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2024-05-18 13:18:26

Gene list

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COG category: Replication, recombination and repair
Organism: Escherichia coli APEC O1, APEC O1

Number of genes found: 185

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Escherichia coli APEC O1, APEC O1
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA APECO1_1179 phage related tail proteinchromosome CDS2261314 2448 - 0.561683
NA APECO1_1080 truncated transposasechromosome CDS2145991 984 - 0.514228
NA APECO1_4218 putative phage integrasechromosome CDS2570223 1158 + 0.477547
NA APECO1_3889 bacteriophage V small terminase subunitchromosome CDS2939609 495 - 0.585859
NA APECO1_3499 putative transposase for IS629chromosome CDS3341809 888 - 0.537162
NA APECO1_2259 hypothetical proteinchromosome CDS4765590 366 - 0.431694
NA APECO1_3888 putative phage endonucleasechromosome CDS2940229 351 - 0.584046
NA APECO1_2270 transposase insF for insertion sequence IS3A/B/C/D/E/fAchromosome CDS4754911 813 - 0.503075
NA APECO1_2052 hypothetical proteinchromosome CDS5003641 1215 + 0.44856
NA APECO1_4187 putative replicative DNA helicasechromosome CDS2600601 1377 - 0.526507
NA APECO1_3161 hypothetical proteinchromosome CDS3723152 1125 - 0.505778
NA APECO1_216 putative phosphohydrolasechromosome CDS1176195 462 - 0.510823
NA APECO1_1088 putative transposase subunitchromosome CDS2152251 852 - 0.42723
NA APECO1_548 putative integrasechromosome CDS1519398 309 - 0.508091
NA APECO1_3944 ISEc12 putative ATP-binding proteinchromosome CDS2879972 336 - 0.482143
NA APECO1_2475 DNA-binding protein HU-alphachromosome CDS4520819 273 + 0.483516
NA APECO1_3496 hypothetical proteinchromosome CDS3347238 741 - 0.520918
NA APECO1_3529 ISEc12 putative ATP-binding proteinchromosome CDS3313158 750 - 0.485333
NA APECO1_1948 putative transposasechromosome CDS36135 459 + 0.457516
NA APECO1_3437 hypothetical proteinchromosome CDS3416173 771 - 0.525292
NA APECO1_1051 putative phage integrasechromosome CDS2091013 963 + 0.535826
NA APECO1_1715 integrasechromosome CDS305925 1335 - 0.441948
NA APECO1_2273 putative TatD-related deoxyribonucleasechromosome CDS4751381 726 + 0.431129
NA APECO1_6007 phage-related minor tail proteinchromosome CDS2060436 3246 - 0.520025
NA APECO1_1049 putative phage integrasechromosome CDS2088398 1026 + 0.423977
NA APECO1_3635 single-stranded-DNA-specific exonuclease RecJchromosome CDS3232134 1593 - 0.568738
NA APECO1_2275 hypothetical proteinchromosome CDS4749331 753 + 0.466135
NA APECO1_2258 hypothetical proteinchromosome CDS4766031 327 - 0.547401
NA APECO1_2306 transposase InsC for insertion element IS2A/D/F/H/I/Kchromosome CDS4719452 336 - 0.514881
NA APECO1_4458 putative phage integrasechromosome CDS2281407 1014 + 0.445759
NA APECO1_3534 putative P4-like integrasechromosome CDS3305290 1263 + 0.489311
NA APECO1_2297 hypothetical proteinchromosome CDS4727739 540 - 0.583333
NA APECO1_3866 hypothetical proteinchromosome CDS2954976 1173 + 0.44075
NA APECO1_2298 hypothetical proteinchromosome CDS4727190 522 - 0.555556
NA APECO1_388 putative DNA adenine methyltransferase encoded by prophage CP-933Ochromosome CDS1341925 1050 + 0.530476
NA APECO1_2398 excinuclease ABC subunit Achromosome CDS4612124 2823 - 0.558271
NA APECO1_1189 Integrasechromosome CDS919802 996 - 0.445783
NA APECO1_1182 hypothetical proteinchromosome CDS2274092 1050 + 0.380952
NA APECO1_3532 superfamily I DNA helicasechromosome CDS3306992 3528 + 0.470805
NA APECO1_4020 integrase-like proteinchromosome CDS2777637 1257 - 0.48926
NA APECO1_3704 ISEc12 putative ATP-binding proteinchromosome CDS3136943 750 - 0.486667
NA APECO1_3941 putative transposase subunitchromosome CDS2883791 723 - 0.49101
NA APECO1_1681 hypothetical proteinchromosome CDS351484 603 - 0.424544
NA APECO1_1089 putative transposase subunitchromosome CDS2153099 522 - 0.455939
alkA APECO1_1159 3-methyl-adenine DNA glycosylase IIchromosome CDS2234320 849 - 0.550059
dam APECO1_3076 DNA adenine methylasechromosome CDS3800522 837 - 0.492234
dbpA APECO1_495 ATP-independent RNA helicase DbpAchromosome CDS1464582 1374 + 0.521106
dcm APECO1_998 DNA cytosine methylasechromosome CDS2038224 1419 - 0.522199
deaD APECO1_3268 inducible ATP-independent RNA helicasechromosome CDS3598706 1941 - 0.552293
dinB APECO1_1738 DNA polymerase IVchromosome CDS282876 1056 + 0.538826
dinG APECO1_1291 putative ATP-dependent helicase dinGchromosome CDS797315 2151 + 0.542073
dnaA APECO1_2755 chromosomal replication initiation proteinchromosome CDS4176691 1416 - 0.540254
dnaB APECO1_2415 replicative DNA helicase protein DnaBchromosome CDS4591240 1416 + 0.528955
dnaC APECO1_2063 DNA replication protein DnaCchromosome CDS4994235 738 - 0.504065
dnaE APECO1_1803 DNA polymerase III alpha subunitchromosome CDS209903 3483 + 0.544071
dnaG APECO1_3349 DNA primasechromosome CDS3511823 1746 + 0.52291
dnaN APECO1_2756 DNA polymerase III subunit betachromosome CDS4175586 1101 - 0.546776
dnaQ APECO1_1775 DNA polymerase III subunit epsilonchromosome CDS241004 741 + 0.512821
dnaX APECO1_1545 DNA polymerase III subunits gamma and tauchromosome CDS507821 1932 + 0.572981
dps APECO1_1279 stationary phase nucleoid protein Dpschromosome CDS812682 597 - 0.472362
endA APECO1_3576 DNA-specific endonuclease Ichromosome CDS3285094 708 + 0.535311
exo APECO1_3733 exodeoxyribonuclease IXchromosome CDS3100128 645 + 0.528682
exoX APECO1_895 exodeoxyribonuclease Xchromosome CDS1934033 663 + 0.515837
fimB APECO1_2118 type 1 fimbriae regulatory protein FimBchromosome CDS4921929 603 + 0.427861
fimE APECO1_2117 type 1 fimbriae regulatory protein FimEchromosome CDS4923009 597 + 0.470687
fis APECO1_3177 DNA-binding proteinchromosome CDS3702139 297 + 0.468013
gpT APECO1_11 gpTchromosome CDS950028 2448 + 0.565768
gyrA APECO1_4329 DNA gyrase subunit Achromosome CDS2445786 2628 - 0.537291
gyrB APECO1_2758 DNA gyrase subunit Bchromosome CDS4172070 2415 - 0.547412
had APECO1_4073 DNA replication initiation factorchromosome CDS2726436 747 - 0.534137
hepA APECO1_1925 ATP-dependent helicase HepAchromosome CDS62179 2907 - 0.55246
hnhC APECO1_1027 HnhCchromosome CDS2072287 351 - 0.54416
holA APECO1_1415 DNA polymerase III subunit deltachromosome CDS654025 1032 - 0.528101
holB APECO1_180 DNA polymerase III, delta prime subunitchromosome CDS1138113 1005 + 0.542289
holC APECO1_2135 DNA polymerase III subunit chichromosome CDS4900390 444 - 0.536036
hrpB APECO1_1837 ATP-dependent helicase HrpBchromosome CDS168082 2475 + 0.566061
hsdM APECO1_2077 DNA methylase Mchromosome CDS4971687 1590 - 0.554088
hsdR APECO1_2076 DNA methylase Rchromosome CDS4973478 3513 - 0.543126
hsdS APECO1_2078 HsdS, type I site-specific deoxyribonucleasechromosome CDS4970323 1368 - 0.440789
hupB APECO1_1571 DNA-binding protein HU-beta, NS1 (HU-1)chromosome CDS477167 273 + 0.490842
insA APECO1_2262 IS1 InsA proteinchromosome CDS4763708 276 + 0.521739
insA APECO1_2256 IS1 InsA proteinchromosome CDS4766820 276 - 0.521739
insA APECO1_2266 IS1 InsA proteinchromosome CDS4757523 273 - 0.479853
insB APECO1_2261 IS1 InsB proteinchromosome CDS4763902 504 + 0.549603
insB APECO1_2267 IS1 InsB proteinchromosome CDS4757137 360 - 0.530556
insC APECO1_3513 IS2 transposasechromosome CDS3327566 291 + 0.498282
insD APECO1_3512 IS2 transposasechromosome CDS3327814 714 + 0.530812
insN APECO1_2269 transposase InsN for insertion sequence element IS911Bchromosome CDS4755780 324 - 0.447531
int APECO1_2254 Int (Putative P4-type integrase)chromosome CDS4768924 1266 - 0.487362
int APECO1_219 prophage lambda integrasechromosome CDS1178855 1143 - 0.433071
intO APECO1_373 putative integrase for prophage CP-933Ochromosome CDS1326979 1131 - 0.464191
intR APECO1_497 Rac prophage; integrasechromosome CDS1467071 1236 - 0.435275
ligA APECO1_4135 NAD-dependent DNA ligase LigAchromosome CDS2660465 2016 - 0.543155
mfd APECO1_195 transcription-repair coupling factor; mutation frequency declinechromosome CDS1152886 3495 - 0.546209
mrr APECO1_2075 methylated adenine and cytosine restriction proteinchromosome CDS4977178 915 + 0.499454
mutH APECO1_3674 DNA mismatch repair protein MutHchromosome CDS3177194 690 + 0.536232
mutL APECO1_2221 MutL, enzyme in methyl-directed mismatch repairchromosome CDS4804948 1848 + 0.560606
mutM APECO1_2824 formamidopyrimidine-DNA glycosylasechromosome CDS4101667 810 - 0.546914
mutS APECO1_3791 DNA mismatch repair protein MutSchromosome CDS3031808 2562 + 0.553864
mutT APECO1_1887 nucleoside triphosphate pyrophosphohydrolase, marked preference for dGTPchromosome CDS113467 399 + 0.493734
mutY APECO1_3560 A/G-specific adenine glycosylasechromosome CDS3297664 1053 + 0.550807
nei APECO1_1361 endonuclease VIIIchromosome CDS719865 792 + 0.525253
nfi APECO1_2477 endonuclease Vchromosome CDS4519328 672 + 0.587798
nth APECO1_716 endonuclease III; specific for apurinic and/or apyrimidinic siteschromosome CDS1732913 636 + 0.482704
ntpA APECO1_915 dATP pyrophosphohydrolasechromosome CDS1956165 444 - 0.527027
nudC APECO1_2479 NADH pyrophosphatase NudCchromosome CDS4517441 774 + 0.5323
nudE APECO1_3067 ADP-ribose diphosphatasechromosome CDS3811034 561 - 0.506239
nudF APECO1_3379 ADP-ribose pyrophosphatasechromosome CDS3475927 630 - 0.507937
ogt APECO1_488 O-6-alkylguanine-DNA/cysteine-protein methyltransferasechromosome CDS1456358 516 - 0.532946
parC APECO1_3400 DNA topoisomerase IV subunit Achromosome CDS3454900 2259 - 0.550686
parE APECO1_3383 DNA topoisomerase IV subunit Bchromosome CDS3472150 1893 - 0.536714
phrB APECO1_1367 deoxyribodipyrimidine photolyasechromosome CDS713545 1419 + 0.537703
pinR APECO1_2008 Rac prophage; predicted site-specific recombinasechromosome CDS5047411 591 - 0.450085
polA APECO1_2598 DNA polymerase Ichromosome CDS4365137 2787 + 0.521708
polB APECO1_1924 DNA polymerase IIchromosome CDS65249 2352 - 0.555697
priA APECO1_2535 primosome factor n' (replication factor Y)chromosome CDS4433624 2271 - 0.56583
priB APECO1_2191 primosomal replication protein Nchromosome CDS4832967 315 + 0.520635
radC APECO1_2823 DNA repair protein RadCchromosome CDS4103215 675 - 0.485926
rdgC APECO1_1616 recombination associated proteinchromosome CDS424933 858 - 0.524476
recA APECO1_3827 DNA strand exchange and recombination protein with protease and nuclease activitychromosome CDS2996266 1077 - 0.534819
recB APECO1_3685 exodeoxyribonuclease V beta chainchromosome CDS3159992 3543 - 0.542478
recC APECO1_3683 exodeoxyribonuclease V gamma chainchromosome CDS3166591 3369 - 0.535767
recD APECO1_3686 exodeoxyribonuclease V alpha chainchromosome CDS3158166 1827 - 0.550082
recF APECO1_2757 recombination protein Fchromosome CDS4174513 1074 - 0.548417
recG APECO1_2809 ATP-dependent DNA helicase RecGchromosome CDS4116505 2115 + 0.568794
recN APECO1_3918 DNA recombination and repair protein RecNchromosome CDS2910909 1662 + 0.519856
recO APECO1_3966 gap repair protein RecOchromosome CDS2855821 729 - 0.541838
recQ APECO1_2654 ATP-dependent DNA helicasechromosome CDS4302868 1836 + 0.542484
recR APECO1_1543 recombination protein RecRchromosome CDS510134 606 + 0.569307
rhlB APECO1_2693 ATP-dependent RNA helicasechromosome CDS4257156 1266 - 0.521327
rhlE APECO1_1293 putative ATP-dependent RNA helicase RhlEchromosome CDS795417 1362 + 0.562408
rnhA APECO1_1776 RNase HI, degrades RNA of DNA-RNA hybrids, participates in DNA replicationchromosome CDS240481 579 - 0.483592
rnhB APECO1_1804 ribonuclease HIIchromosome CDS209270 597 + 0.559464
rnt APECO1_734 RNase Tchromosome CDS1749735 648 + 0.546296
rusA APECO1_239 endonuclease RUSchromosome CDS1192772 363 + 0.53168
ruvA APECO1_911 Holliday junction DNA helicase motor proteinchromosome CDS1953348 612 - 0.534314
ruvB APECO1_910 Holliday junction DNA helicase ruvBchromosome CDS1952329 1011 - 0.522255
ruvC APECO1_913 crossover junction endodeoxyribonucleasechromosome CDS1954840 525 - 0.55619
sbcD APECO1_1612 ATP-dependent dsDNA exonucleasechromosome CDS431597 1227 - 0.530562
sbmC APECO1_1107 DNA gyrase inhibitorchromosome CDS2169600 474 - 0.472574
seqA APECO1_1377 negative modulator of initiation of replicationchromosome CDS698183 546 + 0.494505
srmB APECO1_39552 putative transcriptional regulator YfiEchromosome CDS2866971 1335 + 0.544569
ssb APECO1_2397 single strand DNA-binding proteinchromosome CDS4615143 594 + 0.565657
tag APECO1_2899 3-methyl-adenine DNA glycosylase I, constitutivechromosome CDS4012977 729 + 0.475995
tatD APECO1_2616 DNase, magnesium-dependentchromosome CDS4341984 795 + 0.545912
thrL APECO1_810 endonuclease of nucleotide excision repairchromosome CDS1838204 888 + 0.503378
tnpA APECO1_7 TnpAchromosome CDS947354 750 + 0.486667
topA APECO1_434 DNA topoisomerase Ichromosome CDS1389867 2640 + 0.517045
umuC APECO1_296 mutagenesis and repair protein UmuCchromosome CDS1242346 1269 + 0.506698
ung APECO1_3952 uracil-DNA-glycosylasechromosome CDS2870653 690 + 0.52029
uvrB APECO1_1310 excision nuclease subunit Bchromosome CDS778224 2022 + 0.532641
uvrC APECO1_955 excinuclease ABC subunit Cchromosome CDS1997847 1833 - 0.513366
uvrD APECO1_2663 DNA-dependent ATPase I and helicase IIchromosome CDS4293341 2163 + 0.57975
wcaH APECO1_1141 GDP-mannose mannosyl hydrolasechromosome CDS2212787 483 - 0.552795
xerC APECO1_2665 site-specific tyrosine recombinase XerCchromosome CDS4291645 897 + 0.542921
xerD APECO1_3633 site-specific tyrosine recombinase XerDchromosome CDS3234608 795 - 0.538365
xseA APECO1_4017 exodeoxyribonuclease VII large subunitchromosome CDS2782360 1377 + 0.542484
xthA APECO1_818 exodeoxyribonuclease IIIchromosome CDS1847104 819 + 0.537241
yafM APECO1_1741 hypothetical proteinchromosome CDS279519 498 + 0.415663
ybaV APECO1_1569 hypothetical proteinchromosome CDS479653 372 + 0.540323
ybaZ APECO1_1557 hypothetical proteinchromosome CDS491710 390 - 0.546154
ybjD APECO1_1218 hypothetical proteinchromosome CDS878859 1659 + 0.53044
ycaJ APECO1_1197 putative polynucleotide enzymechromosome CDS909850 1344 + 0.534226
ycfH APECO1_181 putative metallodependent hydrolasechromosome CDS1139128 798 + 0.513784
ydaV APECO1_506 Rac prophage; predicted DNA replication proteinchromosome CDS1476877 747 + 0.539491
ydfP APECO1_2032 hypothetical proteinchromosome CDS5021488 498 + 0.463855
yeaB APECO1_870 hypothetical proteinchromosome CDS1904084 579 + 0.547496
yeeS APECO1_3488 putative radC-like protein YeeSchromosome CDS3355841 477 + 0.584906
yeeS3 APECO1_2316 putative radC-like protein YeeSchromosome CDS4709467 477 - 0.580713
yeiH APECO1_4393 hypothetical proteinchromosome CDS2364738 858 + 0.52331
yejH APECO1_4371 putative ATP-dependet helicasechromosome CDS2393372 1761 + 0.533788
yfaO APECO1_4310 putative Nudix hydrolase YfaOchromosome CDS2473264 426 + 0.474178
yfcD APECO1_4265 putative NUDIX hydrolasechromosome CDS2523465 543 - 0.535912
ygdP APECO1_3675 dinucleoside polyphosphate hydrolasechromosome CDS3175979 465 - 0.488172
ygjF APECO1_3347 G/U mismatch-specific DNA glycosylasechromosome CDS3515683 507 - 0.530572
yhbQ APECO1_3275 hypothetical proteinchromosome CDS3592701 303 + 0.541254
yhdJ APECO1_3176 putative adenine-specific methylase YhdJchromosome CDS3702523 885 + 0.480226
yhhF APECO1_2988 putative methyltransferasechromosome CDS3903510 597 + 0.541039
yicF APECO1_2814 NAD-dependent DNA ligasechromosome CDS4110816 1689 - 0.528123
yjjV APECO1_2003 putative deoxyribonuclease YjjVchromosome CDS5053836 636 + 0.540881
ynjG APECO1_829 CTP pyrophosphohydrolasechromosome CDS1856177 408 + 0.551471
yoaA APECO1_866 Probable ATP-dependent helicasechromosome CDS1899239 1911 - 0.55102
yqgF APECO1_3572 Holliday junction resolvase-like proteinchromosome CDS3288247 417 + 0.53717
yraN APECO1_3282 hypothetical proteinchromosome CDS3588130 396 + 0.54798
yrdD APECO1_3163 predicted DNA topoisomerasechromosome CDS3722136 543 - 0.497238