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2024-05-18 08:50:56

Gene list

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COG category: Signal transduction mechanisms
Organism: Escherichia coli K12, K-12

Number of genes found: 188

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Escherichia coli K12, K-12
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
aceK b4016 bifunctional isocitrate dehydrogenase kinase/phosphatase proteinchromosome CDS4216619 1737 + 0.527922
aer b3072 fused signal transducer for aerotaxis sensory component/methyl accepting chemotaxis componentchromosome CDS3215578 1521 - 0.547666
apaH b0049 diadenosinetetraphosphatasechromosome CDS50380 843 - 0.557533
arcA b4401 DNA-binding response regulator in two-component regulatory system with ArcB or CpxAchromosome CDS4637613 717 - 0.51046
arcB b3210 hybrid sensory histidine kinase in two-component regulatory system with ArcAchromosome CDS3348711 2337 - 0.506205
argT b2310 lysine/arginine/ornithine transporter subunitchromosome CDS2425031 783 - 0.501916
artI b0863 arginine transporter subunitchromosome CDS901480 732 - 0.502732
artJ b0860 arginine transporter subunitchromosome CDS899067 732 - 0.448087
atoC b2220 fused response regulator of ato operon, in two-component system with AtoS: response regulator/sigma54 interaction proteinchromosome CDS2319888 1386 + 0.489899
atoS b2219 sensory histidine kinase in two-component regulatory system with AtoCchromosome CDS2318065 1827 + 0.485495
baeR b2079 DNA-binding response regulator in two-component regulatory system with BaeSchromosome CDS2162300 723 + 0.540802
baeS b2078 sensory histidine kinase in two-component regulatory system with BaeRchromosome CDS2160900 1404 + 0.537037
barA b2786 hybrid sensory histidine kinase, in two-component regulatory system with UvrYchromosome CDS2913079 2757 + 0.498368
basR b4113 DNA-binding response regulator in two-component regulatory system with BasSchromosome CDS4331305 669 - 0.532138
basS b4112 sensory histidine kinase in two-component regulatory system with BasRchromosome CDS4330204 1092 - 0.542125
bglJ b4366 DNA-binding transcriptional activatorchromosome CDS4602237 624 + 0.456731
bipA b3871 GTP-binding proteinchromosome CDS4056430 1824 + 0.534539
bolA b0435 regulator of penicillin binding proteins and beta lactamase transcription (morphogene)chromosome CDS453696 318 + 0.484277
cdaR b0162 DNA-binding transcriptional activatorchromosome CDS182463 1158 + 0.528497
cheA b1888 fused chemotactic sensory histidine kinase in two-component regulatory system with CheB and CheY: sensory histidine kinase/signal sensing proteinchromosome CDS1971384 1965 - 0.531298
cheB b1883 chemotaxis-specific methylesterasechromosome CDS1965476 1050 - 0.542857
cheR b1884 chemotaxis regulator, protein-glutamate methyltransferasechromosome CDS1966528 861 - 0.542393
cheW b1887 purine-binding chemotaxis proteinchromosome CDS1970860 504 - 0.519841
cheY b1882 chemotaxis regulator transmitting signal to flagellar motor componentchromosome CDS1965072 390 - 0.492308
cheZ b1881 chemotaxis regulator, protein phosphatase for CheYchromosome CDS1964417 645 - 0.534884
chpA b2782 toxin of the ChpA-ChpR toxin-antitoxin system, endoribonucleasechromosome CDS2908778 336 - 0.46131
chpB b4225 toxin of the ChpB-ChpS toxin-antitoxin systemchromosome CDS4446715 351 + 0.538462
chpR b2783 antitoxin of the ChpA-ChpR toxin-antitoxin systemchromosome CDS2909113 249 - 0.485944
chpS b4224 antitoxin of the ChpB-ChpS toxin-antitoxin systemchromosome CDS4446470 252 + 0.503968
citA b0619 sensory histidine kinase in two-component regulatory system with citBchromosome CDS651458 1659 + 0.500904
citB b0620 DNA-binding response regulator in two-component regulatory system with citAchromosome CDS653085 681 + 0.50514
cmtB b2934 predicted mannitol-specific enzyme IIA component of PTSchromosome CDS3076909 444 - 0.423423
cpxA b3911 two-component sensor proteinchromosome CDS4101625 1374 - 0.545852
cpxP b4484 periplasmic protein combats stresschromosome CDS4103843 501 + 0.500998
cpxR b3912 DNA-binding response regulator in two-component regulatory system with CpxAchromosome CDS4102995 699 - 0.513591
creB b4398 DNA-binding response regulator in two-component regulatory system with CreCchromosome CDS4634030 690 + 0.552174
creC b4399 sensory histidine kinase in two-component regulatory system with CreB or PhoB, regulator of the CreBC regulonchromosome CDS4634719 1425 + 0.538947
crp b3357 DNA-binding transcriptional dual regulatorchromosome CDS3484142 633 + 0.494471
csrA b2696 carbon storage regulatorchromosome CDS2816983 186 - 0.494624
cstA b0598 carbon starvation proteinchromosome CDS629117 2106 + 0.572175
cusR b0571 DNA-binding response regulator in two-component regulatory system with CusSchromosome CDS593983 684 - 0.538012
cusS b0570 sensory histidine kinase in two-component regulatory system with CusR, senses copper ionschromosome CDS592551 1443 - 0.520443
dcuR b4124 DNA-binding response regulator in two-component regulatory system with DcuSchromosome CDS4347338 720 - 0.493056
dcuS b4125 sensory histidine kinase in two-component regulatory system with DcuR, regulator of anaerobic fumarate respirationchromosome CDS4348054 1632 - 0.499387
dksA b0145 DNA-binding transcriptional regulator of rRNA transcription, DnaK suppressor proteinchromosome CDS160149 456 - 0.526316
dos b1489 cAMP phosphodiesterase, heme-regulatedchromosome CDS1561358 2400 - 0.502083
envZ b3404 osmolarity sensor proteinchromosome CDS3532538 1353 - 0.570584
etp b0982 phosphotyrosine-protein phosphatasechromosome CDS1043453 447 - 0.52349
evgA b2369 DNA-binding response regulator in two-component regulatory system with EvgSchromosome CDS2481777 615 + 0.4
evgS b2370 hybrid sensory histidine kinase in two-component regulatory system with EvgAchromosome CDS2482396 3594 + 0.40818
fecR b4292 KpLE2 phage-like element; transmembrane signal transducer for ferric citrate transportchromosome CDS4514787 954 - 0.590147
fhlA b2731 DNA-binding transcriptional activatorchromosome CDS2852360 2079 + 0.525734
fimZ b0535 predicted DNA-binding transcriptional regulatorchromosome CDS563071 633 - 0.366509
fliY b1920 cystine transporter subunitchromosome CDS1997609 801 - 0.498127
fnr b1334 DNA-binding transcriptional dual regulator, global regulator of anaerobic growthchromosome CDS1396798 753 - 0.5166
frvA b3900 predicted enzyme IIA component of PTSchromosome CDS4090400 447 - 0.501119
frvR b3897 predicted regulatorchromosome CDS4086130 1749 - 0.500286
gadE b3512 DNA-binding transcriptional activatorchromosome CDS3656389 528 + 0.329545
gatA b2094 galactitol-specific enzyme IIA component of PTSchromosome CDS2172619 453 - 0.426049
glnE b3053 fused deadenylyltransferase/adenylyltransferase for glutamine synthetasechromosome CDS3194823 2841 - 0.559662
glnG b3868 fused DNA-binding response regulator in two-component regulatory system with GlnL: response regulator/sigma54 interaction proteinchromosome CDS4051892 1410 - 0.569504
glnH b0811 glutamine ABC transporter periplasmic proteinchromosome CDS846481 747 - 0.487282
glnL b3869 sensory histidine kinase in two-component regulatory system with GlnGchromosome CDS4053313 1050 - 0.552381
gltI b0655 glutamate and aspartate transporter subunitchromosome CDS686062 909 - 0.487349
gmr b1285 modulator of Rnase II stabilitychromosome CDS1342781 1986 - 0.484894
hisJ b2309 histidine/lysine/arginine/ornithine transporter subunitchromosome CDS2424028 783 - 0.487867
htrG b3055 predicted signal transduction protein (SH3 domain)chromosome CDS3199229 621 + 0.52657
hyfR b2491 DNA-binding transcriptional activator, formate sensingchromosome CDS2609922 2013 + 0.52608
kdpD b0695 fused sensory histidine kinase in two-component regulatory system with KdpE: signal sensing proteinchromosome CDS720953 2685 - 0.575791
kdpE b0694 DNA-binding response regulator in two-component regulatory system with KdpDchromosome CDS720279 678 - 0.566372
lexA b4043 LexA repressorchromosome CDS4255138 609 + 0.518883
luxS b2687 S-ribosylhomocysteinasechromosome CDS2812240 516 - 0.515504
narL b1221 DNA-binding response regulator in two-component regulatory system with NarX (or NarQ)chromosome CDS1274402 651 - 0.517665
narP b2193 DNA-binding response regulator in two-component regulatory system with NarQ or NarXchromosome CDS2288522 648 + 0.524691
narQ b2469 sensory histidine kinase in two-component regulatory system with NarP (NarL)chromosome CDS2583753 1701 + 0.516167
narX b1222 sensory histidine kinase in two-component regulatory system with NarLchromosome CDS1275045 1797 - 0.533667
norR b2709 anaerobic nitric oxide reductase transcription regulatorchromosome CDS2828797 1515 - 0.568317
ompR b3405 osmolarity response regulatorchromosome CDS3533887 720 - 0.551389
phoB b0399 DNA-binding response regulator in two-component regulatory system with PhoR (or CreC)chromosome CDS416366 690 + 0.544928
phoH b1020 conserved protein with nucleoside triphosphate hydrolase domainchromosome CDS1084215 1065 + 0.522066
phoP b1130 DNA-binding response regulator in two-component regulatory system with PhoQchromosome CDS1188999 672 - 0.477679
phoQ b1129 sensory histidine kinase in two-compoent regulatory system with PhoPchromosome CDS1187539 1461 - 0.513347
phoR b0400 sensory histidine kinase in two-component regulatory system with PhoBchromosome CDS417113 1296 + 0.530093
pphA b1838 serine/threonine-specific protein phosphatase 1chromosome CDS1920337 657 - 0.47793
pphB b2734 serine/threonine-specific protein phosphatase 2chromosome CDS2857782 657 + 0.423135
proQ b1831 putative solute/DNA competence effectorchromosome CDS1912860 699 - 0.529328
prpR b0330 DNA-binding transcriptional activatorchromosome CDS346081 1587 - 0.551985
pspA b1304 regulatory protein for phage-shock-protein operonchromosome CDS1366103 669 + 0.493274
pspC b1306 DNA-binding transcriptional activatorchromosome CDS1367049 360 + 0.502778
pspF b1303 DNA-binding transcriptional activatorchromosome CDS1364959 978 - 0.517382
ptsN b3204 sugar-specific enzyme IIA component of PTSchromosome CDS3344600 492 + 0.522358
ptsP b2829 fused PTS enzyme: PEP-protein phosphotransferase (enzyme I)/GAF domain containing proteinchromosome CDS2964210 2247 - 0.538941
qseB b3025 DNA-binding response regulator in two-component regulatory system with QseCchromosome CDS3167850 660 + 0.516667
qseC b3026 sensory histidine kinase in two-component regulatory system with QseBchromosome CDS3168506 1350 + 0.53037
rcsA b1951 DNA-binding transcriptional activator, co-regulator with RcsBchromosome CDS2021992 624 + 0.38141
rcsB b2217 DNA-binding response regulator in two-component regulatory system with RcsC and YojNchromosome CDS2314199 651 + 0.477727
rcsC b2218 hybrid sensory kinase in two-component regulatory system with RcsB and YojNchromosome CDS2315049 2802 - 0.509993
rcsD b2216 phosphotransfer intermediate protein in two-component regulatory system with RcsBCchromosome CDS2311510 2673 + 0.493827
relA b2784 (p)ppGpp synthetase I/GTP pyrophosphokinasechromosome CDS2909439 2235 - 0.537808
rfaP b3630 kinase that phosphorylates core heptose of lipopolysaccharidechromosome CDS3803176 798 - 0.433584
rfaZ b3624 lipopolysaccharide core biosynthesis proteinchromosome CDS3797368 852 - 0.325117
rseA b2572 anti-sigma factorchromosome CDS2706776 651 - 0.522273
rseB b2571 periplasmic negative regulator of sigmaEchromosome CDS2705820 957 - 0.507837
rseC b2570 RseC protein involved in reduction of the SoxR iron-sulfur clusterchromosome CDS2705344 480 - 0.547917
rssB b1235 response regulator of RpoSchromosome CDS1289465 1014 + 0.486193
rstA b1608 DNA-binding response regulator in two-component regulatory system with RstBchromosome CDS1680174 729 + 0.491084
rstB b1609 sensory histidine kinase in two-component regulatory system with RstAchromosome CDS1680906 1302 + 0.506912
rtcR b3422 sigma 54-dependent transcriptional regulator of rtcBA expressionchromosome CDS3556290 1599 + 0.557849
rtn b2176 hypothetical proteinchromosome CDS2268748 1557 + 0.505459
sgcA b4302 KpLE2 phage-like element; predicted phosphotransferase enzyme IIA componentchromosome CDS4525572 432 - 0.543981
sixA b2340 phosphohistidine phosphatasechromosome CDS2454349 486 - 0.532922
spoT b3650 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolasechromosome CDS3820423 2109 + 0.537221
spy b1743 envelope stress induced periplasmic proteinchromosome CDS1823164 486 - 0.50823
tap b1885 methyl-accepting protein IVchromosome CDS1967407 1602 - 0.535581
tar b1886 methyl-accepting chemotaxis protein IIchromosome CDS1969054 1662 - 0.527677
torR b0995 DNA-binding response regulator in two-component regulatory system with TorSchromosome CDS1056485 693 - 0.52381
torS b0993 hybrid sensory histidine kinase in two-component regulatory system with TorRchromosome CDS1052657 2745 - 0.537705
trg b1421 methyl-accepting chemotaxis protein III, ribose and galactose sensor receptorchromosome CDS1490494 1641 + 0.512492
tsr b4355 methyl-accepting chemotaxis protein I, serine sensor receptorchromosome CDS4589680 1656 + 0.546498
uhpA b3669 DNA-binding response regulator in two-component regulatory system wtih UhpBchromosome CDS3848159 591 - 0.588832
uhpB b3668 sensory histidine kinase in two-component regulatory sytem with UhpAchromosome CDS3846657 1503 - 0.570858
ulaC b4195 L-ascorbate-specific enzyme IIA component of PTSchromosome CDS4419731 465 + 0.539785
umuD b1183 DNA polymerase V, subunit Dchromosome CDS1229990 420 + 0.480952
uspA b3495 universal stress global response regulatorchromosome CDS3638134 435 + 0.491954
uspE b1333 stress-induced proteinchromosome CDS1395696 951 - 0.505783
uspF b1376 stress-induced protein, ATP-binding proteinchromosome CDS1433209 435 - 0.485057
uspG b0607 universal stress protein UP12chromosome CDS640662 429 - 0.498834
uvrY b1914 response regulatorchromosome CDS1992727 657 - 0.497717
wzb b2061 protein-tyrosine phosphatasechromosome CDS2133679 444 - 0.545045
yahA b0315 predicted DNA-binding transcriptional regulatorchromosome CDS331595 1089 + 0.459137
yaiC b0385 predicted diguanylate cyclasechromosome CDS402927 1116 + 0.536738
ybeZ b0660 predicted protein with nucleoside triphosphate hydrolase domainchromosome CDS691561 1080 - 0.542593
ybiI b0803 hypothetical proteinchromosome CDS837413 267 - 0.520599
ycdT b1025 predicted diguanylate cyclasechromosome CDS1092099 1359 + 0.385578
ycgF b1163 predicted FAD-binding phosphodiesterasechromosome CDS1213487 1212 - 0.435644
ycgG b1168 conserved inner membrane proteinchromosome CDS1216551 1524 + 0.446194
ydaM b1341 predicted diguanylate cyclase, GGDEF domain signalling proteinchromosome CDS1404587 1233 - 0.476886
yddV b1490 predicted diguanylate cyclasechromosome CDS1563782 1044 - 0.431992
ydeH b1535 hypothetical proteinchromosome CDS1620984 891 - 0.448934
ydiV b1707 hypothetical proteinchromosome CDS1789331 714 - 0.422969
yeaG b1783 conserved protein with nucleoside triphosphate hydrolase domainchromosome CDS1864932 1935 + 0.501292
yeaI b1785 predicted diguanylate cyclasechromosome CDS1868409 1476 + 0.384824
yeaJ b1786 predicted diguanylate cyclasechromosome CDS1870065 1491 + 0.460094
yeaP b1794 predicted diguanylate cyclasechromosome CDS1875739 1026 + 0.480507
yebR b1832 hypothetical proteinchromosome CDS1913655 552 - 0.478261
yecG b1895 universal stress proteinchromosome CDS1977777 429 + 0.449883
yedQ b1956 predicted diguanylate cyclasechromosome CDS2024347 1695 - 0.513864
yedV b1968 predicted sensory kinase in two-component regulatory system with YedWchromosome CDS2034818 1359 - 0.396615
yedW b1969 predicted DNA-binding response regulator in two-component system with YedVchromosome CDS2036176 672 - 0.447917
yegE b2067 predicted diguanylate cyclase, GGDEF domain signalling proteinchromosome CDS2141290 3318 + 0.523508
yehT b2125 predicted response regulator in two-component system withYehUchromosome CDS2210265 720 - 0.493056
yehU b2126 predicted sensory kinase in two-component system with YehTchromosome CDS2210981 1686 - 0.505931
yeiL b2163 DNA-binding transcriptional activator of stationary phase nitrogen survivalchromosome CDS2253377 660 + 0.45
yfeA b2395 predicted diguanylate cyclasechromosome CDS2513665 2190 - 0.489954
yfgF b2503 predicted inner membrane proteinchromosome CDS2624717 2244 - 0.466132
yfhA b2554 predicted DNA-binding response regulator in two-component systemchromosome CDS2685491 1335 - 0.547566
yfhK b2556 predicted sensory kinase in two-component systemchromosome CDS2687693 1428 - 0.531513
yfiN b2604 predicted diguanylate cyclasechromosome CDS2740405 1227 + 0.483293
yfjI b2625 CP4-57 prophage; predicted proteinchromosome CDS2757007 1410 + 0.379433
ygeK b2855 predicted DNA-binding transcriptional regulatorchromosome CDS2992482 444 - 0.355856
ygeL b2856 hypothetical proteinchromosome CDS2992959 156 - 0.365385
ygeV b2869 predicted DNA-binding transcriptional regulatorchromosome CDS3002030 1779 - 0.45756
yhaC b3121 hypothetical proteinchromosome CDS3266437 1188 + 0.318182
yhdA b3252 conserved inner membrane proteinchromosome CDS3399414 1941 - 0.506955
yhdW b3268 predicted amino-acid transporter subunitchromosome CDS3417171 918 + 0.493464
yhjB b3520 predicted DNA-binding response regulator in two-component regulatory systemchromosome CDS3669315 603 - 0.477612
yhjH b3525 EAL domain containing protein involved in flagellar functionchromosome CDS3676443 768 - 0.527344
yhjK b3529 predicted diguanylate cyclasechromosome CDS3681653 1950 - 0.526154
yiiT b3923 stress-induced proteinchromosome CDS4111316 429 + 0.431235
yjcC b4061 predicted signal transduction protein (EAL domain containing protein)chromosome CDS4273494 1587 + 0.447385
yjfJ b4182 predicted transcriptional regulator effector proteinchromosome CDS4408576 699 + 0.513591
yjiY b4354 predicted inner membrane proteinchromosome CDS4587152 2151 - 0.560669
yjjQ b4365 predicted DNA-binding transcriptional regulatorchromosome CDS4601500 726 + 0.450413
ylaB b0457 conserved inner membrane proteinchromosome CDS476291 1551 - 0.480335
yliE b0833 conserved inner membrane proteinchromosome CDS872202 2349 + 0.415922
yliF b0834 predicted diguanylate cyclasechromosome CDS874558 1329 + 0.434913
ymfK b1145 e14 prophage; repressor protein phage e14chromosome CDS1201482 675 - 0.444444
ymfL b1147 e14 prophage; predicted DNA-binding transcriptional regulatorchromosome CDS1202479 570 + 0.494737
ynaA b1368 Rac prophage; predicted tail proteinchromosome CDS1424478 1029 + 0.468416
yneF b1522 predicted diguanylate cyclasechromosome CDS1608931 948 - 0.504219
yoaD b1815 predicted phosphodiesterasechromosome CDS1896451 1599 + 0.505316
ypdA b2380 predicted sensory kinase in two-component system with YpdBchromosome CDS2496693 1698 + 0.514134
ypdB b2381 predicted response regulator in two-component system withYpdAchromosome CDS2498405 735 + 0.47483
yqeH b2846 conserved protein with bipartite regulator domainchromosome CDS2985558 633 + 0.374408
yrbA b3190 predicted DNA-binding transcriptional regulatorchromosome CDS3334571 255 - 0.505882
zraP b4002 Zn-binding periplasmic proteinchromosome CDS4199286 426 - 0.535211
zraR b4004 fused DNA-binding response regulator in two-component regulatory system with ZraS: response regulator/sigma54 interaction proteinchromosome CDS4201343 1326 + 0.562594
zraS b4003 sensory histidine kinase in two-component regulatory system with ZraRchromosome CDS4199949 1398 + 0.542918