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2024-05-18 14:55:31

Gene list

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COG category: Posttranslational modification, protein turnover, chaperones
Organism: Escherichia coli APEC O1, APEC O1

Number of genes found: 116

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Escherichia coli APEC O1, APEC O1
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA APECO1_2294 putative pyruvate-formate lyase-activating enzymechromosome CDS4729806 918 - 0.466231
NA APECO1_2002 hypothetical proteinchromosome CDS5054688 864 - 0.560185
NA APECO1_3756 hypothetical proteinchromosome CDS3071118 672 - 0.520833
NA APECO1_3883 Qin-like prophage; predicted antitermination protein Qchromosome CDS2943425 753 - 0.471448
NA APECO1_3099 hypothetical proteinchromosome CDS3776196 405 - 0.516049
NA APECO1_3595 putative serine proteasechromosome CDS3272377 909 + 0.493949
NA APECO1_2026 putative protease/scaffold proteinchromosome CDS5028569 2178 + 0.517906
NA APECO1_3373 putative disulfide isomerasechromosome CDS3483209 672 + 0.485119
NA APECO1_3712 putative ATPases with chaperone activity, ATP-binding subunitchromosome CDS3123689 2646 + 0.603553
NA APECO1_3374 putative disulfide isomerasechromosome CDS3482526 669 + 0.446936
NA APECO1_2035 lambdoid prophage Qin antitermination protein Q-like proteinchromosome CDS5017174 795 + 0.483019
NA APECO1_387 cryptic prophage CP-933M antitermination protein Q-like proteinchromosome CDS1340531 822 + 0.502433
NA APECO1_3052 hypothetical proteinchromosome CDS3831269 576 + 0.527778
aec27 APECO1_1767 putative ATPase with chaperone activitychromosome CDS251007 2760 - 0.587681
ahpC APECO1_1444 alkyl hydroperoxide reductase, C22 subunitchromosome CDS624401 564 + 0.496454
ahpF APECO1_1443 alkyl hydroperoxide reductase subunit Fchromosome CDS625105 1596 + 0.524436
bcp APECO1_4077 thioredoxin-dependent thiol peroxidasechromosome CDS2722612 471 + 0.492569
btuE APECO1_785 vitamin B12 transport proteinchromosome CDS1810372 552 - 0.481884
cbpA APECO1_93 curved DNA-binding proteinchromosome CDS1050299 921 - 0.53203
ccmB APECO1_4359 heme exporter protein Bchromosome CDS2405932 663 - 0.559578
ccmC APECO1_4360 heme exporter protein Cchromosome CDS2405153 738 - 0.552846
ccmE APECO1_4361 periplasmic heme chaperonechromosome CDS2404471 480 - 0.539583
ccmF APECO1_4362 heme lyase, CcmF subunitchromosome CDS2402531 1944 - 0.569959
ccmG APECO1_4363 periplasmic thioredoxin of cytochrome c-type biogenesischromosome CDS2401977 558 - 0.553763
ccmH APECO1_4364 heme lyase, CcmH subunitchromosome CDS2400928 1053 - 0.54321
clpB APECO1_3938 heat shock proteinchromosome CDS2890825 2586 - 0.513148
clpP APECO1_1574 ATP-dependent proteolytic subunit of ClpA-ClpP serine proteasechromosome CDS472393 624 + 0.501603
clpX APECO1_1573 ATP-dependent Clp protease ATP-binding subunit ClpXchromosome CDS473142 1275 + 0.519216
degQ APECO1_3210 periplasmic serine endoprotease DegQchromosome CDS3663322 1368 + 0.522661
degS APECO1_3209 periplasmic serine endoprotease DegSchromosome CDS3664779 1068 + 0.523408
djlA APECO1_1927 Dna-J like membrane chaperone proteinchromosome CDS60450 909 + 0.518152
dnaJ APECO1_1964 chaperone with DnaK; heat shock proteinchromosome CDS14170 1161 + 0.544358
dnaK APECO1_1965 molecular chaperone DnaKchromosome CDS12195 1917 + 0.511215
dsbA APECO1_2601 DsbA, periplasmic protein disulfide isomerase Ichromosome CDS4361589 627 + 0.480064
dsbB APECO1_297 disulfide bond formation protein Bchromosome CDS1243659 537 - 0.523277
dsbC APECO1_3634 protein disulfide isomerase IIchromosome CDS3233873 711 - 0.481013
dsbD APECO1_2252 thiol:disulfide interchange protein precursorchromosome CDS4771181 1779 - 0.532884
dsbG APECO1_1445 thiol:disulfide interchange protein dsbG precursorchromosome CDS623283 807 - 0.460967
fdhE APECO1_2574 formate dehydrogenase accessory protein FdhEchromosome CDS4393159 930 - 0.547312
fklB APECO1_2179 FKBP-type 22KD peptidyl-prolyl cis-trans isomerase (a rotamase)chromosome CDS4845269 780 + 0.530769
fkpA APECO1_3106 FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase)chromosome CDS3767389 813 - 0.483395
fliS APECO1_966 flagellar protein FliSchromosome CDS2010536 411 + 0.481752
glnD APECO1_1820 PII uridylyl-transferasechromosome CDS191020 2673 - 0.536102
glnE APECO1_3361 glutamate-ammonia-ligase adenylyltransferasechromosome CDS3497509 2913 - 0.555441
groEL APECO1_2246 chaperonin GroELchromosome CDS4778861 1647 + 0.530662
grxB APECO1_146 GrxBchromosome CDS1105763 648 - 0.489198
hflB APECO1_3254 putative ATP-dependent zinc metalloproteasechromosome CDS3617731 1935 - 0.532817
hflC APECO1_2216 protease specific for phage lambda cII repressorchromosome CDS4810836 1005 + 0.523383
hflK APECO1_2217 HflK protein, regulator of FtsH protease, subunit of HflK-HflC complexchromosome CDS4809574 1260 + 0.562698
hscA APECO1_3999 chaperone protein HscAchromosome CDS2816478 1905 - 0.573753
hscB APECO1_3998 co-chaperone HscBchromosome CDS2818345 516 - 0.517442
hslJ APECO1_553 heat shock protein HslJchromosome CDS1527808 423 - 0.477541
hslO APECO1_3063 Hsp33-like chaperoninchromosome CDS3815213 885 + 0.525424
hslU APECO1_2539 ATP-dependent protease ATP-binding subunitchromosome CDS4429428 1332 - 0.522523
hslV APECO1_2538 ATP-dependent hslVU protease peptidase subunit hslVchromosome CDS4430769 531 - 0.525424
htpG APECO1_1542 heat shock protein 90chromosome CDS510849 1875 + 0.528
htpX APECO1_884 heat shock proteinchromosome CDS1919610 882 - 0.531746
htrA APECO1_1824 periplasmic serine protease Do, heat shock protein HtrAchromosome CDS186681 1425 + 0.537544
hyaE APECO1_80 protein involved in processing of HyaA and HyaB proteinschromosome CDS1032643 399 + 0.548872
hypB APECO1_3798 GTP hydrolase involved in nickel liganding into hydrogenaseschromosome CDS3025251 873 + 0.558992
hypC APECO1_3797 protein required for maturation of hydrogenases 1 and 3chromosome CDS3026114 273 + 0.542125
hypD APECO1_3796 protein required for maturation of hydrogenaseschromosome CDS3026386 1122 + 0.542781
hypE APECO1_3795 carbamoyl phosphate phosphatase, hydrogenase 3 maturation proteinchromosome CDS3027546 969 + 0.574819
hypF APECO1_3814 hydrogenase maturation protein HypFchromosome CDS3008829 2253 - 0.57834
ibpA APECO1_2770 heat shock proteinchromosome CDS4161373 414 - 0.471014
ibpB APECO1_2771 heat shock proteinchromosome CDS4160833 435 - 0.485057
lon APECO1_1572 DNA-binding ATP-dependent protease Lachromosome CDS474559 2400 + 0.52375
msrA APECO1_2169 methionine sulfoxide reductase Achromosome CDS4856810 666 - 0.54955
nrdG APECO1_2155 anaerobic ribonucleoside-triphosphate reductase activating proteinchromosome CDS4874693 465 - 0.516129
nrfE APECO1_2381 formate-dependent nitrite reductase subunit nrfEchromosome CDS4633208 1659 + 0.56962
osmC APECO1_617 osmotically inducible protein OsmCchromosome CDS1612454 432 + 0.5
pcm APECO1_3780 protein-L-isoaspartate O-methyltransferasechromosome CDS3045655 627 - 0.53429
pflA APECO1_1190 pyruvate formate lyase-activating enzyme 1chromosome CDS918973 798 - 0.492481
pflC APECO1_2515 pyruvate formate-lyase 2 activating enzymechromosome CDS4462520 948 + 0.551688
ppiA APECO1_3093 peptidyl-prolyl cis-trans isomerase A (rotamase A)chromosome CDS3782507 573 - 0.511344
ppiC APECO1_2696 peptidyl-prolyl cis-trans isomerase C (rotamase C)chromosome CDS4253100 282 - 0.510638
ppiD APECO1_1570 peptidyl-prolyl isomerasechromosome CDS477631 1872 + 0.521368
ptrA APECO1_3684 protease III precursorchromosome CDS3163527 2889 - 0.50848
radA APECO1_1992 DNA repair protein RadAchromosome CDS5065871 1383 + 0.573391
slpA APECO1_1955 putative FKBX-type 16KD peptidyl-prolyl cis-trans isomerasechromosome CDS27317 450 + 0.546667
slyD APECO1_3105 FKBP-type peptidyl-prolyl cis-trans isomerase SlyDchromosome CDS3768689 591 - 0.551607
smpB APECO1_3915 trans-translation proteinchromosome CDS2914010 483 + 0.515528
sohB APECO1_432 possible protease SohBchromosome CDS1388193 1050 + 0.504762
sppA APECO1_835 protease IVchromosome CDS1862310 1857 + 0.51804
sspA APECO1_3215 stringent starvation protein Achromosome CDS3659360 639 - 0.536776
sufB APECO1_760 component of SufBCD complexchromosome CDS1779508 1527 - 0.517354
surA APECO1_1929 survival proteinchromosome CDS56595 1287 - 0.539239
tig APECO1_1575 trigger factorchromosome CDS470849 1290 + 0.513178
tpx APECO1_477 thiol peroxidasechromosome CDS1445476 507 - 0.514793
trxB APECO1_1201 Thioredoxin reductasechromosome CDS902888 1071 - 0.517274
trxC APECO1_3950 thioredoxin 2chromosome CDS2872638 420 + 0.497619
ybbK APECO1_1520 putative protease YbbKchromosome CDS534438 918 - 0.526144
ybbN APECO1_1517 putative thioredoxin domain-containing proteinchromosome CDS537007 891 - 0.553311
ybiY APECO1_1269 putative pyruvate formate lyase activating enzymechromosome CDS825428 900 - 0.527778
ycaL APECO1_21 YcaLchromosome CDS963735 774 + 0.488372
ycbZ APECO1_60 YcbZchromosome CDS1012826 1587 - 0.522369
ydhO APECO1_735 hypothetical proteinchromosome CDS1750754 348 - 0.522988
yeaA APECO1_846 peptide methionine sulfoxide reductasechromosome CDS1875489 444 - 0.47973
yeaZ APECO1_865 O-sialoglycoprotein endopeptidasechromosome CDS1898486 696 - 0.556035
yegD APECO1_1160 hypothetical chaperone proteinchromosome CDS2235302 1353 + 0.55728
yegQ APECO1_1176 hypothetical proteinchromosome CDS2257723 1362 + 0.543319
yegW APECO1_4446 putative hydrolasechromosome CDS2293629 1005 + 0.550249
yfcF APECO1_4263 putative glutathione S-transferasechromosome CDS2524672 645 - 0.52093
yfcG APECO1_4262 putative S-transferasechromosome CDS2525452 648 + 0.510802
yfgC APECO1_4075 putative peptidase YfgCchromosome CDS2724455 1464 + 0.535519
yggG APECO1_3593 putative metalloprotease YggGchromosome CDS3275648 885 + 0.520904
yggX APECO1_3539 hypothetical proteinchromosome CDS3298744 276 + 0.471014
yghU APECO1_3432 putative glutathione S-transferasechromosome CDS3422399 915 + 0.53224
ygjD APECO1_3350 O-sialoglycoprotein endopeptidasechromosome CDS3510246 1014 - 0.564103
yhbU APECO1_3272 putative collagenasechromosome CDS3594220 996 + 0.569277
yhbV APECO1_3271 putative proteasechromosome CDS3595206 897 + 0.562988
yibF APECO1_2861 predicted glutathione S-transferasechromosome CDS4058062 609 - 0.525452
yifB APECO1_2704 putative bifunctional enzyme and transcriptional regulatorchromosome CDS4242114 1551 - 0.506125
yliJ APECO1_1255 predicted glutathione S-transferasechromosome CDS842670 633 - 0.518167
yqeB APECO1_3651 putative synthasechromosome CDS3208375 1626 - 0.5246
yqjG APECO1_3318 putative glutathione S-transferasechromosome CDS3550461 987 + 0.516717