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2024-05-18 12:38:04

Gene list

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COG category: Cell wall/membrane biogenesis
Organism: Escherichia coli APEC O1, APEC O1

Number of genes found: 204

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Escherichia coli APEC O1, APEC O1
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA APECO1_2643 putative sugar isomerasechromosome CDS4314532 591 + 0.49577
NA APECO1_3278 hypothetical proteinchromosome CDS3590946 681 - 0.550661
NA APECO1_3692 phosphosugar isomerasechromosome CDS3150820 597 - 0.410385
NA APECO1_2389 putative LrgB family regulator of murein hydrolasechromosome CDS4624130 690 + 0.533333
NA APECO1_635 hypothetical proteinchromosome CDS1642499 783 - 0.467433
NA APECO1_2944 hypothetical proteinchromosome CDS3952346 624 + 0.5625
NA APECO1_332 2-dehydro-3-deoxyphosphooctonate aldolasechromosome CDS1281890 855 + 0.51345
NA APECO1_449 acriflavine resistance protein A precursorchromosome CDS1411044 1155 + 0.509091
NA APECO1_1810 putative outer membrane proteinchromosome CDS202705 2433 + 0.50185
NA APECO1_1809 hypothetical proteinchromosome CDS205259 486 + 0.5
NA APECO1_1066 hypothetical proteinchromosome CDS2124696 1053 - 0.387464
NA APECO1_906 hypothetical proteinchromosome CDS1948226 1323 - 0.525321
NA APECO1_410 putative tail fiber component K of prophagechromosome CDS1362005 744 + 0.596774
NA APECO1_2993 hypothetical proteinchromosome CDS3898055 885 + 0.424859
NA APECO1_451 putative outer membrane channel proteinchromosome CDS1415309 1374 + 0.537846
NA APECO1_3444 hypothetical proteinchromosome CDS3408594 1125 + 0.546667
NA APECO1_1171 hypothetical proteinchromosome CDS2252521 615 - 0.450406
NA APECO1_1389 dihydrodipicolinate synthasechromosome CDS686002 888 - 0.519144
NA APECO1_263 putative tail fiber component K of prophagechromosome CDS1212895 744 + 0.599462
NA APECO1_534 putative tail fiber component K of prophagechromosome CDS1504056 744 + 0.599462
acrE APECO1_3174 acriflavine resistance protein Echromosome CDS3704734 1158 + 0.525907
agaS APECO1_3291 tagatose-6-phosphate ketose/aldose isomerasechromosome CDS3580097 1155 + 0.568831
alr APECO1_2414 alanine racemase 1chromosome CDS4592708 1080 + 0.557407
amiA APECO1_4113 putative N-acetylmuramoyl-L-alanine amidase AmiA precursorchromosome CDS2681323 870 + 0.512644
amiB APECO1_2222 N-acetylmuramoyl-L-alanine amidase AmiB precursorchromosome CDS4803601 1338 + 0.54559
amiC APECO1_3688 N-acetylmuramoyl-L-alanine amidasechromosome CDS3155288 1344 - 0.529762
ampC APECO1_2239 beta-lactamase precursorchromosome CDS4785334 1263 - 0.496437
ampD APECO1_1879 N-acetyl-anhydromuranmyl-L-alanine amidasechromosome CDS121038 552 + 0.54529
ampH APECO1_1632 penicillin-binding protein AmpHchromosome CDS410955 1131 - 0.552608
asmA APECO1_1155 AsmA suppressor of OmpF assembly mutantschromosome CDS2227385 1854 - 0.525351
bcsA APECO1_29152 putative ATPases involved in chromosome partitioningchromosome CDS3992031 2667 - 0.550056
betT APECO1_1676 high-affinity choline transport proteinchromosome CDS357021 2034 + 0.550147
blc APECO1_2240 outer membrane lipoprotein Blc precursorchromosome CDS4784712 534 - 0.533708
caiT APECO1_1941 L-carnitine/gamma-butyrobetaine antiporterchromosome CDS43031 1515 - 0.523432
cfa APECO1_741 cyclopropane fatty acyl phospholipid synthasechromosome CDS1758398 1149 + 0.482158
cld APECO1_1124 regulator of length of O-antigen component of lipopolysaccharide chainschromosome CDS2186123 1017 - 0.457227
cniT APECO1_2099 putative carnitine transporter CniTchromosome CDS4944492 1542 + 0.444228
cpsB APECO1_1139 Mannose-1-phosphate guanylyltransferasechromosome CDS2210128 1437 - 0.555324
csgG APECO1_122 assembly /transport component in curli productionchromosome CDS1083207 834 - 0.502398
cusC APECO1_1476 probable outer membrane lipoprotein CusC precursorchromosome CDS582777 1383 + 0.515546
cutF APECO1_1795 copper homeostasis protein CutF precursorchromosome CDS220044 711 + 0.520394
dacA APECO1_1423 D-alanyl-D-alanine carboxypeptidase, fraction A; penicillin-binding protein 5chromosome CDS646201 1212 - 0.49835
dacB APECO1_3250 D-alanyl-D-alanine carboxypeptidasechromosome CDS3621693 1434 + 0.528591
dacC APECO1_1254 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a)chromosome CDS843522 1224 + 0.513072
dacD APECO1_1108 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6b)chromosome CDS2170192 1044 - 0.5
dadX APECO1_302 alanine racemase 2, catabolicchromosome CDS1250150 1071 + 0.57423
dapA APECO1_4079 dihydrodipicolinate synthasechromosome CDS2721016 879 - 0.518771
ddlA APECO1_1627 D-alanine-D-alanine ligase Achromosome CDS415654 1095 - 0.511416
ddlB APECO1_1894 D-alanine--D-alanine ligase Bchromosome CDS104656 921 + 0.513572
dgkA APECO1_2427 diacylglycerol kinase DgkAchromosome CDS4577858 369 + 0.506775
ftsQ APECO1_1893 cell division protein; ingrowth of wall at septumchromosome CDS105578 831 + 0.530686
galE APECO1_1329 UDP-galactose-4-epimerasechromosome CDS755827 1059 - 0.535411
galF APECO1_1132 putative UTP--glucose-1-phosphate uridylyltransferasechromosome CDS2200595 906 - 0.520971
galU APECO1_350 glucose-1-phosphate uridylyltransferasechromosome CDS1304779 909 + 0.467547
gidB APECO1_2723 glucose-inhibited division protein Bchromosome CDS4216722 624 - 0.490385
glmS APECO1_2732 D-fructose-6-phosphate amidotransferasechromosome CDS4205504 1830 - 0.53224
glmU APECO1_2731 bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferasechromosome CDS4207494 1371 - 0.52954
gmd APECO1_1143 GDP-mannose 4,6-dehydratasechromosome CDS2214237 1122 - 0.540998
hemM APECO1_325 outer membrane lipoprotein LolB precursorchromosome CDS1276602 690 - 0.491304
imp APECO1_1928 organic solvent tolerance protein precursorchromosome CDS57934 2355 - 0.517622
kdsB APECO1_30 KdsBchromosome CDS974324 747 + 0.526104
kpsC APECO1_3478 capsule polysaccharide export protein KpsCchromosome CDS3366744 2028 + 0.519724
kpsE APECO1_3481 polysialic acid transport protein KpsE precursorchromosome CDS3363149 1149 + 0.494343
kpsF APECO1_3482 polysialic acid capsule synthesis protein KpsFchromosome CDS3362058 1020 + 0.489216
kpsM APECO1_3468 polysialic acid transport protein KpsMchromosome CDS3377315 777 - 0.433719
kpsS APECO1_3477 polysialic acid capsule synthesis protein KpsSchromosome CDS3368806 1206 + 0.453566
kpsU APECO1_3479 3-deoxy-manno-octulosonate cytidylyltransferase KpsUchromosome CDS3366007 741 + 0.547908
lgt APECO1_3677 prolipoprotein diacylglyceryl transferasechromosome CDS3172694 876 - 0.525114
lolA APECO1_1198 Outer-membrane lipoprotein carrier protein precursorchromosome CDS909225 615 + 0.505691
lpxA APECO1_1806 UDP-N-acetylglucosamine acetyltransferasechromosome CDS207337 789 + 0.533587
lpxB APECO1_1805 lipid-A-disaccharide synthasechromosome CDS208125 1149 + 0.537859
lpxC APECO1_1890 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylasechromosome CDS108980 918 + 0.509804
lpxD APECO1_1808 UDP-3-O-(3-hydroxymyristoyl)-glucosamine N-acyltransferasechromosome CDS205748 1026 + 0.521442
lspA APECO1_1956 signal peptidase IIchromosome CDS26715 495 + 0.523232
lytB APECO1_1954 4-hydroxy-3-methylbut-2-enyl diphosphate reductasechromosome CDS27768 951 + 0.55205
mdoB APECO1_2065 phosphoglycerol transferase Ichromosome CDS4991147 2253 - 0.515313
mdtE APECO1_2935 multidrug resistance efflux transporterchromosome CDS3958806 1158 + 0.544905
mepA APECO1_4236 penicillin-insensitive murein endopeptidasechromosome CDS2550663 825 - 0.557576
mltA APECO1_3719 membrane-bound lytic murein transglycosylase A precursorchromosome CDS3114931 1299 - 0.507313
mltB APECO1_3825 membrane-bound lytic murein transglycosylase B precursorchromosome CDS2998049 1134 - 0.547619
mltC APECO1_3538 membrane-bound lytic murein transglycosylase Cchromosome CDS3299081 1083 + 0.518929
mltD APECO1_1779 putative membrane-bound lytic murein transglycosylase Dchromosome CDS237543 1359 - 0.523915
mltE APECO1_305 murein transglycosylase Echromosome CDS1254008 726 + 0.508264
modH APECO1_134 periplasmic glucans biosynthesis protein MdoHchromosome CDS1093187 2574 + 0.548174
mpl APECO1_2159 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligasechromosome CDS4870550 1374 + 0.551674
mraW APECO1_1904 S-adenosyl-methyltransferasechromosome CDS92418 1041 + 0.548511
mraY APECO1_1899 phospho-N-acetylmuramoyl-pentapeptide-transferasechromosome CDS98425 1083 + 0.532779
mrcB APECO1_1836 penicillin-binding protein 1bchromosome CDS170650 2535 + 0.548323
mreC APECO1_3195 cell wall structural complex MreBCD transmembrane component MreCchromosome CDS3681172 1104 - 0.557971
mreD APECO1_3196 cell wall structural complex MreBCD transmembrane component MreDchromosome CDS3680684 489 - 0.511247
mscL APECO1_3156 large-conductance mechanosensitive channelchromosome CDS3728746 414 + 0.442029
mscS APECO1_3609 mechanosensitive channelchromosome CDS3259299 861 - 0.505226
mtgA APECO1_3227 monofunctional biosynthetic peptidoglycan transglycosylasechromosome CDS3641671 729 - 0.521262
murA APECO1_3245 UDP-N-glucosamine 1-carboxyvinyltransferasechromosome CDS3627825 1260 - 0.534127
murB APECO1_2495 MurB, UDP-N-acetylenolpyruvoylglucosamine reductasechromosome CDS4493638 1029 + 0.469388
murD APECO1_1898 UDP-N-acetylmuramoyl-L-alanyl-D-glutamatesynthetasechromosome CDS99510 1317 + 0.55429
murE APECO1_1901 UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligasechromosome CDS95589 1488 + 0.568548
murF APECO1_1900 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligasechromosome CDS97073 1359 + 0.540839
murG APECO1_1896 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferasechromosome CDS102067 1068 + 0.558989
murI APECO1_2496 glutamate racemase MurIchromosome CDS4487138 870 + 0.516092
nanA APECO1_3218 N-acetylneuraminate lyasechromosome CDS3656943 894 - 0.526846
neuA APECO1_3472 acylneuraminate cytidylyltransferasechromosome CDS3373693 1257 - 0.309467
neuB APECO1_3471 sialic acid synthase NeuBchromosome CDS3374949 1041 - 0.323727
neuC APECO1_3473 polysialic acid biosynthesis proteinchromosome CDS3372521 1176 - 0.320578
nlpB APECO1_4080 lipoproteinchromosome CDS2719965 1035 - 0.553623
nlpC APECO1_783 putative lipoproteinchromosome CDS1809081 465 - 0.494624
nlpD APECO1_3781 putative outer membrane lipoproteinchromosome CDS3044376 1140 - 0.524561
nmpC APECO1_241 outer membrane porin protein NmpC precursorchromosome CDS1193929 1143 - 0.427822
ompA APECO1_62 OmpAchromosome CDS1015302 1113 - 0.521114
ompC APECO1_4344 outer membrane porin protein Cchromosome CDS2420651 1092 - 0.515568
ompF APECO1_41 OmpFchromosome CDS989194 1089 - 0.477502
ompN APECO1_1001 Outer membrane protein N precursorchromosome CDS2041345 1146 + 0.430192
ompN APECO1_550 outer membrane pore protein N, non-specificchromosome CDS1522248 1134 - 0.465608
ompW APECO1_372 outer membrane protein W precursorchromosome CDS1326217 717 + 0.485356
ompX APECO1_1277 outer membrane protein X precursorchromosome CDS814718 522 + 0.511494
pal APECO1_1340 peptidoglycan-associated lipoprotein precursorchromosome CDS744395 522 + 0.51341
pbpA APECO1_1420 penicillin-binding protein 2chromosome CDS649767 1902 - 0.526814
pbpC APECO1_4005 penicillin-binding protein 1Cchromosome CDS2804850 2313 - 0.567229
pbpG APECO1_4415 D-alanyl-D-alanine endopeptidasechromosome CDS2337915 942 - 0.507431
phoE APECO1_1728 outer membrane pore protein E precursorchromosome CDS291217 1062 - 0.448211
pldA APECO1_2655 outer membrane phospholipase Achromosome CDS4301880 870 + 0.52069
prc APECO1_885 tail-specific protease precursorchromosome CDS1920683 2049 - 0.50366
rafI APECO1_2829 lipopolysaccharide 1,3-galactosyltransferasechromosome CDS4095450 1017 - 0.381514
rfaC APECO1_2835 ADP-heptose:LPS heptosyl transferase Ichromosome CDS4089268 981 + 0.511723
rfaD APECO1_2837 ADP-L-glycero-D-mannoheptose-6-epimerase, NAD(P)-bindingchromosome CDS4087276 933 + 0.503751
rfaE APECO1_3362 fused heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferasechromosome CDS3496028 1434 - 0.556485
rfaF APECO1_2836 ADP-heptose:LPS heptosyltransferase IIchromosome CDS4088218 1047 + 0.536772
rfaG APECO1_2827 lipopolysaccharide core biosynthesis glucosyltransferase Ichromosome CDS4097272 1125 - 0.481778
rfaJ APECO1_2830 lipopolysaccharide 1,2-glucosyltransferasechromosome CDS4094438 996 - 0.35241
rfaJ APECO1_2832 UDP-galactose:(galactosyl) LPS alpha1,2-galactosyltransferasechromosome CDS4092682 1029 - 0.370262
rfaQ APECO1_2826 lipopolysaccharide core biosynthesis glycosyl transferase RfaQchromosome CDS4098393 1059 - 0.465534
rfbB APECO1_1131 RfbB, subunit of dTDP-glucose 4,6-dehydratasechromosome CDS2199137 1086 - 0.434622
rfe APECO1_2690 UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferasechromosome CDS4260707 1104 + 0.492754
rffA APECO1_2684 TDP-4-oxo-6-deoxy-D-glucose transaminasechromosome CDS4267937 1131 + 0.546419
rffD APECO1_2688 UDP-N-acetyl glucosamine-2-epimerasechromosome CDS4264051 1263 + 0.536025
rffE APECO1_26882 UDP-N-acetyl glucosamine-2-epimerasechromosome CDS4262882 1173 + 0.526002
rffG APECO1_2687 dTDP-glucose 4,6-dehydratasechromosome CDS4265313 1068 + 0.541198
rffH APECO1_2686 lipopolysaccharide biosynthesis protein RffHchromosome CDS4266399 882 + 0.547619
rlpA APECO1_1422 rare lipoprotein A precursorchromosome CDS647552 1338 - 0.561285
rlpB APECO1_1414 minor lipoproteinchromosome CDS655056 582 - 0.524055
rmlC APECO1_1128 putative dTDP-4-dehydrorhamnose 3,5-epimerasechromosome CDS2196749 549 - 0.391621
rmlD APECO1_1130 dTDP-6-deoxy-D-glucose-3,5 epimerasechromosome CDS2198238 900 - 0.463333
rspA APECO1_664 starvation sensing protein RspAchromosome CDS1675657 1248 - 0.510417
slp APECO1_2951 outer membrane protein induced after carbon starvationchromosome CDS3944486 600 + 0.446667
slt APECO1_1987 lytic murein transglycosylase, solublechromosome CDS5071146 1938 + 0.54386
slyB APECO1_724 outer membrane lipoprotein SlyB precursorchromosome CDS1741265 468 + 0.504274
spr APECO1_4379 putative peptidase, outer membrane lipoproteinchromosome CDS2382717 567 + 0.469136
tia APECO1_3530 Tia invasion determinantchromosome CDS3312302 756 - 0.462963
tolA APECO1_1342 membrane spanning protein TolAchromosome CDS741685 1251 + 0.52518
tolC APECO1_3378 TolC outer membrane-associated proteinchromosome CDS3476755 1488 + 0.513441
tonB APECO1_245 truncated TonB-like membrane protein encoded within prophagechromosome CDS1197522 381 + 0.459318
tsx APECO1_2530 nucleoside-specific channel-forming protein Tsx precursorchromosome CDS4441373 861 - 0.391405
ugd APECO1_1125 UDP-glucose 6-dehydrogenasechromosome CDS2187249 1167 - 0.439589
vacJ APECO1_4220 putative lipoprotein VacJchromosome CDS2567930 756 - 0.509259
waaL APECO1_2834 lipid A-core, surface polymer ligasechromosome CDS4090318 1254 - 0.338915
waaV APECO1_2833 beta-1,3-glucosyltransferasechromosome CDS4091617 984 - 0.325203
wcaA APECO1_1149 Putative colanic acid biosynthesis glycosyl transferasechromosome CDS2219676 840 - 0.516667
wcaC APECO1_1147 putative glycosyltransferasechromosome CDS2217971 1218 - 0.535304
wcaE APECO1_1145 Putative colanic acid biosynthesis glycosyl transferasechromosome CDS2215949 747 - 0.476573
wcaG APECO1_1142 GDP-fucose synthetasechromosome CDS2213269 966 - 0.555901
wcaI APECO1_1140 Putative colanic acid biosynthesis glycosyl transferasechromosome CDS2211567 1224 - 0.549837
wcaJ APECO1_1137 putative colanic acid biosynthsis UDP-glucose lipid carrier transferasechromosome CDS2207207 1395 - 0.544086
wcaL APECO1_1134 putative colanic acid biosynthesis glycosyl transferasechromosome CDS2203068 1221 - 0.538084
wecG APECO1_2680 putative UDP-N-acetyl-D-mannosaminuronic acid transferase WecGchromosome CDS4272747 741 + 0.535762
wza APECO1_1152 putative polysaccharide export proteinchromosome CDS2223258 1140 - 0.535965
wzzE APECO1_2689 entobacterial Common Antigen (ECA) polysaccharide chain length modulation protein WzzEchromosome CDS4261822 1047 + 0.522445
yaeF APECO1_1794 putative synthase of the YaeF/YiiX familychromosome CDS220910 825 - 0.475152
yaeL APECO1_1811 zinc metallopeptidasechromosome CDS201323 1353 + 0.507761
yafL APECO1_1742 putative lipoproteinchromosome CDS278585 759 + 0.521739
yaiP APECO1_1641 putative glucosyltransferasechromosome CDS399824 1197 - 0.500418
yajG APECO1_1577 conserved hypothetical lipoprotein YajG precursorchromosome CDS469305 681 - 0.503671
ybdG APECO1_1471 hypothetical proteinchromosome CDS590469 1248 - 0.477564
ybiO APECO1_1283 putative membrane protein YbiOchromosome CDS807673 2226 - 0.531447
ybjR APECO1_1226 putative N-acetylmuramoyl-L-alanine amidase YbjRchromosome CDS867473 831 + 0.566787
ybjS APECO1_1225 hypothetical proteinchromosome CDS869412 1494 - 0.546185
ycdQ APECO1_113 predicted glycosyl transferasechromosome CDS1072092 1326 - 0.469834
ycfN APECO1_187 hypothetical proteinchromosome CDS1145611 825 + 0.533333
ydcK APECO1_574 hypothetical proteinchromosome CDS1561658 981 - 0.477064
ydiY APECO1_7922 hypothetical proteinchromosome CDS1821267 759 - 0.494071
yeaF APECO1_850 MltA-interacting protein precursorchromosome CDS1879202 747 - 0.52075
yeaY APECO1_864 conserved predicted lipoproteinchromosome CDS1897865 582 - 0.542955
yeeZ APECO1_1113 predicted epimerase, with NAD(P)-binding Rossmann-fold domainchromosome CDS2177115 825 - 0.510303
yehZ APECO1_4418 putative transporter subunit: periplasmic-binding component of ABC superfamilychromosome CDS2332561 918 - 0.537037
yfbE APECO1_4308 hypothetical proteinchromosome CDS2474605 1173 + 0.517477
yfbF APECO1_4307 putative glycosyltransferase YfbFchromosome CDS2475781 969 + 0.506708
yfbG APECO1_4306 putative nucleoside-diphosphate-sugar epimerasechromosome CDS2476749 1983 + 0.509834
yfbI APECO1_4304 putative 4-amino-4-deoxy-L-arabinose transferasechromosome CDS2479618 1653 + 0.507562
yfhD APECO1_3973 putative transglycosylasechromosome CDS2850019 1419 + 0.504581
yfiB APECO1_3928 putative outer membrane lipoproteinchromosome CDS2902848 483 + 0.511387
ygeA APECO1_3666 hypothetical proteinchromosome CDS3187476 693 - 0.506494
ygeR APECO1_3660 putative lipoporteinchromosome CDS3195078 714 - 0.508403
yiaD APECO1_2896 hypothetical proteinchromosome CDS4016597 660 + 0.569697
yibD APECO1_2840 predicted glycosyl transferase YibDchromosome CDS4083558 1035 - 0.452174
yjcP APECO1_2371 putative multidrug efflux system componentchromosome CDS4646229 1467 - 0.559646
yjeP APECO1_2230 predicted mechanosensitive channelchromosome CDS4793583 3324 - 0.556859
ynaI APECO1_484 hypothetical protein YnaIchromosome CDS1452727 1032 - 0.43314
yncA APECO1_589 predicted acyltransferase with acyl-CoA N-acyltransferase domainchromosome CDS1578325 519 - 0.531792
yohG APECO1_4411 putative channel/filament proteinchromosome CDS2341290 1518 - 0.542819
yohK APECO1_4408 putative seritonin transporterchromosome CDS2345005 696 + 0.533046
ypfG APECO1_4091 hypothetical proteinchromosome CDS2703897 1044 - 0.543103
yqhH APECO1_3411 putative outer membrane lipoproteinchromosome CDS3442127 258 + 0.484496
ytfB APECO1_2180 putative cell envelope opacity-associated proteinchromosome CDS4844572 675 - 0.552593
ytfG APECO1_2175 hypothetical proteinchromosome CDS4849657 861 - 0.535424
ytfM APECO1_2168 putative outer membrane protein and surface antigenchromosome CDS4857654 1734 + 0.538062