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2024-05-18 15:09:55

Gene list

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COG category: NOT ANALYZED
Organism: Escherichia coli APEC O1, APEC O1

Number of genes found: 243

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Escherichia coli APEC O1, APEC O1
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA APECO1_515 hypothetical proteinchromosome CDS1484895 477 + 0.503145
NA APECO1_4214 hypothetical proteinchromosome CDS2577393 537 + 0.450652
NA APECO1_6004 tail assembly proteinchromosome CDS2058656 744 - 0.591398
NA APECO1_2124 hypothetical proteinchromosome CDS4913953 1917 + 0.329682
NA APECO1_1724 hypothetical proteinchromosome CDS296225 384 + 0.401042
NA APECO1_5061 tRNA-Glychromosome tRNA3003522 75 + 0.546667
NA APECO1_1642 putative transferasechromosome CDS399265 711 - 0.459916
NA APECO1_5057 tRNA-Serchromosome tRNA2988636 90 + 0.422222
NA APECO1_5053 tRNA-Asnchromosome tRNA2943442 76 - 0.368421
NA APECO1_5012 tRNA-Tyrchromosome tRNA584889 85 - 0.588235
NA APECO1_5044 tRNA-Argchromosome tRNA2318714 77 - 0.532468
NA APECO1_r09 23S ribosomal RNAchromosome rRNA3714583 2909 - 0.531454
NA APECO1_5069 tRNA-Argchromosome tRNA3734928 77 - 0.506494
NA APECO1_443 putative DEOR-type transcriptional regulatorchromosome CDS1402442 750 - 0.486667
NA APECO1_1719 hypothetical proteinchromosome CDS301550 363 + 0.402204
NA APECO1_399 putative capsid assembly protein of prophagechromosome CDS1352080 1506 + 0.606242
NA APECO1_3354 putative transcriptional regulator YgiPchromosome CDS3506040 987 - 0.489362
NA APECO1_1725 hypothetical proteinchromosome CDS295178 315 - 0.463492
NA APECO1_r18 23S ribosomal RNAchromosome rRNA4490375 2918 + 0.533585
NA APECO1_r11 16S ribosomal RNAchromosome rRNA4235473 1554 + 0.542471
NA APECO1_5060 tRNA-Thrchromosome tRNA3003443 76 + 0.578947
NA APECO1_1387 putative inner membrane proteinchromosome CDS688214 1242 + 0.545894
NA APECO1_345 putative transposasechromosome CDS1299112 1200 - 0.469167
NA APECO1_r21 23S ribosomal RNAchromosome rRNA4530563 2913 + 0.531754
NA APECO1_2018 putative minor tail proteinchromosome CDS5036988 330 + 0.527273
NA APECO1_1101 hypothetical proteinchromosome CDS2164631 924 - 0.569264
NA APECO1_417 unknown protein encoded by prophage CP-933Xchromosome CDS1371810 669 - 0.411061
NA APECO1_1662 putative permease component of transport systemchromosome CDS374209 987 + 0.514691
NA APECO1_r02 23S ribosomal RNAchromosome rRNA230474 2914 + 0.530885
NA APECO1_r05 23S ribosomal RNAchromosome rRNA2885478 2907 - 0.532164
NA APECO1_4213 hypothetical proteinchromosome CDS2577978 450 - 0.377778
NA APECO1_1031 putative inner membrane proteinchromosome CDS2075039 714 - 0.417367
NA APECO1_r07 5S ribosomal RNAchromosome rRNA3714123 123 - 0.609756
NA APECO1_1489 hypothetical proteinchromosome CDS566547 687 + 0.475983
NA APECO1_5070 tRNA-Metchromosome tRNA3735102 76 - 0.592105
NA APECO1_5067 tRNA-Glychromosome tRNA3594780 75 - 0.68
NA APECO1_231 hypothetical proteinchromosome CDS1188371 285 + 0.435088
NA APECO1_1664 putative ATP-binding component of transport system, probable substrate ribosechromosome CDS371794 1485 + 0.514478
NA APECO1_519 hypothetical proteinchromosome CDS1488756 252 + 0.488095
NA APECO1_450 acriflavine resistance protein Bchromosome CDS1412198 3108 + 0.521236
NA APECO1_5013 tRNA-Thrchromosome tRNA584982 76 - 0.605263
NA APECO1_5068 tRNA-Thrchromosome tRNA3594858 76 - 0.526316
NA APECO1_r03 5S ribosomal RNAchromosome rRNA233482 124 + 0.629032
NA APECO1_3884 hypothetical proteinchromosome CDS2942904 336 - 0.330357
NA APECO1_597 hypothetical proteinchromosome CDS1588417 792 + 0.325758
NA APECO1_1085 hypothetical proteinchromosome CDS2150106 324 + 0.490741
NA APECO1_4469 putative major capsid proteinchromosome CDS932545 1074 + 0.550279
NA APECO1_5011 tRNA-Glychromosome tRNA584698 75 - 0.466667
NA APECO1_2626 putative aldolasechromosome CDS4333280 525 + 0.548571
NA APECO1_5031 tRNA-Metchromosome tRNA1561812 76 - 0.578947
NA APECO1_r15 23S ribosomal RNAchromosome rRNA4355855 2909 + 0.530767
NA APECO1_511 hypothetical bacteriophage proteinchromosome CDS1481483 600 + 0.496667
NA APECO1_5038 tRNA-Argchromosome tRNA2086094 77 + 0.428571
NA APECO1_526 hypothetical proteinchromosome CDS1496270 396 + 0.474747
NA APECO1_r08 5S ribosomal RNAchromosome rRNA3714368 124 - 0.620968
NA APECO1_r06 16S ribosomal RNAchromosome rRNA2888826 1558 - 0.54172
NA APECO1_1019 hypothetical proteinchromosome CDS2065515 450 - 0.526667
NA APECO1_r17 16S ribosomal RNAchromosome rRNA4488381 1566 + 0.545977
NA APECO1_5058 tRNA-Metchromosome tRNA3003287 76 + 0.526316
NA APECO1_5095 tRNA-Gluchromosome tRNA4851823 77 - 0.519481
NA APECO1_3714 putative outer membrane proteinchromosome CDS3121335 1614 + 0.615861
NA APECO1_1029 putative phage lysozymechromosome CDS2073144 534 - 0.522472
NA APECO1_1530 hypothetical proteinchromosome CDS525161 303 + 0.419142
NA APECO1_541 hypothetical proteinchromosome CDS1512916 291 + 0.525773
NA APECO1_1680 hypothetical proteinchromosome CDS352811 282 + 0.414894
NA APECO1_r01 16S ribosomal RNAchromosome rRNA228500 1554 + 0.541184
NA APECO1_3495 hypothetical proteinchromosome CDS3349670 789 + 0.372624
NA APECO1_5009 tRNA-Gluchromosome tRNA551657 76 - 0.552632
NA APECO1_r12 23S ribosomal RNAchromosome rRNA4237369 2906 + 0.532691
NA APECO1_r04 5S ribosomal RNAchromosome rRNA2885264 124 - 0.620968
NA APECO1_5059 tRNA-Lyschromosome tRNA3003364 77 + 0.506494
NA APECO1_r20 16S ribosomal RNAchromosome rRNA4528665 1548 + 0.54199
NA APECO1_2416 putative transcriptional regulator, LacI familychromosome CDS4590133 1035 + 0.502415
NA APECO1_5010 tRNA-Thrchromosome tRNA584616 76 - 0.5
NA APECO1_r22 5S ribosomal RNAchromosome rRNA4533566 124 + 0.620968
NA APECO1_1083 hypothetical proteinchromosome CDS2148049 408 - 0.52451
NA APECO1_1172 hypothetical proteinchromosome CDS2253187 309 - 0.430421
NA APECO1_r14 16S ribosomal RNAchromosome rRNA4353875 1555 + 0.544051
NA APECO1_5043 tRNA-Alachromosome tRNA2189558 76 + 0.526316
NA APECO1_5003 tRNA-Leuchromosome tRNA81862 87 + 0.517241
NA APECO1_5042 tRNA-Ilechromosome tRNA2189439 77 + 0.441558
NA APECO1_1619 hypothetical proteinchromosome CDS422744 324 - 0.475309
NA APECO1_2143 carbamate kinasechromosome CDS4890495 969 - 0.520124
NA APECO1_r19 5S ribosomal RNAchromosome rRNA4493383 124 + 0.620968
NA APECO1_r13 5S ribosomal RNAchromosome rRNA4240365 124 + 0.620968
NA APECO1_418 hypothetical proteinchromosome CDS1372624 351 - 0.481481
NA APECO1_r16 5S ribosomal RNAchromosome rRNA4358854 124 + 0.620968
NA APECO1_1064 hypothetical proteinchromosome CDS2121671 807 + 0.436183
NA APECO1_1407 hypothetical proteinchromosome CDS663720 1878 + 0.494675
NA APECO1_r10 16S ribosomal RNAchromosome rRNA3717926 1554 - 0.543758
adk APECO1_1541 adenylate kinasechromosome CDS512847 702 + 0.514245
aec30 APECO1_1770 hypothetical proteinchromosome CDS245273 3528 - 0.575397
alaT APECO1_5015 tRNA-Alachromosome tRNA726358 76 - 0.618421
alaU APECO1_5027 tRNA-Alachromosome tRNA1360451 76 + 0.5
alaV APECO1_5094 tRNA-Alachromosome tRNA4851736 75 - 0.546667
alaW APECO1_5049 tRNA-Alachromosome tRNA2432309 76 + 0.276316
alaX APECO1_5050 tRNA-Alachromosome tRNA2432424 76 + 0.434211
apt APECO1_1546 adenine phosphoribosyltransferasechromosome CDS507108 585 + 0.535043
argU APECO1_5090 tRNA-Argchromosome tRNA4511322 77 - 0.623377
argV APECO1_5039 tRNA-Argchromosome tRNA2086235 77 + 0.480519
argW APECO1_5051 tRNA-Argchromosome tRNA2512937 75 - 0.426667
argX APECO1_5020 tRNA-Argchromosome tRNA806796 77 - 0.597403
argY APECO1_5040 tRNA-Argchromosome tRNA2086375 77 + 0.532468
argZ APECO1_5041 tRNA-Argchromosome tRNA2086515 77 + 0.545455
aslA APECO1_1962 putative arylsulfatasechromosome CDS16950 1524 + 0.449475
asnU APECO1_5055 tRNA-Asnchromosome tRNA2947678 76 + 0.539474
asnV APECO1_5054 tRNA-Asnchromosome tRNA2945851 76 - 0.552632
asnW APECO1_5056 tRNA-Asnchromosome tRNA2987569 76 - 0.473684
aspT APECO1_5022 tRNA-Aspchromosome tRNA841425 77 - 0.441558
aspU APECO1_5093 tRNA-Aspchromosome tRNA4848295 77 - 0.571429
aspV APECO1_5092 tRNA-Aspchromosome tRNA4840072 77 - 0.519481
atoS APECO1_4340 sensor protein AtoSchromosome CDS2429036 1827 + 0.488232
avtA APECO1_2878 valine--pyruvate transaminasechromosome CDS4038263 1254 + 0.522329
bcsB APECO1_2916 regulator of cellulose synthase, cyclic di-GMP binding protein BcsBchromosome CDS3989681 2340 - 0.549145
bglA APECO1_3626 6-phospho-beta-glucosidase BglAchromosome CDS3239304 1440 + 0.513889
cdsA APECO1_1812 phosphatidate cytidylyltransferasechromosome CDS200484 828 + 0.504831
clpA APECO1_1213 ATP-dependent clp protease ATP-binding subunit ClpAchromosome CDS885644 2283 + 0.529128
cusA APECO1_1473 copper/silver efflux system, membrane componentchromosome CDS585766 3144 + 0.55598
cydC APECO1_1203 Transport ATP-binding protein cydCchromosome CDS899277 1722 - 0.535424
cyoA APECO1_1579 cytochrome o ubiquinol oxidase subunit IIchromosome CDS466371 957 - 0.506792
cyoD APECO1_1582 cytochrome O ubiquinol oxidase protein CyoDchromosome CDS463425 411 - 0.493917
dcp APECO1_659 putative oxidoreductase YdfGchromosome CDS1668546 2046 - 0.502444
emrB APECO1_3837 multidrug resistance protein Bchromosome CDS2984380 1539 + 0.562703
emrE APECO1_975 multidrug efflux proteinchromosome CDS2019346 498 - 0.439759
erfK APECO1_6023 conserved protein with NAD(P)-binding Rossmann-fold domainchromosome CDS2134815 936 - 0.498932
fepE APECO1_1462 ferric enterobactin transport protein FepEchromosome CDS603839 1254 + 0.446571
flgB APECO1_155 cell-proximal portion of basal-body rod FlgBchromosome CDS1113374 417 + 0.527578
fliF APECO1_977 Flagellar M-ring proteinchromosome CDS2020552 1002 + 0.543912
glnU APECO1_5085 tRNA-Glnchromosome tRNA4408712 75 + 0.453333
glnV APECO1_5088 tRNA-Glnchromosome tRNA4409036 75 + 0.653333
glnW APECO1_5086 tRNA-Glnchromosome tRNA4408821 75 + 0.626667
glnX APECO1_5089 tRNA-Glnchromosome tRNA4409148 75 + 0.506667
gltT APECO1_5014 tRNA-Gluchromosome tRNA591850 76 - 0.539474
gltU APECO1_5023 tRNA-Gluchromosome tRNA844863 76 - 0.526316
glyU APECO1_5033 tRNA-Glychromosome tRNA1883202 74 + 0.405405
glyV APECO1_5007 tRNA-Glychromosome tRNA282054 76 - 0.552632
glyW APECO1_5062 tRNA-Glychromosome tRNA3081111 76 + 0.552632
glyX APECO1_5006 tRNA-Glychromosome tRNA281942 76 - 0.605263
glyY APECO1_5005 tRNA-Glychromosome tRNA281831 76 - 0.552632
gspJ APECO1_3464 putative type II secretion protein GspJchromosome CDS3381836 606 - 0.564356
hha APECO1_1553 Hha proteinchromosome CDS495820 420 - 0.392857
hisR APECO1_5019 tRNA-Hischromosome tRNA806662 76 - 0.447368
htrE APECO1_1846 outer membrane usher protein HtrE precursorchromosome CDS158851 2589 - 0.447663
ileT APECO1_5016 tRNA-Ilechromosome tRNA726476 77 - 0.506494
ileU APECO1_5026 tRNA-Ilechromosome tRNA1360332 77 + 0.519481
insB APECO1_2257 IS1 InsB proteinchromosome CDS4766398 504 - 0.549603
intD APECO1_1484 prophage DLP12 integrasechromosome CDS571040 408 - 0.477941
intD APECO1_1485 prophage DLP12 integrasechromosome CDS570712 381 - 0.480315
kpsD APECO1_3480 polysialic acid transport protein KpsD precursorchromosome CDS3364321 1677 + 0.519976
leuP APECO1_5002 tRNA-Leuchromosome tRNA81741 87 + 0.482759
leuQ APECO1_5001 tRNA-Leuchromosome tRNA81625 88 + 0.579545
leuT APECO1_5018 tRNA-Leuchromosome tRNA806555 87 - 0.275862
leuU APECO1_5029 tRNA-Leuchromosome tRNA1463313 87 + 0.597701
leuW APECO1_5084 tRNA-Leuchromosome tRNA4408604 85 + 0.505882
leuX APECO1_5004 tRNA-Leuchromosome tRNA168882 85 - 0.541176
leuZ APECO1_5064 tRNA-Leuchromosome tRNA3081327 87 + 0.54023
lysQ APECO1_5076 tRNA-Lyschromosome tRNA4335453 76 - 0.460526
lysT APECO1_5082 tRNA-Lyschromosome tRNA4336081 76 - 0.434211
lysW APECO1_5080 tRNA-Lyschromosome tRNA4335892 76 - 0.539474
lysY APECO1_5078 tRNA-Lyschromosome tRNA4335686 76 - 0.447368
lysZ APECO1_5045 tRNA-Lyschromosome tRNA2429213 76 - 0.539474
lysZ APECO1_5077 tRNA-Lyschromosome tRNA4335562 76 - 0.381579
mdlA APECO1_1563 multidrug resistance-like ATP-binding protein MdlAchromosome CDS484599 1773 + 0.530739
metT APECO1_5083 tRNA-Metchromosome tRNA4408517 77 + 0.584416
metU APECO1_5087 tRNA-Metchromosome tRNA4408911 77 + 0.571429
metV APECO1_5034 tRNA-Metchromosome tRNA1961668 77 - 0.649351
metW APECO1_5035 tRNA-Metchromosome tRNA1961778 77 - 0.467532
metY APECO1_5030 tRNA-Metchromosome tRNA1467177 77 + 0.545455
metZ APECO1_5036 tRNA-Metchromosome tRNA1961888 77 - 0.506494
moaA APECO1_1308 molybdenum cofactor biosynthesis protein Achromosome CDS781513 1065 + 0.531455
murC APECO1_1895 UDP-N-acetylmuramate--L-alanine ligasechromosome CDS103188 1476 + 0.541328
ndh APECO1_190 NADH dehydrogenasechromosome CDS1148459 1281 + 0.530835
neuE APECO1_3475 polysialic acid biosynthesis protein NeuEchromosome CDS3371380 1176 - 0.267857
pheU APECO1_5008 tRNA-Phechromosome tRNA311563 76 + 0.539474
pheV APECO1_5032 tRNA-Phechromosome tRNA1773109 76 - 0.513158
prlC APECO1_2955 oligopeptidase Achromosome CDS3937728 2043 - 0.555556
proC APECO1_1622 pyrroline-5-carboxylate reductasechromosome CDS420660 810 - 0.546914
proK APECO1_5025 tRNA-Prochromosome tRNA1069456 77 + 0.506494
proL APECO1_5052 tRNA-Prochromosome tRNA2683971 77 - 0.493506
proM APECO1_5017 tRNA-Prochromosome tRNA806436 77 - 0.441558
prpR APECO1_1658 DNA-binding transcriptional activatorchromosome CDS378409 1587 - 0.556396
prrA APECO1_308 putative outer membrane receptor, probably TonB dependentchromosome CDS1255974 1971 - 0.500254
rbsA APECO1_3186 putative ribose transport ATP-binding protein RbsAchromosome CDS3692672 1500 - 0.453333
rcsC APECO1_4341 hybrid sensory kinase in two-component regulatory system with RcsB and RojNchromosome CDS2426020 2802 - 0.501071
recT APECO1_499 recombinational DNA repair proteinchromosome CDS1469055 867 - 0.471742
rhaA APECO1_2565 L-rhamnose isomerasechromosome CDS4403699 1260 - 0.551587
rhaD APECO1_2566 rhamnulose-1-phosphate aldolasechromosome CDS4402598 825 - 0.551515
rmlA APECO1_1129 glucose-1-phosphate thymidylyltransferasechromosome CDS2197302 879 - 0.432309
rnb APECO1_445 exoribonuclease IIchromosome CDS1405822 1935 - 0.531266
rnd APECO1_862 Ribonuclease Dchromosome CDS1894778 1116 - 0.543011
rnfC APECO1_712 electron transport complex protein RnfCchromosome CDS1728405 2127 + 0.54725
sbcB APECO1_1109 exonuclease Ichromosome CDS2171519 1476 + 0.493902
selC APECO1_5024 tRNA-Secchromosome tRNA944853 88 + 0.318182
serS APECO1_5073 tRNA-Serchromosome tRNA3998194 88 + 0.5
serT APECO1_5074 tRNA-Serchromosome tRNA4050200 88 + 0.522727
serV APECO1_5037 tRNA-Serchromosome tRNA2085998 93 + 0.451613
serW APECO1_5075 tRNA-Serchromosome tRNA4184849 88 + 0.431818
speD APECO1_1865 S-adenosylmethionine decarboxylasechromosome CDS140950 552 - 0.472826
thiG APECO1_2483 thiazole biosynthesis protein ThiGchromosome CDS4512403 1029 - 0.584062
thiQ APECO1_1916 thiamine transport ATP-binding protein ThiQchromosome CDS75876 699 - 0.565093
thrV APECO1_5028 tRNA-Thrchromosome tRNA1363843 76 + 0.578947
thrW APECO1_5091 tRNA-Thrchromosome tRNA4786906 76 - 0.486842
tonB APECO1_368 TonB proteinchromosome CDS1323352 732 + 0.535519
topB APECO1_832 DNA topoisomerase IIIchromosome CDS1858478 2010 - 0.547264
torC APECO1_89 cytochrome c-type protein TorCchromosome CDS1045324 1173 + 0.514067
trpT APECO1_5021 tRNA-Trpchromosome tRNA841341 76 - 0.473684
tsx APECO1_1599 nucleoside-specific channel-forming protein Tsxchromosome CDS446963 885 - 0.508475
tyrT APECO1_5071 tRNA-Tyrchromosome tRNA3777257 85 + 0.6
tyrV APECO1_5072 tRNA-Tyrchromosome tRNA3777375 85 + 0.529412
uraA APECO1_4072 uracil permease transporterchromosome CDS2727232 1290 - 0.52093
uvrY APECO1_956 response regulatorchromosome CDS1999676 621 - 0.500805
valT APECO1_5081 tRNA-Valchromosome tRNA4335970 76 - 0.552632
valU APECO1_5048 tRNA-Valchromosome tRNA2429535 76 - 0.473684
valV APECO1_5066 tRNA-Valchromosome tRNA3314704 77 - 0.506494
valW APECO1_5065 tRNA-Valchromosome tRNA3314623 77 - 0.480519
valX APECO1_5046 tRNA-Valchromosome tRNA2429293 76 - 0.5
valY APECO1_5047 tRNA-Valchromosome tRNA2429415 76 - 0.552632
valZ APECO1_5079 tRNA-Valchromosome tRNA4335765 76 - 0.473684
wzb APECO1_1151 tyrosine phosphatasechromosome CDS2222809 444 - 0.545045
yacC APECO1_1863 hypothetical proteinchromosome CDS142732 387 - 0.490956
ybaE APECO1_1566 hypothetical proteinchromosome CDS481340 1701 - 0.528513
ybjE APECO1_1220 hypothetical proteinchromosome CDS876518 945 - 0.478307
ycgC APECO1_315 putative phosphoenolpyruvate kinase (PTS system EI component in bacteria)chromosome CDS1264753 1422 - 0.501406
yciM APECO1_440 hypothetical proteinchromosome CDS1399405 1170 + 0.513675
ydcP APECO1_580 putative protease YdcP precursorchromosome CDS1567181 2004 + 0.506487
ydfG APECO1_6592 putative oxidoreductase YdfGchromosome CDS1670728 747 + 0.511379
ydhS APECO1_746 conserved hypothetical protein with FAD/NAD(P)-binding domainchromosome CDS1764117 951 + 0.457413
yeeV APECO1_1103 toxin of the YeeV-YeeU toxin-antitoxin systemchromosome CDS2166381 264 + 0.530303
yegH APECO1_1153 hypothetical proteinchromosome CDS2225017 1623 + 0.523105
yeiQ APECO1_4382 putative dehydrogenase, NAD-dependentchromosome CDS2378983 1467 + 0.514656
yeiU APECO1_4380 undecaprenyl pyrophosphate phosphatasechromosome CDS2381592 714 + 0.436975
yfaS APECO1_4332 hypothetical proteinchromosome CDS2438791 4605 - 0.535939
yfeK APECO1_4126 hypothetical proteinchromosome CDS2669694 333 + 0.498498
yffH APECO1_4090 putative NUDIX hydrolasechromosome CDS2705066 576 - 0.482639
ygfJ APECO1_3649 hypothetical proteinchromosome CDS3210922 579 + 0.431779
yggM APECO1_3565 hypothetical proteinchromosome CDS3293209 972 - 0.436214
ygiF APECO1_3360 putative adenylate cyclasechromosome CDS3500372 1302 - 0.546851
yidZ APECO1_2749 hypothetical proteinchromosome CDS4187130 960 + 0.520833
ykgD APECO1_1689 putative DNA-binding transcriptional regulatorchromosome CDS341784 855 + 0.508772
ynaA APECO1_532 Rac prophage; predicted tail proteinchromosome CDS1499789 3234 + 0.449289
ynbC APECO1_561 putative methylasechromosome CDS1542957 1758 + 0.515927
ynhG APECO1_755 hypothetical proteinchromosome CDS1774707 1005 - 0.526368
yraM APECO1_3283 hypothetical proteinchromosome CDS3586136 2037 + 0.542955