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2024-05-18 09:23:40

Gene list

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COG category: Replication, recombination and repair
Organism: Salmonella enterica subsp. enterica serovar Typhi str. CT18, CT18

Number of genes found: 254

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Salmonella enterica subsp. enterica serovar Typhi str. CT18, CT18
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA STY4822 protein kinasechromosome CDS4685181 1077 - 0.363045
NA STY4237 hypothetical proteinchromosome CDS4104402 372 + 0.532258
NA STY1358 integrase (fragment)chromosome CDS1319577 345 + 0.44058
NA HCM1.103 putative DNA helicasepHCM1 CDS78416 2040 + 0.504902
NA HCM1.57c hypothetical proteinpHCM1 CDS34194 1755 - 0.501994
NA STY4915 hypothetical proteinchromosome CDS4774545 774 + 0.591731
NA STY0756 probable DNA recombinasechromosome CDS757169 567 + 0.506173
NA HCM1.201 putative transposasepHCM1 CDS151052 1398 + 0.528612
NA STY3461 ATP-dependent RNA helicase (dead-box protein)chromosome CDS3301996 1941 - 0.573931
NA STY2737 DNA replication initiation factorchromosome CDS2573576 726 - 0.53719
NA STY0946 probable integrase remnantchromosome CDS937244 378 - 0.460317
NA STY4636 DNA adenine methylasechromosome CDS4502229 861 - 0.465738
NA STY3363 hypothetical proteinchromosome CDS3205236 633 - 0.530806
NA HCM2.0047 hypothetical proteinpHCM2 CDS35508 552 + 0.463768
NA STY0478 hypothetical proteinchromosome CDS483689 285 + 0.410526
NA HCM1.209c putative transposasepHCM1 CDS156075 1005 - 0.481592
NA STY1643 DNA-invertasechromosome CDS1572347 573 + 0.450262
NA STY1014 putative DNA methylasechromosome CDS1010618 882 - 0.530612
NA HCM1.194 transposasepHCM1 CDS143085 1209 + 0.450786
NA HCM1.59 putative DNA modification methylasepHCM1 CDS37651 825 + 0.476364
NA HCM2.0062c hypothetical proteinpHCM2 CDS53759 474 - 0.552743
NA STY1955 hypothetical proteinchromosome CDS1844138 579 + 0.588946
NA STY2062 DNA replication protein DnaCchromosome CDS1922526 747 - 0.534137
NA HCM1.162c putative transposasepHCM1 CDS119023 765 - 0.610458
NA HCM2.0015c putative DNA polymerase III alpha subunitpHCM2 CDS8084 3519 - 0.547883
NA HCM1.187c putative DNA modification methylasepHCM1 CDS137517 1428 - 0.489496
NA STY4797 hypothetical proteinchromosome CDS4658590 447 - 0.447427
NA HCM1.188 putative nucleasepHCM1 CDS139168 516 + 0.484496
NA STY2576 hypothetical proteinchromosome CDS2413430 555 - 0.544144
NA STY3667 DNA adenine methylasechromosome CDS3519664 858 + 0.463869
NA STY1499 hypothetical proteinchromosome CDS1456097 705 - 0.4
NA STY0114 putative IS element transposasechromosome CDS115571 441 - 0.460317
NA STY1023 DNA replication protein DnaCchromosome CDS1017163 750 + 0.529333
NA STY3193 possible integrasechromosome CDS3058163 1647 - 0.500911
NA HCM1.219 putative transposasepHCM1 CDS163369 705 + 0.531915
NA STY1804 hypothetical proteinchromosome CDS1723228 909 + 0.546755
NA STY0935 hypothetical proteinchromosome CDS927559 1659 + 0.556962
NA STY3658 probable bacteriophage integrasechromosome CDS3515470 1053 - 0.48433
NA STY1951 putative ATP-dependent helicasechromosome CDS1840118 1911 - 0.561486
NA STY2889 putative DNA-invertasechromosome CDS2768199 573 - 0.509599
NA STY4676 hypothetical proteinchromosome CDS4538390 783 + 0.586207
NA STY2879 putative reverse transcriptasechromosome CDS2759733 774 - 0.405685
NA HCM1.236 putative transposasepHCM1 CDS175403 1005 + 0.490547
NA HCM2.0078 putative helicasepHCM2 CDS65984 1560 + 0.514744
NA STY2056 putative transposasechromosome CDS1917993 1209 - 0.450786
NA STY2077 putative integrasechromosome CDS1932482 1077 + 0.42247
NA STY4522 DNA helicasechromosome CDS4410683 1365 + 0.530403
NA HCM1.211c.2N putative transposasepHCM1 CDS159691 717 + 0.532775
NA STY0115 putative IS element transposasechromosome CDS116031 1209 + 0.489661
NA HCM2.0020c hypothetical proteinpHCM2 CDS16239 891 - 0.50954
NA STY4664 putative DNA helicasechromosome CDS4525533 1512 + 0.508598
NA HCM1.213c putative transposasepHCM1 CDS160707 705 - 0.530496
NA STY1241 hypothetical proteinchromosome CDS1194941 798 + 0.530075
NA STY4586 hypothetical proteinchromosome CDS4463285 921 + 0.438654
NA STY1275 putative mutT family proteinchromosome CDS1232234 462 - 0.521645
NA STY4821 integrasechromosome CDS4683853 1266 + 0.496051
NA HCM2.0041c putative DNA helicasepHCM2 CDS29816 1341 - 0.548844
NA HCM2.0008c putative recombinasepHCM2 CDS2785 1077 - 0.552461
NA HCM2.0012 hypothetical proteinpHCM2 CDS6283 432 - 0.525463
NA HCM2.0127c hypothetical proteinpHCM2 CDS100950 1086 - 0.544199
NA STY4637 putative exonucleasechromosome CDS4503086 585 - 0.439316
NA STY1075 putative DNA invertase (fragment)chromosome CDS1051126 141 + 0.652482
NA STY1813 putative MutT-family proteinchromosome CDS1732384 417 + 0.570743
NA HCM1.134c putative recombinasepHCM1 CDS104515 1182 - 0.50423
NA STY4823 protein kinasechromosome CDS4686254 1074 - 0.349162
NA STY4124 insertion element IS1 protein InsAchromosome CDS3988152 276 + 0.536232
NA STY4666 probable phage integrasechromosome CDS4528781 1014 + 0.455621
NA STY1366 DNA-invertase (fragment)chromosome CDS1322944 282 + 0.553191
NA STY3454 hypothetical proteinchromosome CDS3295898 318 + 0.553459
NA STY1604 hypothetical proteinchromosome CDS1544282 1770 - 0.585311
NA HCM1.249c transposasepHCM1 CDS183230 1209 - 0.450786
NA HCM2.0040c hypothetical proteinpHCM2 CDS28542 1212 - 0.519802
NA HCM2.0114c hypothetical proteinpHCM2 CDS89018 558 - 0.544803
NA STY3145 dinucleoside polyphosphate hydrolasechromosome CDS3018413 531 - 0.506591
NA STY4392 hypothetical proteinchromosome CDS4252698 1125 + 0.536
NA STY1045 putative bacteriophage proteinchromosome CDS1028101 261 + 0.421456
NA HCM2.0010c putative exonucleasepHCM2 CDS4130 945 - 0.529101
NA STY3065 hypothetical proteinchromosome CDS2926948 918 - 0.529412
NA HCM2.0109c putative ribonuclease HpHCM2 CDS85641 609 - 0.54023
NA STY3250 Holliday junction resolvase-like proteinchromosome CDS3114351 417 + 0.551559
NA HCM2.0125c hypothetical proteinpHCM2 CDS98804 1917 - 0.53782
NA STY4645 phage integrasechromosome CDS4506245 1026 + 0.495127
NA STY2525 hypothetical proteinchromosome CDS2360194 426 + 0.495305
ada STY2491 ADA regulatory proteinchromosome CDS2320085 1062 - 0.608286
alkA STY2337 DNA-3-methyladenine glycosidase IIchromosome CDS2169451 870 - 0.612644
alkB STY2490 AlkB proteinchromosome CDS2319432 651 - 0.591398
dam STY4312 DNA adenine methylasechromosome CDS4191069 837 + 0.492234
dcm STY2200 DNA-cytosine methyltransferasechromosome CDS2037938 1431 - 0.540881
dinP STY0358 DNA polymerase IVchromosome CDS367097 1056 + 0.514205
dnaA STY3940 chromosomal replication initiation proteinchromosome CDS3805127 1401 + 0.529622
dnaB STY4442 replicative DNA helicasechromosome CDS4311715 1416 + 0.550141
dnaC STY4896 DNA replication protein DnaCchromosome CDS4759357 738 - 0.51084
dnaE STY0254 DNA polymerase III subunit alphachromosome CDS266430 3483 + 0.558714
dnaG STY3389 DNA primasechromosome CDS3232006 1746 + 0.517182
dnaN STY3941 DNA polymerase III subunit betachromosome CDS3806532 1101 + 0.563124
dnaQ STY0285 DNA polymerase III subunit epsilonchromosome CDS301227 732 + 0.516393
dnaX STY0528 DNA polymerase III subunits gamma and tauchromosome CDS533757 1929 + 0.589425
endA STY3246 endonuclease Ichromosome CDS3111090 708 + 0.560734
exoX STY2084 exodeoxyribonuclease Xchromosome CDS1936709 699 + 0.519313
fis STY3565 DNA-binding protein Fischromosome CDS3409864 297 + 0.464646
gyrA STY2499 DNA gyrase subunit Achromosome CDS2331373 2637 - 0.555556
gyrB STY3943 DNA gyrase subunit Bchromosome CDS3808932 2415 + 0.556522
helD STY1097 helicase IV (75 kD helicase)chromosome CDS1075470 2055 + 0.549392
hepA STY0111 ATP-dependent helicase HepAchromosome CDS109800 2907 - 0.570347
himA STY1771 integration host factor alpha subunitchromosome CDS1693319 300 - 0.483333
himD STY0982 integration host factor beta subunitchromosome CDS978131 285 + 0.501754
holA STY0697 DNA polymerase III subunit deltachromosome CDS692238 1032 - 0.575581
holB STY1240 DNA polymerase III subunit deltachromosome CDS1193926 1005 + 0.58607
holC STY4815 DNA polymerase III subunit chichromosome CDS4675956 483 - 0.536232
holD STY4907 DNA polymerase III subunit psichromosome CDS4768834 438 + 0.59589
hrpA STY1428 ATP-dependent helicase HrpAchromosome CDS1378457 3903 + 0.536767
hrpB STY0214 ATP-dependent helicase HrpBchromosome CDS222750 2442 + 0.595823
hupA STY3715 histone like DNA-binding protein HU-alpha (NS2) (HU-2)chromosome CDS3565553 273 - 0.47619
hupB STY0493 DNA-binding protein HU-betachromosome CDS500253 273 + 0.494505
insA HCM1.136 putative IS1 transposasepHCM1 CDS106430 276 + 0.528986
insA STY4658 insertion element IS1 proteinchromosome CDS4518711 276 - 0.536232
insA STY2420 insertion element IS1 protein InsAchromosome CDS2249889 276 - 0.536232
insA HCM1.205c putative IS1 transposasepHCM1 CDS153973 276 - 0.536232
insA HCM1.05c putative IS1 transposasepHCM1 CDS2265 276 - 0.528986
insA HCM1.138 putative IS1 transposasepHCM1 CDS108842 276 + 0.532609
insA HCM1.239c putative IS1 transposasepHCM1 CDS177180 276 - 0.536232
insB STY2419 insertion element IS1 protein InsBchromosome CDS2249467 504 - 0.551587
insB HCM1.136a putative IS1 transposasepHCM1 CDS106624 504 + 0.547619
insB STY4657 insertion element IS1 protein InsBchromosome CDS4518289 504 - 0.551587
insB STY4125 insertion element IS1 protein InsBchromosome CDS3988346 504 + 0.551587
insB HCM1.04c putative IS1 transposasepHCM1 CDS1876 471 - 0.545648
insB HCM1.204c putative IS1 transposasepHCM1 CDS153551 504 - 0.551587
insB HCM1.139 putative IS1 transposasepHCM1 CDS109036 504 + 0.545635
insB HCM1.238c putative IS1 transposasepHCM1 CDS176758 504 - 0.551587
int STY4680 bacteriophage integrasechromosome CDS4541654 1260 - 0.566667
int HCM1.167 putative integrasepHCM1 CDS121046 1014 + 0.61144
int STY4678 integrase (fragment)chromosome CDS4539799 279 - 0.577061
int STY1011 integrasechromosome CDS1008747 1341 - 0.488441
ligA STY2663 DNA ligasechromosome CDS2499609 2016 - 0.571925
mfd STY1256 transcription-repair coupling factor (TrcF)chromosome CDS1208383 3447 - 0.56832
mod STY0388 type III restriction-modification system StyLTI enzyme modchromosome CDS394911 1959 + 0.466565
mucB HCM1.253 putative DNA-repair modulatorpHCM1 CDS186216 1260 + 0.525397
mug STY3391 G/U mismatch-specific DNA glycosylasechromosome CDS3235872 507 - 0.538462
mutH STY3148 DNA mismatch repair proteinchromosome CDS3019626 696 + 0.579023
mutL STY4716 DNA mismatch repair proteinchromosome CDS4578042 1857 + 0.58266
mutM STY4068 formamidopyrimidine-DNA glycosylasechromosome CDS3926357 810 + 0.546914
mutS STY3033 DNA mismatch repair proteinchromosome CDS2900744 2568 + 0.569704
mutT STY0157 7,8-dihydro-8-oxoguanine-triphosphatasechromosome CDS162968 396 + 0.520202
mutY STY3265 A/G-specific adenine glycosylasechromosome CDS3125080 1053 + 0.548908
nei STY0771 endonuclease VIII, DNA N-glycosylase with an AP lyase activitychromosome CDS768705 792 + 0.52399
nfi STY3717 putative endonucleasechromosome CDS3566644 672 - 0.58631
nfo STY2438 endonuclease IVchromosome CDS2269017 858 + 0.536131
nth STY1669 endonuclease IIIchromosome CDS1597769 636 + 0.522013
ntpA STY2108 dATP pyrophosphohydrolasechromosome CDS1959515 453 - 0.529801
nudC STY3719 NADH pyrophosphatasechromosome CDS3568430 774 - 0.555556
ogt STY1405 O6-methylguanine-DNA-alkyltransferasechromosome CDS1356335 516 - 0.552326
parC STY3351 DNA topoisomerase IV subunit Achromosome CDS3194450 2259 - 0.55954
parE STY3359 DNA topoisomerase IV subunit Bchromosome CDS3201464 1893 - 0.555732
phrB STY0749 deoxyribodipyrimidine photolyasechromosome CDS750319 1422 + 0.567511
pin STY3695 DNA-invertasechromosome CDS3541120 567 + 0.511464
polA STY3881 DNA polymerase Ichromosome CDS3736421 2787 - 0.53929
polB STY0112 DNA polymerase IIchromosome CDS112880 2352 - 0.565901
ppdB STY3137 prepilin peptidase dependent protein B precursorchromosome CDS3012345 564 - 0.535461
priA STY3775 primosome assembly protein PriAchromosome CDS3639854 2199 + 0.593452
priB STY4748 primosomal replication protein Nchromosome CDS4606459 315 + 0.530159
radC STY4065 DNA repair protein RadCchromosome CDS3924952 666 + 0.527027
rci STY4552 shufflon-specific DNA recombinasechromosome CDS4435339 1152 + 0.49566
rdgC STY0425 recombination associated proteinchromosome CDS434430 846 - 0.546099
recA STY2950 recombinase Achromosome CDS2827753 1062 - 0.544256
recB STY3132 exonuclease V subunitchromosome CDS3001645 3546 - 0.556402
recC STY3134 exonuclease V subunitchromosome CDS3008249 3372 - 0.537367
recD STY3131 exonuclease V alpha-subunitchromosome CDS2999813 1836 - 0.585512
recF STY3942 recombination protein Fchromosome CDS3807830 1074 + 0.546555
recG STY4048 ATP-dependent DNA helicasechromosome CDS3909336 2082 - 0.582133
recJ STY3198 single-stranded DNA-specific exonucleasechromosome CDS3064471 1734 - 0.572664
recN STY2870 DNA repair proteinchromosome CDS2739173 1662 + 0.54633
recO STY2825 DNA repair protein RecOchromosome CDS2687272 729 - 0.554184
recQ STY3601 ATP-dependent DNA helicasechromosome CDS3455088 1830 - 0.551366
recR STY0530 recombination protein RecRchromosome CDS536060 606 + 0.613861
relB STY4788 RelB proteinchromosome CDS4647525 243 + 0.502058
rep STY3642 ATP-dependent DNA helicasechromosome CDS3499842 2025 - 0.528395
rep HCM1.137 putative replication initiation proteinpHCM1 CDS107709 756 + 0.480159
rhlB STY3640 ATP-dependent RNA helicasechromosome CDS3496937 1266 + 0.546604
rhlE STY0855 putative ATP-dependent RNA helicase rhlEchromosome CDS849385 1368 + 0.584795
rnhA STY0284 ribonuclease Hchromosome CDS300696 468 - 0.502137
rnhB STY0253 ribonuclease HIIchromosome CDS265810 597 + 0.561139
rnt STY1688 ribonuclease Tchromosome CDS1614382 648 + 0.529321
ruvA STY2103 Holliday junction DNA helicase motor proteinchromosome CDS1955713 612 - 0.553922
ruvB STY2102 Holliday junction DNA helicase RuvBchromosome CDS1954694 1011 - 0.569733
ruvC STY2106 Holliday junction resolvasechromosome CDS1958187 522 - 0.55364
samB STY4597 DNA polymerase IVchromosome CDS4472479 1275 - 0.50902
sbcB STY2276 exodeoxyribonuclease Ichromosome CDS2101051 1431 + 0.539483
sbcC STY0429 exonuclease SbcCchromosome CDS437771 3105 - 0.585185
sbcD STY0430 exonuclease SbcDchromosome CDS440872 1203 - 0.558603
sbmC STY2266 putative DNA gyrase inhibitory proteinchromosome CDS2092179 468 - 0.508547
seqA STY0735 seqA proteinchromosome CDS735177 543 + 0.510129
srmB STY2836 ATP-dependent RNA helicase SrmBchromosome CDS2698505 1335 + 0.548315
ssB STY4536 single-strand DNA-binding proteinchromosome CDS4422151 537 + 0.540037
ssb STY4451 single-strand DNA-binding proteinchromosome CDS4321410 531 + 0.59322
tag STY4160 3-methyladenine DNA glycosylase I, constitutivechromosome CDS4019343 582 - 0.517182
tatD STY3583 putative deoxyribonucleasechromosome CDS3436587 783 - 0.541507
tnpA STY3234 transposase for insertion sequence element IS200chromosome CDS3099690 459 - 0.459695
tnpA STY4765 transposase for insertion sequence element is200chromosome CDS4622105 459 - 0.459695
tnpA STY3154 transposase for insertion sequence element IS200chromosome CDS3026477 459 - 0.457516
tnpA STY3140 transposase for insertion sequence element IS200chromosome CDS3013615 459 - 0.459695
tnpA STY3224 transposase for insertion sequence element IS200chromosome CDS3092099 459 - 0.459695
tnpA STY0267 transposase for insertion sequence element IS200chromosome CDS280088 459 - 0.457516
tnpA STY1379 transposase for insertion sequence element IS200chromosome CDS1333722 459 - 0.457516
tnpA STY1895 transposase for insertion sequence element IS200chromosome CDS1791357 459 - 0.459695
tnpA STY2707 transposase for insertion sequence element IS200chromosome CDS2539538 459 - 0.453159
tnpA STY0500 transposase for insertion sequence element IS200chromosome CDS507385 459 + 0.45098
tnpA STY2640 transposase for insertion sequence element IS200chromosome CDS2475976 459 - 0.459695
tnpA STY0256 transposase for insertion sequence element IS200chromosome CDS271076 459 + 0.455338
tnpA STY0657 transposase for insertion sequence element IS200chromosome CDS657246 459 + 0.457516
tnpA STY3261 transposase for insertion sequence element is200chromosome CDS3122530 459 + 0.459695
tnpA STY0874 transposase for insertion sequence element is200chromosome CDS864041 459 + 0.457516
tnpA STY1844 transposase for insertion sequence element IS200chromosome CDS1759921 459 - 0.457516
tnpA STY1580 transposase for insertion sequence element IS200chromosome CDS1529647 459 - 0.459695
tnpA STY3706 transposasechromosome CDS3550557 414 + 0.461353
tnpA STY0437 transposase for insertion sequence element is200chromosome CDS446265 459 + 0.459695
tnpA STY1114 transposase for insertion sequence element is200chromosome CDS1085337 459 + 0.457516
tnpA STY1280 transposase for insertion sequence element IS200chromosome CDS1235316 459 + 0.457516
tnpA STY1794 transposase for insertion sequence element IS200chromosome CDS1715544 459 - 0.459695
tnpA HCM1.169 transposasepHCM1 CDS122925 2973 + 0.60444
tnpA STY1418 transposase for insertion sequence element IS200chromosome CDS1367421 459 + 0.459695
tnpA STY1108 transposase for insertion sequence element IS200chromosome CDS1082125 459 + 0.457516
tnpA STY2497 transposase for insertion sequence element IS200chromosome CDS2330729 459 - 0.459695
tnpA STY1225 transposase for insertion sequence element IS200chromosome CDS1178594 459 + 0.459695
tnpR HCM1.168 resolvasepHCM1 CDS122365 558 + 0.611111
topA STY1336 DNA topoisomerase Ichromosome CDS1293319 2598 + 0.54157
topB STY1816 DNA topoisomerase IIIchromosome CDS1734647 1950 - 0.56
topB STY4530 DNA topoisomerase Ichromosome CDS4418728 1995 + 0.528822
trhI HCM1.107 putative DNA helicasepHCM1 CDS82288 1785 + 0.442017
umuC STY2205 DNA polymerase IVchromosome CDS2043481 1269 - 0.544523
ung STY2840 uracil-DNA glycosylasechromosome CDS2702208 690 + 0.553623
uvrA STY4450 excinuclease ABC subunit Achromosome CDS4318337 2826 - 0.573248
uvrB STY0831 excinuclease ABC subunit Bchromosome CDS829029 2022 + 0.553907
uvrC STY2154 excinuclease ABC subunit Cchromosome CDS2000644 1833 - 0.534643
uvrD STY3608 DNA helicase IIchromosome CDS3461790 2163 - 0.577439
vsr STY2199 patch repair proteinchromosome CDS2037487 471 - 0.56051
wcaH STY2319 putative O-antigen biosynthesis proteinchromosome CDS2149116 480 - 0.602083
xerC STY3610 tyrosine recombinasechromosome CDS3464804 903 - 0.566999
xerD STY3200 tyrosine recombinasechromosome CDS3066947 897 - 0.530658
xni STY3111 exonuclease IXchromosome CDS2979135 816 + 0.556373
xseA STY2753 exodeoxyribonuclease VII large subunitchromosome CDS2590945 1350 + 0.582963
xseB STY0463 exodeoxyribonuclease VII small subunitchromosome CDS469625 243 - 0.54321
xthA STY1812 exodeoxyribonuclease IIIchromosome CDS1731505 807 + 0.521685
yafM STY4922 hypothetical proteinchromosome CDS4782631 486 + 0.485597
ybaV STY0495 hypothetical proteinchromosome CDS502837 375 + 0.522667
ybaZ STY0510 putative methylated-DNA methyltransferasechromosome CDS516818 390 - 0.558974
ycaJ STY0960 conserevd hypothetical proteinchromosome CDS952706 1344 + 0.568452
yejH STY2460 putative helicasechromosome CDS2290935 1761 + 0.569563
yffH STY2714 hypothetical proteinchromosome CDS2547296 576 - 0.487847
yhdJ STY3566 putative adenine-specific DNA-modification methylasechromosome CDS3410246 885 + 0.456497
yhhF STY4239 hypothetical proteinchromosome CDS4105054 597 - 0.564489
yibL STY4107 hypothetical proteinchromosome CDS3968090 363 - 0.506887
yraN STY3448 hypothetical proteinchromosome CDS3292494 396 + 0.558081
yrdD STY4394 hypothetical proteinchromosome CDS4254294 543 + 0.528545
yrfE STY4302 putative NUDIX hydrolasechromosome CDS4180698 597 + 0.522613