromosome CDS3440788 1332 - 0.496997
sfmA b0530 predicted fimbrial-like adhesin proteinchromosome CDS557435 543 + 0.445672
sfmC b0531 pilin chaperone, periplasmicchromosome CDS558197 693 + 0.425685
sfmD b0532 predicted outer membrane export usher proteinchromosome CDS558920 2604 + 0.478111
sfmF b0534 predicted fimbrial-like adhesin proteinchromosome CDS562553 516 + 0.5
smf b4473 hypothetical proteinchromosome CDS3430458 1125 - 0.509333
sohB b1272 predicted inner membrane peptidasechromosome CDS1327356 1050 + 0.505714
sppA b1766 protease IV (signal peptide peptidase)chromosome CDS1846861 1857 + 0.517501
spy b1743 envelope stress induced periplasmic proteinchromosome CDS1823164 486 - 0.50823
tatA b3836 twin argininte translocase protein Achromosome CDS4019968 270 + 0.455556
tatB b3838 sec-independent translocasechromosome CDS4020241 516 + 0.554264
tatC b3839 TatABCE protein translocation system subunitchromosome CDS4020759 777 + 0.516088
tatE b0627 twin arginine translocase protein Echromosome CDS658170 204 + 0.5
tolB b0740 translocation protein TolB precursorchromosome CDS776963 1293 + 0.531322
tolQ b0737 membrane spanning protein in TolA-TolQ-TolR complexchromosome CDS774376 693 + 0.50505
tolR b0738 membrane spanning protein in TolA-TolQ-TolR complexchromosome CDS775072 429 + 0.517483
yadK b0136 predicted fimbrial-like adhesin proteinchromosome CDS151003 597 - 0.413735
yadN b0141 predicted fimbrial-like adhesin proteinchromosome CDS156299 585 - 0.447863
yagZ b0293 hypothetical proteinchromosome CDS309308 588 - 0.528912
yajC b0407 preprotein translocase subunit YajCchromosome CDS426511 333 + 0.495495
ybbJ b0488 conserved inner membrane proteinchromosome CDS513625 456 - 0.574561
ybgD b0719 predicted fimbrial-like adhesin proteinchromosome CDS751452 567 - 0.467372
ybgP b0717 predicted assembly proteinchromosome CDS748202 729 - 0.477366
ycbR b0939 predicted periplasmic pilin chaperonechromosome CDS997713 702 + 0.450142
ycbS b0940 predicted outer membrane usher proteinchromosome CDS998439 2601 + 0.478662
ycbU b0942 predicted fimbrial-like adhesin proteinchromosome CDS1002112 543 + 0.471455
ycgV b1202 predicted adhesinchromosome CDS1252308 2868 - 0.497908
ychE b1242 predicted inner membrane proteinchromosome CDS1297821 648 + 0.478395
ydeK b1510 predicted lipoproteinchromosome CDS1592133 3978 - 0.493213
ydeR b1503 predicted fimbrial-like adhesin proteinchromosome CDS1585817 504 - 0.448413
ydeS b1504 predicted fimbrial-like adhesin proteinchromosome CDS1586333 531 - 0.448211
ydeT b1505 hypothetical proteinchromosome CDS1586877 1149 - 0.445605
ydhQ b1664 hypothetical proteinchromosome CDS1742895 1257 - 0.513922
yehB b2109 predicted outer membrane proteinchromosome CDS2186452 2481 - 0.455058
yehC b2110 predicted periplasmic pilin chaperonechromosome CDS2188948 720 - 0.393056
yehD b2111 predicted fimbrial-like adhesin proteinchromosome CDS2189702 543 - 0.405157
yejO b2190 predicted autotransporter outer membrane proteinchromosome CDS2284412 2511 - 0.483473
yfaL b2233 adhesinchromosome CDS2338439 3753 - 0.513722
yfcP b2333 predicted fimbrial-like adhesin proteinchromosome CDS2448073 540 - 0.487037
yfcS b2336 predicted periplasmic pilus chaperonechromosome CDS2449606 753 - 0.50996
yfcT b2337 predicted outer membrane export usher proteinchromosome CDS2450378 897 - 0.532887
yfcU b2338 predicted export usher proteinchromosome CDS2451287 1737 - 0.510075
yghD b2968 predicted secretion pathway M-type protein, membrane anchoredchromosome CDS3108612 537 - 0.532588
yghF b2970 predicted secretion pathway protein, C-type proteinchromosome CDS3110076 867 - 0.512111
ygiL b3043 predicted fimbrial-like adhesin proteinchromosome CDS3183436 552 + 0.436594
yhcA b3215 predicted periplasmic chaperone proteinchromosome CDS3360134 675 + 0.416296
yhcD b3216 predicted outer membrane proteinchromosome CDS3360829 2382 + 0.45508
yhgN b3434 predicted antibiotic transporterchromosome CDS3573094 594 + 0.5
yidC b3705 inner membrane protein translocase component YidCchromosome CDS3883099 1647 + 0.536733
yjcP b4080 predicted outer membrane factor of efflux pumpchromosome CDS4297587 1467 - 0.557601
yqiG b3046 predicted outer membrane usher proteinchromosome CDS3185422 2466 + 0.422141
yraH b3142 predicted fimbrial-like adhesin proteinchromosome CDS3285448 585 + 0.451282
yraI b3143 predicted periplasmic pilin chaperonechromosome CDS3286112 696 + 0.442529
yraJ b3144 predicted outer membrane proteinchromosome CDS3286836 2517 + 0.475963
yraK b3145 predicted fimbrial-like adhesin proteinchromosome CDS3289363 1092 + 0.478938
yrfC b3394 predicted fimbrial assembly proteinchromosome CDS3519455 540 - 0.553704
zraP b4002 Zn-binding periplasmic proteinchromosome CDS4199286 426 - 0.535211