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2024-05-18 05:57:31

Gene list

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COG category: Replication, recombination and repair
Organism: Yersinia enterocolitica subsp. enterocolitica 8081, 8081

Number of genes found: 191

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Yersinia enterocolitica subsp. enterocolitica 8081, 8081
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA YE1642 putative deoxyribonucleasechromosome CDS1846761 810 + 0.488889
NA YE2632 hypothetical proteinchromosome CDS2848733 1764 - 0.315193
NA YE3728 hypothetical proteinchromosome CDS4070730 354 + 0.502825
NA YEP0092 transposase for insertion sequence element IS4pYVe8081 CDS63019 1338 - 0.560538
NA YE1527 putative ATPase proteinchromosome CDS1710309 1344 + 0.502976
NA YE1423 putative DEAD box helicase family proteinchromosome CDS1595855 1758 - 0.518202
NA YE1684 putative prophage encoded two-component system histidine kinasechromosome CDS1879424 2379 - 0.308953
NA YE3249 insertion element IS1664 proteinchromosome CDS3544855 516 + 0.507752
NA YE3450 phage integrasechromosome CDS3762254 984 - 0.420732
NA YE3064 putative transposase for IS1667chromosome CDS3330944 1020 + 0.473529
NA YE1811 transposase for insertion element IS1222chromosome CDS2001724 750 + 0.56
NA YE1870 putative transposase for IS1667chromosome CDS2052949 1020 - 0.47451
NA YE0305 putative transposase for insertion element IS1669chromosome CDS360724 798 + 0.512531
NA YE3831 insertion element IS1664 proteinchromosome CDS4175669 525 - 0.504762
NA YE3877 hypothetical protein located on insertion sequence element IS1666chromosome CDS4231120 858 - 0.517483
NA YEP0069 transposasepYVe8081 CDS49605 1203 + 0.481297
NA YE3250 putative transposase for IS1664 elementchromosome CDS3545406 819 + 0.465201
NA YE3429 hypothetical proteinchromosome CDS3743402 423 + 0.536643
NA YE0647 putative DNA-damage-inducible proteinchromosome CDS746972 204 + 0.426471
NA YE1586 putative helicase IVchromosome CDS1787680 2055 + 0.482725
NA YE1571 hypothetical proteinchromosome CDS1768726 2121 + 0.505422
NA YE2355 exodeoxyribonucleasechromosome CDS2546079 666 + 0.487988
NA YE1134 putative transposase for IS1667chromosome CDS1274153 1020 - 0.470588
NA YE1161 hypothetical proteinchromosome CDS1299739 576 + 0.4375
NA YE3129 hypothetical proteinchromosome CDS3402575 423 - 0.444444
NA YE0453 hypothetical proteinchromosome CDS527869 294 - 0.506803
NA YE0748 transposase for insertion sequence element IS1328chromosome CDS874288 1005 + 0.517413
NA YE1928 DinJ-like proteinchromosome CDS2105365 261 + 0.43295
NA YE0048 putative DNA ligasechromosome CDS58977 1698 + 0.464075
NA YE1163 putative transposase for IS1667chromosome CDS1303231 1020 - 0.473529
NA YE1736 putative transposase for insertion element IS1669chromosome CDS1934671 798 + 0.512531
NA YE1791 transposase for insertion sequence element IS1328chromosome CDS1985629 1005 - 0.516418
NA YE3292 putative transposase for insertion element IS1669chromosome CDS3594117 798 - 0.512531
NA YE3170 putative transposase for insertion element IS1669chromosome CDS3440946 798 + 0.512531
NA YEP0073 putative resolvase/recombinasepYVe8081 CDS52049 735 - 0.553742
NA YE1562 transposase for insertion sequence element IS1660chromosome CDS1756478 1335 - 0.559551
NA YEP0003 putative transposasepYVe8081 CDS1674 435 + 0.51954
NA YE0978 putative integrase/recombinasechromosome CDS1100515 1359 + 0.337748
NA YE0998 DNA repair protein RecNchromosome CDS1118560 1680 - 0.470833
NA YE0084 bifunctional regulatory protein/DNA repair proteinchromosome CDS92988 999 + 0.525526
NA YE3664 putative MutT-family proteinchromosome CDS3995983 633 - 0.49763
NA YE0090 transposase for insertion sequence element IS1660chromosome CDS99139 1335 - 0.559551
NA YE3407 transposase for IS1668chromosome CDS3719323 1470 - 0.529252
NA YE0568 putative metalloenzymechromosome CDS652890 798 + 0.494987
NA YE2378 putative DEAD box family helicasechromosome CDS2565165 1827 - 0.525452
NA YE1359 putative transposase for IS1667chromosome CDS1514983 1020 + 0.47549
NA YE1326 hypothetical proteinchromosome CDS1477421 549 + 0.499089
NA YE3886 putative DNA-binding proteinchromosome CDS4247414 537 - 0.472998
NA YE1130 hypothetical proteinchromosome CDS1269637 720 + 0.4875
NA YE1723 hypothetical proteinchromosome CDS1922690 447 - 0.465324
NA YE3325 putative transposase for IS1667chromosome CDS3633371 1020 + 0.470588
NA YE2301 phage-related membrane proteinchromosome CDS2512327 399 - 0.433584
NA YE3878 putative transposase for insertion sequence element IS1666chromosome CDS4231986 300 - 0.46
NA YE1906 hypothetical proteinchromosome CDS2089809 237 + 0.50211
NA YE1590 insertion element IS1664 proteinchromosome CDS1791980 516 + 0.515504
NA YE1170 putative integrase/recombinase proteinchromosome CDS1308992 1119 + 0.470956
NA YE1203 putative transposase for insertion element IS1669chromosome CDS1342839 798 - 0.512531
NA YE3980 putative hydrolasechromosome CDS4327043 558 - 0.487455
NA YE3830 putative transposase for IS1664 elementchromosome CDS4174815 819 - 0.465201
NA YE1529 putative transposase for IS1667chromosome CDS1713540 1020 - 0.469608
NA YE2529 putative glycosidasechromosome CDS2726956 603 + 0.466003
NA YE3320 hypothetical proteinchromosome CDS3629256 528 - 0.494318
NA YE3412 transposase for IS1668chromosome CDS3724618 1470 - 0.530612
NA YE0599 transposase for insertion sequence element IS1660chromosome CDS685300 1338 - 0.559791
NA YE3525 hypothetical proteinchromosome CDS3836292 258 + 0.453488
NA YE4117 putative phage integrasechromosome CDS4502800 1215 - 0.463374
NA YE0977 putative integrase/recombinasechromosome CDS1099313 1206 + 0.333333
NA YE1780 mutT-family proteinchromosome CDS1975689 588 - 0.515306
NA YE0224 hypothetical proteinchromosome CDS259672 555 - 0.513514
NA YE3373 putative integrasechromosome CDS3684016 1617 - 0.42919
NA YE0296 hypothetical proteinchromosome CDS346420 786 + 0.515267
NA YE3041 transposase for insertion element IS3 (pseudogene)chromosome CDS3309069 393 + 0.521628
NA YE3116 putative 6-O-methylguanine DNA methyltransferase family proteinchromosome CDS3388337 390 + 0.474359
NA YE2774 transposase for insertion sequence element IS1660chromosome CDS3010777 1338 + 0.559791
NA YE1818 transposase for insertion sequence element IS1328chromosome CDS2005427 1005 + 0.520398
NA YEP0001 putative transposasepYVe8081 CDS628 660 + 0.477273
NA YE3040 transposase for insertion element IS3chromosome CDS3308773 300 + 0.53
NA YE3888 hypothetical proteinchromosome CDS4248437 1122 - 0.501783
NA YE1512 hypothetical proteinchromosome CDS1688517 1665 + 0.485285
NA YE1681 prophage encoded DNA modification methylasechromosome CDS1876566 1359 - 0.357616
NA YE0538 transposase for insertion sequence element IS1660chromosome CDS613229 1335 + 0.5603
NA YE0993 putative prophage integrasechromosome CDS1114774 1230 - 0.456911
acrB YE4170 DNA gyrase subunit Bchromosome CDS4568018 2415 - 0.491511
b0183 YE3270 ribonuclease HIIchromosome CDS3571100 597 - 0.492462
b4052 YE3849 replicative DNA helicasechromosome CDS4198141 1407 - 0.503909
b4058 YE3845 excinuclease ABC subunit Achromosome CDS4192071 2832 + 0.518008
b4170 YE0375 DNA mismatch repair proteinchromosome CDS443198 1908 + 0.513627
b4372 YE0562 DNA polymerase III, psi subunitchromosome CDS647457 438 + 0.547945
cpeA YE2758 exodeoxyribonuclease Ichromosome CDS2992871 1431 + 0.496157
csdA YE0440 cold-shock dead-box protein Achromosome CDS511217 1974 + 0.515198
dam YE3972 DNA adenine methylasechromosome CDS4316547 813 - 0.467405
dasF YE0921 ribonuclease HIchromosome CDS1048190 465 - 0.490323
dbpA YE1785 ATP-dependent RNA helicasechromosome CDS1979790 1383 + 0.517715
dcm YE2362 putative cytosine-specific modification methylasechromosome CDS2551018 1746 + 0.524628
dinA YE0637 DNA polymerase IIchromosome CDS733066 2373 - 0.531395
dinG YE2855 putative ATP-dependent helicase DinGchromosome CDS3103372 2184 - 0.499084
dinP YE3207 DNA-damage-inducible protein Pchromosome CDS3493491 1059 - 0.483475
dnaA YE4173 chromosomal replication initiator proteinchromosome CDS4572805 1389 - 0.483081
dnaB2 YE3514 putative DNA helicasechromosome CDS3825720 1368 - 0.497076
dnaE YE3269 DNA polymerase III, alpha chainchromosome CDS3567507 3516 - 0.486633
dnaL YE1211 DNA ligasechromosome CDS1350408 2019 + 0.519564
dnaN YE4172 DNA polymerase III, beta subunit proteinchromosome CDS4571700 1101 - 0.50772
dnaQ YE0922 DNA polymerase III, epsilon chainchromosome CDS1048780 717 + 0.467225
dnaX YE3093 DNA polymerase III subunit Tau (contains DNA polymerase III subunit Gamma)chromosome CDS3363766 1971 - 0.525622
dps YE2843 putative DNA-binding proteinchromosome CDS3091166 510 + 0.437255
endA YE3425 endonuclease Ichromosome CDS3740064 708 + 0.485876
exo YE3297 exodeoxyribonuclease IXchromosome CDS3599192 756 + 0.486772
exrB YE3844 single-strand binding proteinchromosome CDS4191120 552 - 0.559783
fdv YE0776 DNA mismatch repair protein MutSchromosome CDS898643 2556 - 0.501956
fiS YE3817 DNA-binding protein Fischromosome CDS4164615 297 + 0.464646
fpg YE0066 formamidopyrimidine-DNA glycosylasechromosome CDS74876 810 + 0.487654
gyrA YE1395 DNA gyrase subunit Achromosome CDS1559825 2658 + 0.508653
hepA YE0636 RNA polymerase associated helicasechromosome CDS730023 2907 - 0.511868
hid YE1918 integration host factor alpha-subunitchromosome CDS2099211 297 + 0.47138
himD YE1541 integration host factor beta-subunitchromosome CDS1730245 285 + 0.466667
holA YE2998 DNA polymerase III, delta subunitchromosome CDS3269571 1035 + 0.477295
holB YE1641 DNA polymerase III, delta' subunitchromosome CDS1845739 1008 + 0.532738
holC YE0499 DNA polymerase III, chi subunitchromosome CDS574532 450 - 0.56
hopD YE3131 DNA-binding protein HU-betachromosome CDS3405222 273 - 0.479853
hrpA YE2090 ATP-dependent helicasechromosome CDS2286528 3843 - 0.496487
hrpB YE0728 ATP-dependent helicasechromosome CDS842483 2307 + 0.548765
hupA YE0300 DNA-binding protein HU-alphachromosome CDS349906 276 + 0.438406
int YE2364 putative phage integrasechromosome CDS2553376 1290 + 0.423256
int YE1799 phage integrasechromosome CDS1991800 1056 - 0.448864
int YE1692 P2-like phage integrasechromosome CDS1886248 984 + 0.441057
int YE0853 integrasechromosome CDS981320 999 - 0.423423
lexB YE0829 RecA proteinchromosome CDS956095 1065 + 0.462911
mfd YE1709 transcription-repair coupling factorchromosome CDS1904376 3447 - 0.51378
mmrA YE0166 putative DEAD-box helicasechromosome CDS198907 1077 - 0.480966
mttC YE0262 deoxyribonuclease TatD (pseudogene)chromosome CDS300973 783 + 0.494253
mutB YE3443 A/G-specific adenine glycosylasechromosome CDS3755473 1089 + 0.497704
mutH YE3322 DNA mismatch repair proteinchromosome CDS3630481 687 + 0.515284
mutT YE0682 mutator protein MutTchromosome CDS788821 387 + 0.452196
mutU YE0196 DNA helicase IIchromosome CDS230599 2163 + 0.524734
nfi YE0298 endonuclease Vchromosome CDS348377 705 + 0.516312
nfo YE1455 endonuclease IVchromosome CDS1633555 846 - 0.50591
nfxD YE3660 topoisomerase IV subunit Bchromosome CDS3992048 1896 - 0.507911
nth YE1987 endonuclease IIIchromosome CDS2169525 642 - 0.479751
ntpA YE2396 putative dATP pyrophosphohydrolasechromosome CDS2584623 423 - 0.496454
nudG YE2255 putative pyrophosphohydrolasechromosome CDS2463976 387 + 0.478036
ogt YE2074 putative methylated-DNA--protein-cysteine methyltransferasechromosome CDS2270141 519 + 0.481696
parC YE3656 DNA topoisomerase IV subunit Achromosome CDS3987565 2277 - 0.50022
phr YE2957 putative deoxyribodipyrimidine photolyasechromosome CDS3216448 1446 - 0.51314
polA YE0021 DNA polymerase Ichromosome CDS27070 2799 + 0.469811
priA YE0108 primosomal protein n'chromosome CDS117622 2199 - 0.535243
priB YE0393 primosomal replication protein nchromosome CDS460832 321 + 0.479751
radC YE0063 putative DNA repair proteinchromosome CDS73442 669 + 0.460389
rbaB YE1007 ATP-dependent RNA helicasechromosome CDS1126359 1326 - 0.502262
rdgC YE3186 recombination associated protein RdgCchromosome CDS3463646 912 + 0.45614
recC YE3312 exodeoxyribonuclease V gamma chainchromosome CDS3619451 3372 - 0.468268
recD YE3309 exodeoxyribonuclease V alpha chainchromosome CDS3610936 1902 - 0.503155
recF YE4171 DNA metabolism proteinchromosome CDS4570452 1086 - 0.515654
recG YE0043 ATP-dependent DNA helicasechromosome CDS52840 2082 - 0.509606
recJ YE3378 single-stranded-DNA-specific exonucleasechromosome CDS3689253 1734 - 0.528258
recO YE1019 DNA repair proteinchromosome CDS1139061 726 + 0.513774
recR YE3091 recombination protein RecRchromosome CDS3362773 606 - 0.531353
relB YE0510 RelB proteinchromosome CDS582668 255 + 0.407843
rep YE0163 ATP-dependent DNA helicase Repchromosome CDS193159 2025 + 0.481975
rhlE YE2889 putative ATP-dependent RNA helicasechromosome CDS3140549 1356 - 0.527286
rnt YE2154 ribonuclease Tchromosome CDS2354147 648 + 0.492284
ruvA YE2393 Holliday junction DNA helicasechromosome CDS2582310 618 - 0.480583
ruvB YE2392 Holliday junction DNA helicasechromosome CDS2581270 1005 - 0.512438
ruvC YE2394 crossover junction endodeoxyribonucleasechromosome CDS2583050 522 - 0.52682
sbcC YE3184 exonucleasechromosome CDS3458414 3690 + 0.47832
sbcD YE3183 exonuclease SbcDchromosome CDS3457179 1239 + 0.49314
seqA YE2968 putative negative regulator of replication initiationchromosome CDS3231175 540 - 0.483333
supX YE2199 DNA topoisomerase Ichromosome CDS2409236 2616 - 0.485856
tag YE4152 DNA-3-methyladenine glycosylasechromosome CDS4546786 573 + 0.488656
tnp YEP0094 transposase for IS1541pYVe8081 CDS65333 459 + 0.461874
tnp YE1001 transposase for IS1541chromosome CDS1122080 459 + 0.46841
tnp YE1694 transposase for IS1541chromosome CDS1888605 459 + 0.46841
tnpA YE3043 IS1329 transposase Achromosome CDS3310600 333 + 0.462462
tnpA YE2626 IS1329 transposase Achromosome CDS2844799 333 - 0.462462
tnpA YE0831 IS1329 transposase Achromosome CDS957461 333 + 0.462462
tnpA YE1827 IS1329 transposase Achromosome CDS2012692 333 - 0.462462
tnpB YE2625 transposase Bchromosome CDS2843960 750 - 0.492
tnpB YE1803 transposase Bchromosome CDS1993951 750 - 0.492
tnpB YE3044 transposase Bchromosome CDS3311022 750 + 0.492
tnpB YE0832 IS1329 transposase Bchromosome CDS957883 750 + 0.490667
topB YE2257 DNA topoisomerase IIIchromosome CDS2464654 1929 - 0.490928
trp1400B YE2629 IS1400 transposase Bchromosome CDS2846919 795 - 0.514465
trp1400B YE1122 IS1400 transposase Bchromosome CDS1261887 795 - 0.516981
umuC YE1732 putative uv protection and mutation proteinchromosome CDS1932015 1269 - 0.464145
ung YE1002 putative uracil-DNA glycosylasechromosome CDS1122673 687 - 0.490539
uvrB YE2902 excinuclease ABC subunit Bchromosome CDS3153347 2013 - 0.501739
uvrC YE1830 excinuclease ABC subunit Cchromosome CDS2014497 1833 - 0.448991
xerC YE0194 putative integrase/recombinasechromosome CDS228871 912 + 0.536184
xerD YE3380 integrase/recombinasechromosome CDS3691758 900 - 0.507778
xseA YE1080 exodeoxyribonuclease VII large subunitchromosome CDS1208595 1377 - 0.526507
xseB YE3153 exodeoxyribonuclease VII small subunitchromosome CDS3427349 255 + 0.52549
xth YE2254 exodeoxyribonuclease IIIchromosome CDS2463086 807 + 0.468401