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2024-05-18 10:34:17

Gene list

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COG category: Transcription
Organism: Salmonella enterica subsp. enterica serovar Typhi str. CT18, CT18

Number of genes found: 342

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Salmonella enterica subsp. enterica serovar Typhi str. CT18, CT18
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA STY1685 putative TetR-family transcriptional regulatorchromosome CDS1612050 600 + 0.551667
NA HCM1.248 putative transcriptional regulatorpHCM1 CDS183095 126 + 0.420635
NA STY1106 putative transcriptional regulator (pseudogene)chromosome CDS1081781 774 + 0.54522
NA STY4005 putative DNA-binding proteinchromosome CDS3869336 324 - 0.481481
NA STY4100 putative lacI family transcriptional regulator regulatorchromosome CDS3957949 1056 + 0.546402
NA STY3802 putative GntR-family regulatory proteinchromosome CDS3665690 723 - 0.50899
NA STY4164 putative lacI-family transcriptional regulatorchromosome CDS4022959 1008 - 0.590278
NA STY1466 putative regulatory proteinchromosome CDS1415872 1425 + 0.527719
NA STY3093 hypothetical proteinchromosome CDS2957978 357 - 0.456583
NA STY3037 possible LysR-family transcriptional regulatorchromosome CDS2905042 933 + 0.550911
NA STY3352 possible AraC-family transcriptional regulatorchromosome CDS3196819 867 - 0.576701
NA STY3293 LysR-family transcriptional regulatorchromosome CDS3139940 684 + 0.440058
NA HCM2.0076c hypothetical proteinpHCM2 CDS64553 669 - 0.559043
NA STY1163 putative transcriptional regulatorchromosome CDS1125366 882 - 0.495465
NA HCM2.0077c hypothetical proteinpHCM2 CDS65221 699 - 0.532189
NA STY1446 putative regulatory proteinchromosome CDS1398335 792 - 0.516414
NA STY1855 putative transcriptional regulatorchromosome CDS1764926 849 - 0.462898
NA STY0377 possible transmembrane regulatorchromosome CDS388659 744 + 0.395161
NA STY3521 transcriptional regulator NanRchromosome CDS3363658 792 - 0.525253
NA STY1094 hypothetical proteinchromosome CDS1072136 606 + 0.5
NA STY1477 putative regulatory proteinchromosome CDS1428801 666 + 0.46997
NA STY0036 putative transcriptional regulator (lysR family)chromosome CDS33368 996 + 0.384538
NA STY1856 putative regulatory proteinchromosome CDS1765843 594 - 0.367003
NA STY2065 putative cro repressorchromosome CDS1924564 243 - 0.444444
NA STY3547 probable LysR-family transcriptional regulatorchromosome CDS3386896 930 + 0.535484
NA STY0730 lysR-family transcriptional regulatorchromosome CDS731339 927 - 0.563107
NA STY2605 putative DNA-binding proteinchromosome CDS2441517 249 + 0.493976
NA STY4292 putative transcription accessory proteinchromosome CDS4167138 2331 - 0.58387
NA STY0186 putative transcriptional regulatorchromosome CDS195592 768 + 0.548177
NA STY4822 protein kinasechromosome CDS4685181 1077 - 0.363045
NA STY2510 putative transcriptional regulatorchromosome CDS2344196 879 + 0.47554
NA STY0159 putative lysR-family transcriptional regulatorchromosome CDS164472 942 + 0.516985
NA HCM2.0045c hypothetical proteinpHCM2 CDS34153 360 - 0.525
NA STY1951 putative ATP-dependent helicasechromosome CDS1840118 1911 - 0.561486
NA STY4515 araC family regulatory proteinchromosome CDS4405353 876 - 0.355023
NA STY2575 putative transcriptional regulatorchromosome CDS2412405 1020 + 0.554902
NA STY3944 putative LysR-family transcriptioanl regulatorchromosome CDS3811353 909 - 0.542354
NA STY1020 putative DNA-binding proteinchromosome CDS1014982 405 - 0.45679
NA STY1253 putative TetR-family regulatory proteinchromosome CDS1206213 636 - 0.537736
NA HCM1.207c hypothetical proteinpHCM1 CDS155387 378 - 0.484127
NA STY3249 hypothetical proteinchromosome CDS3113788 564 + 0.52305
NA STY4900 conserved hypothetical regulatory proteinchromosome CDS4762682 726 + 0.435262
NA STY2066 putative regulatorchromosome CDS1924903 420 + 0.430952
NA STY4154 putative DNA-binding proteinchromosome CDS4013051 408 - 0.468137
NA STY3708 transcriptional regulator HdfRchromosome CDS3551580 837 + 0.514934
NA STY2429 putative DNA-binding proteinchromosome CDS2258645 390 - 0.523077
NA STY1514 putative regulatory proteinchromosome CDS1470680 489 - 0.474438
NA STY1537 putative regulatory proteinchromosome CDS1491328 873 + 0.56701
NA STY0381 possible transcriptionl regulatorchromosome CDS391048 528 + 0.407197
NA STY4867 probable transcriptional activatorchromosome CDS4729080 909 - 0.524752
NA HCM1.87 putative plasmid partition proteinpHCM1 CDS57992 1008 + 0.39881
NA STY3335 probable AraC-family trancriptional regulatory proteinchromosome CDS3178727 921 - 0.511401
NA STY4812 putative acetyltransferasechromosome CDS4671074 516 - 0.521318
NA STY1576 putative regulatory proteinchromosome CDS1525912 1161 - 0.515935
NA STY4787 putative BglB-family transcriptional antiterminatorchromosome CDS4645474 1974 + 0.539007
NA STY2996 AraC-family transcriptional regulatorchromosome CDS2869850 930 + 0.403226
NA STY4819 regulatory proteinchromosome CDS4680830 999 - 0.500501
NA STY3888 hypothetical 20.8 kDa protein in rbsr-rrsc intergenic regionchromosome CDS3749553 705 + 0.507801
NA STY4801 putative transcriptional regulatorchromosome CDS4661211 489 - 0.474438
NA STY2917 putative transcriptional regulatorchromosome CDS2798936 300 + 0.51
NA STY1393 putative transcriptional regulatorchromosome CDS1345254 852 - 0.38615
NA STY3538 possible GntR-family transcriptional regulatorchromosome CDS3379525 630 - 0.493651
NA STY1005 putative transcriptional regulatorchromosome CDS1003596 462 - 0.484848
NA STY0035 hypothetical proteinchromosome CDS32549 450 - 0.368889
NA HCM2.0129c hypothetical proteinpHCM2 CDS102799 495 - 0.519192
NA STY3165 possible regulatory proteinchromosome CDS3037910 864 - 0.550926
NA STY1024 putative DNA-binding proteinchromosome CDS1017923 348 + 0.545977
NA STY0017 hypothetical proteinchromosome CDS17049 444 - 0.382883
NA HCM1.244c putative transcriptional regulatorpHCM1 CDS179823 687 - 0.417758
NA STY3997 putative GntR-family transcriptional regulatorchromosome CDS3863614 744 + 0.409946
NA STY3461 ATP-dependent RNA helicase (dead-box protein)chromosome CDS3301996 1941 - 0.573931
NA STY3516 N-acetylmannosamine kinasechromosome CDS3359426 876 - 0.593607
NA STY0448 putative deoR-family transcriptional regulatorchromosome CDS457903 693 + 0.522367
NA STY4779 hypothetical proteinchromosome CDS4640018 339 + 0.545723
NA HCM1.58c putative DNA-binding proteinpHCM1 CDS36134 1158 - 0.495682
NA STY3487 hypothetical proteinchromosome CDS3330734 294 - 0.496599
NA STY0648 hypothetical proteinchromosome CDS650170 618 - 0.504854
NA STY2278 putative transcriptional regulatorchromosome CDS2104261 915 - 0.527869
NA STY1730 putative transcriptional regulatorchromosome CDS1650681 729 + 0.539095
NA STY4843 putative gerE-family regulatory proteinchromosome CDS4702910 351 + 0.566952
NA STY1578 putative regulatory proteinchromosome CDS1527260 900 - 0.564444
NA HCM2.0100c hypothetical proteinpHCM2 CDS79214 642 - 0.538941
NA STY0876 transcriptional regulator (iron dependant repressor family)chromosome CDS866783 474 + 0.523207
NA STY2591 putative transcriptional regulatorchromosome CDS2427893 1428 + 0.521709
NA STY3762 putative GntR-family regulatory proteinchromosome CDS3624532 1482 + 0.602564
NA STY4514 putative GerE family regulatory proteinchromosome CDS4405069 288 - 0.295139
NA STY0562 hypothetical lysR-family transcriptional regulatorchromosome CDS568074 927 - 0.531823
NA STY0622 putative tetR-family transcriptional regulatorchromosome CDS622264 582 - 0.525773
NA STY4823 protein kinasechromosome CDS4686254 1074 - 0.349162
NA STY4468 lysR family regulatory proteinchromosome CDS4354511 888 - 0.558559
NA STY0395 AraC-family transcriptional regulatorchromosome CDS403089 1005 + 0.58209
NA STY1991 putative acetyltransferasechromosome CDS1876603 420 - 0.42381
NA STY1459 putative DNA-binding proteinchromosome CDS1409479 537 + 0.528864
NA STY3988 putative DeoR-family transcriptional regulatorchromosome CDS3853107 786 - 0.519084
NA HCM1.63c hypothetical proteinpHCM1 CDS40516 1077 - 0.389972
NA STY1157 putative transcriptional regulatorchromosome CDS1116598 639 + 0.543036
NA STY2522 putative transcriptional regulatorchromosome CDS2357030 783 - 0.508301
NA STY4668 hypothetical proteinchromosome CDS4530511 489 + 0.591002
NA STY4264 putative ribokinasechromosome CDS4128092 1215 - 0.417284
NA STY3156 possible regulatory proteinchromosome CDS3028619 1023 + 0.568915
NA STY4518 Putative acetyltransferasechromosome CDS4407323 492 + 0.567073
NA STY4201 gntR family regulatory proteinchromosome CDS4068168 720 + 0.4875
NA STY4412 deoR family regulatory proteinchromosome CDS4279074 759 - 0.450593
NA HCM2.0078 putative helicasepHCM2 CDS65984 1560 + 0.514744
NA STY0038 putative transcriptional regulatorchromosome CDS34511 306 - 0.382353
NA STY2410 putative transcriptional regulatorchromosome CDS2242465 909 + 0.546755
NA STY4058 putative regulatory proteinchromosome CDS3918961 903 + 0.535991
NA STY1521 putative regulatory proteinchromosome CDS1477754 792 - 0.467172
NA STY4901 conserved hypothetical regulatory proteinchromosome CDS4763416 627 + 0.497608
NA STY1400 conserved hypothetical DNA-binding proteinchromosome CDS1352022 603 + 0.505804
NA STY1839 putative transcriptional regulatorchromosome CDS1756268 795 - 0.549686
NA STY0703 putative sigma-54 dependent transcriptional regulatorchromosome CDS699294 1929 + 0.498186
NA STY3044 DeoR-family trancriptional regulatorchromosome CDS2911407 765 + 0.559477
NA STY1390 putative transcriptional regulatorchromosome CDS1342585 591 + 0.57022
NA STY4584 hypothetical proteinchromosome CDS4460652 615 + 0.538211
NA STY3354 probable two-component system response regulator.chromosome CDS3198301 660 + 0.554545
NA STY3027 hypothetical proteinchromosome CDS2897992 528 + 0.471591
NA STY0478 hypothetical proteinchromosome CDS483689 285 + 0.410526
NA STY3832 putative DNA-binding proteinchromosome CDS3691934 567 - 0.589065
NA STY1386 putative transcriptional regulatorchromosome CDS1339652 906 + 0.545254
NA STY0014 putative regulatory proteinchromosome CDS15020 948 + 0.410338
NA STY1260 putative ROK-family proteinchromosome CDS1215333 909 + 0.565457
NA STY3537 possible transcriptional regulatorchromosome CDS3378873 606 - 0.49505
NA STY2374 putative gntR-family transcriptional regulatorchromosome CDS2205062 747 - 0.534137
NA STY3415 possible LysR-family transcriptional regulatorchromosome CDS3257518 897 - 0.567447
NA STY4151 putative acetyltransferasechromosome CDS4011055 486 + 0.493827
NA STY1347 putative regulatory proteinchromosome CDS1306046 753 - 0.498008
NA STY1551 putative regulatory proteinchromosome CDS1503716 687 + 0.508006
NA STY1490 putative regulatory proteinchromosome CDS1446547 579 - 0.57513
NA STY2660 putative transcriptional regulatorchromosome CDS2497378 927 - 0.568501
NA STY4118 putative transcriptional regulatorchromosome CDS3982461 813 + 0.546125
NA STY4828 phage DNA binding proteinchromosome CDS4690849 324 + 0.540123
NA STY4115 putative sugar kinasechromosome CDS3977536 882 - 0.566893
NA STY4265 putative acetyltransferasechromosome CDS4129571 489 - 0.546012
NA STY2821 putative transcriptional regulatorchromosome CDS2684813 912 + 0.432018
NA STY2061 hypothetical proteinchromosome CDS1921742 813 - 0.501845
aac STY1445 aminoglycoside 6'-N-acetyltransferasechromosome CDS1397817 519 - 0.495183
acT STY0950 hypothetical transcriptional activatorchromosome CDS939882 912 + 0.58114
acrR STY0521 potential acrAB operon repressorchromosome CDS526616 654 + 0.46789
adiY STY4494 putative AraC family regulatory proteinchromosome CDS4382756 762 - 0.43832
allR STY0564 negative regulator of allantoin and glyoxylate utilization operonschromosome CDS569787 819 + 0.544567
araC STY0121 arabinose operon regulatory proteinchromosome CDS123055 846 + 0.536643
arcA STY4947 global response regulatorchromosome CDS4806975 717 - 0.521618
argR STY3540 arginine repressorchromosome CDS3381626 471 + 0.498938
asnC STY3902 regulatory proteinchromosome CDS3764066 459 + 0.498911
baeR STY2344 putative two-component system response regulatorchromosome CDS2182500 723 + 0.532503
cI STY4644 phage repressor protein cIchromosome CDS4505609 633 + 0.43128
cI STY3660 repressor proteinchromosome CDS3516918 570 - 0.396491
cII STY4673 transcriptional regulatory proteinchromosome CDS4537312 222 + 0.59009
cadC STY2804 transcriptional activator cadCchromosome CDS2660730 1545 + 0.476375
celD STY1798 putative cel operon repressorchromosome CDS1718435 843 - 0.431791
citB STY0061 transcriptional regulatory protein citbchromosome CDS61103 687 - 0.484716
cobB STY1261 NAD-dependent deacetylasechromosome CDS1216368 714 + 0.536415
copR STY1128 response regulatorchromosome CDS1094093 747 - 0.502008
cpxR STY3812 two-component response regulatory proteinchromosome CDS3674986 699 + 0.546495
creB STY4935 putative two-component response regulatorchromosome CDS4795846 690 + 0.57971
csgD STY1179 putative regulatory proteinchromosome CDS1140027 627 - 0.403509
csiE STY2800 stationary phase inducible protein CsiEchromosome CDS2655185 1278 + 0.547731
cspA STY4153 cold shock proteinchromosome CDS4012626 213 - 0.469484
cspB STY2204 cold shock proteinchromosome CDS2042823 213 - 0.42723
cspC STY1967 cold shock-like protein CspCchromosome CDS1857152 210 - 0.471429
cspD STY0940 cold shock-like protein CspDchromosome CDS933501 222 - 0.518018
cspE STY0678 cold shock protein Echromosome CDS677679 210 + 0.438095
cspH STY1881 putative cold shock proteinchromosome CDS1782934 213 + 0.464789
cueR STY0545 copper efflux regulatorchromosome CDS553780 417 + 0.513189
cysB STY1337 transcriptional regulator for cysteine regulonchromosome CDS1296327 975 + 0.518974
cytR STY3776 transcriptional repressorchromosome CDS3642207 1026 + 0.534113
dcuR STY4501 two-component response regulatorchromosome CDS4394294 720 - 0.490278
deoR STY0897 deoxyribose operon repressorchromosome CDS891157 759 - 0.517787
dpiA STY0675 transcriptional regulator CriRchromosome CDS674421 681 + 0.53304
dsdC STY3979 D-serine deaminase activatorchromosome CDS3845856 924 + 0.528139
ecnR STY4697 transcriptional regulatory proteinchromosome CDS4557150 588 - 0.462585
emrR STY2939 putative transcriptional regulatorchromosome CDS2814016 531 + 0.487759
fadR STY1934 fatty acid metabolism regulatorchromosome CDS1827491 720 - 0.522222
fimW STY0600 fimbriae w proteinchromosome CDS604664 597 - 0.413735
fimZ STY0596 probable transcriptional regulator (FimXZ protein)chromosome CDS602214 633 - 0.407583
fis STY3565 DNA-binding protein Fischromosome CDS3409864 297 + 0.464646
flgM STY1211 negative regulator of flagellin synthesis (anti-sigma factor)chromosome CDS1167321 294 - 0.510204
fliA STY2164 flagellar biosynthesis sigma factor FliAchromosome CDS2008974 720 - 0.547222
fruR STY0138 fructose repressorchromosome CDS139751 1005 + 0.564179
fucR STY3119 l-fucose operon activatorchromosome CDS2987534 711 + 0.499297
galR STY3155 galactose operon repressorchromosome CDS3027580 1029 + 0.560739
galS STY2425 mgl repressor and galactose ultrainduction factorchromosome CDS2254472 1023 - 0.557185
gatR STY3445 galactitol utilization operon repressorchromosome CDS3288627 774 + 0.505168
gcvA STY3122 regulatory protein for glycine cleavage pathwaychromosome CDS2989810 918 - 0.503268
glpR STY4280 glycerol-3-phosphate regulon repressorchromosome CDS4150139 759 + 0.536232
gntR STY4268 gluconate utilization operon repressorchromosome CDS4132749 996 + 0.575301
greA STY3477 transcription elongation factor GreAchromosome CDS3322453 477 - 0.509434
greB STY4293 transcription elongation factor GreBchromosome CDS4169567 474 - 0.516878
hepA STY0111 ATP-dependent helicase HepAchromosome CDS109800 2907 - 0.570347
hexR STY2095 putative hex-regulon repressorchromosome CDS1947124 870 + 0.511494
hpaA STY1142 4-hydroxyphenylacetate 3-monooxygenase operon regulatory proteinchromosome CDS1105511 897 + 0.513935
hpcR STY1132 homoprotocatechuate degradative operon repressorchromosome CDS1097595 441 - 0.526077
hutC STY0822 histidine utilization repressorchromosome CDS818643 726 + 0.566116
hypB STY2977 hydrogenase isoenzyme formation protein HypBchromosome CDS2853114 873 + 0.578465
iagA STY2999 invasion protein regulatorchromosome CDS2871866 1662 + 0.430205
iciA STY3220 chromosome replication initiation inhibitor proteinchromosome CDS3088114 894 + 0.577181
iclR STY4404 acetate operon repressorchromosome CDS4269601 825 - 0.579394
ilvY STY3649 LysR-family regulatory protein for ilvC expressionchromosome CDS3506373 888 + 0.585586
invF STY3022 possible AraC-family regulatory proteinchromosome CDS2895282 651 - 0.460829
kdgR STY1972 transcriptional regulator KdgRchromosome CDS1859271 792 - 0.496212
kdgR STY3251 probable global regulatory proteinchromosome CDS3114814 687 - 0.573508
kdpE STY0743 KDP operon transcriptional regulatory proteinchromosome CDS742195 678 - 0.564897
lctR STY4103 putative L-lactate dehydrogenase operon regulatorchromosome CDS3960797 777 - 0.579151
leuO STY0134 leucine transcriptional activatorchromosome CDS135983 945 + 0.48254
lexA STY4433 LexA repressorchromosome CDS4304371 609 + 0.545156
lrhA STY2560 NADH dehydrogenase operon transcriptional regulatorchromosome CDS2395148 939 - 0.521832
lrp STY0957 leucine-responsive regulatory proteinchromosome CDS947280 495 + 0.488889
lysR STY3158 transcriptional activator protein LysRchromosome CDS3031031 936 + 0.586538
malT STY4281 transcriptional regulator MalTchromosome CDS4150971 2706 - 0.555063
marA STY1541 multiple antibiotic resistance protein MarAchromosome CDS1494880 435 + 0.455172
marR STY1540 multiple antibiotic resistance protein MarRchromosome CDS1494534 378 + 0.489418
melR STY4496 melibiose operon regulatory proteinchromosome CDS4386314 933 - 0.5209
merD HCM1.159 putative mercuric resistance operon coregulatorpHCM1 CDS117909 366 + 0.672131
merD HCM1.230c putative mercuric resistance operon coregulatorpHCM1 CDS171595 363 - 0.69697
merR HCM1.235 putative mercuric resistance operon regulatory proteinpHCM1 CDS174890 435 + 0.595402
merR HCM1.151c putative mercuric resistance operon regulatory proteinpHCM1 CDS114531 456 - 0.607456
metJ STY3770 transcriptional repressor protein MetJchromosome CDS3635967 318 + 0.518868
metR STY3595 trans-activator of metE and metHchromosome CDS3449980 954 + 0.584906
mfd STY1256 transcription-repair coupling factor (TrcF)chromosome CDS1208383 3447 - 0.56832
mtlR STY4109 mannitol operon repressor (mannitol repressor protein)chromosome CDS3968959 591 - 0.534687
mucA HCM1.252 putative DNA-repair modulatorpHCM1 CDS185798 435 + 0.521839
nagC STY0720 N-acetylglucosamine repressorchromosome CDS717672 1221 - 0.535627
narL STY1285 nitrate/nitrite response regulator protein NarLchromosome CDS1239520 651 - 0.533026
narP STY2472 nitrate/nitrite response regulator protein NarPchromosome CDS2303653 648 + 0.524691
nhaR STY0048 transcriptional activator protein NhaRchromosome CDS47414 900 + 0.506667
nikR STY4227 nickel responsive regulatorchromosome CDS4094257 402 - 0.547264
nlp STY3485 Ner-like regulatory proteinchromosome CDS3329075 288 + 0.503472
nusA STY3468 transcription elongation factor NusAchromosome CDS3312124 1503 - 0.525615
nusB STY0457 transcription antitermination protein NusBchromosome CDS463736 420 + 0.52619
nusG STY3737 transcription antitermination protein NusGchromosome CDS3588262 546 - 0.545788
ompR STY4294 osmolarity response regulatorchromosome CDS4170266 720 + 0.565278
oxyR STY3749 hydrogen peroxide-inducible regulon activatorchromosome CDS3607204 918 - 0.56427
pdhR STY0174 transcriptional regulator of pyruvate dehydrogenase complexchromosome CDS178463 765 + 0.568627
pduD STY2246 diol dehydratase medium subunitchromosome CDS2076210 675 + 0.568889
phnO STY4486 putative acetyltransferasechromosome CDS4374136 465 - 0.490323
phnR STY0469 probable regulator of 2-aminoethylphosphonate uptake and metabolism operonchromosome CDS475558 720 - 0.591667
phoB STY0432 phosphate regulon transcriptional regulatory protein PhoBchromosome CDS442289 690 + 0.547826
phoP STY1271 transcriptional regulatory protein PhoP, regulator of virulence determinantschromosome CDS1228174 675 - 0.512593
pmrA STY4491 two-component response regulatorchromosome CDS4378837 669 - 0.539611
pocR STY2241 pdu/cob regulatory protein PocRchromosome CDS2070973 915 - 0.460109
prpR STY0399 propionate catabolism operon regulatory proteinchromosome CDS407663 1626 - 0.555351
pspA STY1371 phage shock protein Achromosome CDS1327374 669 + 0.512706
pspC STY1373 phage shock protein Cchromosome CDS1328326 360 + 0.522222
pspF STY1370 psp operon transcriptional activator PspFchromosome CDS1326223 981 - 0.545362
ptsJ STY2674 putative transcriptional regulatorchromosome CDS2509322 1293 + 0.589327
purR STY1692 purine nucleotide synthesis repressorchromosome CDS1617786 1026 + 0.542885
ramA STY0624 transcriptional activator RamAchromosome CDS623134 342 + 0.502924
rbsR STY3891 ribose operon repressorchromosome CDS3751662 999 - 0.527528
rcsA STY2190 colanic acid capsullar biosynthesis activation protein Achromosome CDS2031045 624 + 0.386218
rcsB STY2495 regulator of capsule synthesis B componentchromosome CDS2326944 651 + 0.493088
recG STY4048 ATP-dependent DNA helicasechromosome CDS3909336 2082 - 0.582133
relA STY3094 GTP pyrophosphokinasechromosome CDS2958419 2235 - 0.5566
rfaH STY3582 transcriptional activator RfaHchromosome CDS3436091 489 + 0.490798
rhaR STY3824 L-rhamnose operon transcriptional activatorchromosome CDS3684525 849 - 0.499411
rhaS STY3825 L-rhamnose operon regulatory proteinchromosome CDS3685526 837 - 0.53644
rhlB STY3640 ATP-dependent RNA helicasechromosome CDS3496937 1266 + 0.546604
rhlE STY0855 putative ATP-dependent RNA helicase rhlEchromosome CDS849385 1368 + 0.584795
rho STY3638 transcription termination factor Rhochromosome CDS3494786 1260 - 0.529365
rnb STY1350 exoribonuclease IIchromosome CDS1309430 1935 - 0.557106
rncS STY2827 ribonuclease IIIchromosome CDS2688914 681 - 0.528634
rnk STY0664 nucleoside diphosphate kinase regulatorchromosome CDS664173 411 - 0.583942
rnr STY4725 ribonuclease R (RNase R)chromosome CDS4587425 2439 + 0.551455
rob STY4933 right origin-binding proteinchromosome CDS4794279 870 - 0.534483
rof STY0262 ROF proteinchromosome CDS277638 255 - 0.443137
rpoA STY4383 DNA-directed RNA polymerase alpha subunitchromosome CDS4245212 990 + 0.522222
rpoB STY3732 DNA-directed RNA polymerase beta subunitchromosome CDS3581277 4029 - 0.541822
rpoC STY3731 DNA-directed RNA polymerase beta' subunitchromosome CDS3576977 4224 - 0.546165
rpoD STY3390 RNA polymerase sigma factorchromosome CDS3233766 1983 + 0.528492
rpoE STY2833 RNA polymerase sigma-70 factorchromosome CDS2695031 576 - 0.512153
rpoH STY4243 RNA polymerase sigma factorchromosome CDS4109216 855 + 0.540351
rpoN STY3499 DNA-directed RNA polymerase subunit Nchromosome CDS3338936 1434 + 0.540446
rpoS STY3049 RNA polymerase sigma factorchromosome CDS2915077 993 - 0.523666
rpoZ STY4051 DNA-directed RNA polymerase omega subunitchromosome CDS3914247 276 - 0.536232
rsD STY3720 putative regulatory proteinchromosome CDS3569296 489 + 0.492843
rstA STY1647 putative two-component response regulatorchromosome CDS1575105 732 + 0.530055
sdiA STY2158 cell-division regulatory proteinchromosome CDS2003884 723 - 0.489627
sinR STY0341 LysR-family transcriptional regulator SinRchromosome CDS348682 945 + 0.394709
sirA STY2155 response regulatorchromosome CDS2002473 657 - 0.512938
slmA STY4062 nucleoid occlusion proteinchromosome CDS3922416 597 - 0.517588
slyA STY3045 putative regulatory proteinchromosome CDS2912190 405 - 0.530864
slyA STY1678 transcriptional regulator SlyAchromosome CDS1606411 435 - 0.491954
sopD STY3073 possible secreted proteinchromosome CDS2935978 954 + 0.419287
soxR STY4464 SoxR proteinchromosome CDS4349505 459 + 0.551198
soxS STY4463 regulatory protein SoxSchromosome CDS4349095 324 - 0.506173
spoT STY4050 guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase; CG Site No. 156chromosome CDS3912117 2112 - 0.536458
sprA STY2988 possible AraC-family transcriptional regulatorchromosome CDS2864110 888 - 0.363739
sprB STY2987 possible AraC-family transcriptional regulatorchromosome CDS2862970 756 - 0.451058
srlM STY2957 glucitol operon activator proteinchromosome CDS2833969 360 + 0.541667
srlR STY2959 glucitol operon repressorchromosome CDS2834527 774 + 0.498708
srmB STY2836 ATP-dependent RNA helicase SrmBchromosome CDS2698505 1335 + 0.548315
ssrB STY1729 putative two-component response regulatorchromosome CDS1649864 639 + 0.402191
tctD STY2904 transcriptional regulatorchromosome CDS2786824 675 - 0.548148
tdcA STY3428 TDC operon transcriptional activatorchromosome CDS3269977 939 - 0.447284
tetR HCM1.243 tetracycline repressor proteinpHCM1 CDS179219 627 + 0.401914
tinR STY0349 transcriptional regulatorchromosome CDS357131 456 + 0.315789
treR STY4795 trehalose repressorchromosome CDS4654435 948 - 0.549578
trpR STY4930 Trp operon repressorchromosome CDS4792824 327 + 0.550459
tyrR STY1378 transcriptional regulatory protein TyrRchromosome CDS1332068 1542 + 0.53048
uhpA STY3992 Two-component system response regulator proteinchromosome CDS3857652 591 + 0.590525
umuD STY2206 UmuD proteinchromosome CDS2044752 420 - 0.5
uxuR STY4862 uxu operon transcriptional regulatorchromosome CDS4725066 774 + 0.549096
xapR STY2655 xanthosine operon transcriptional regulatorchromosome CDS2493002 885 - 0.502825
xylR STY4136 xylose operon regulatory proteinchromosome CDS3999540 1179 - 0.53011
yaeG STY0232 hypothetical proteinchromosome CDS243080 1158 + 0.544905
yafC STY0277 hypothetical transcriptional regulatorchromosome CDS293718 915 - 0.507104
yafP STY4148 putative acetyltransferasechromosome CDS4010135 468 + 0.41453
yajF STY0426 hypothetical ROK-family proteinchromosome CDS435467 909 + 0.577558
ybaO STY0502 hypothetical transcriptional regulatorchromosome CDS509127 459 + 0.522876
ybdO STY0651 putative lysR-family transcriptional regulatorchromosome CDS652161 903 - 0.389812
ybeF STY0684 lysR-family transcriptional regulatorchromosome CDS680796 954 - 0.506289
ybiH STY0854 hypothetical tetR-family transcriptional regulatorchromosome CDS848481 675 - 0.52
ydeW STY3797 putative regulatory proteinchromosome CDS3662183 960 + 0.503125
ydhB STY1693 putative transcriptional regulatorchromosome CDS1618808 933 - 0.564845
yehT STY2388 putative two-component system response regulatorchromosome CDS2219326 720 - 0.505556
yehV STY2390 putative transcriptional regulatorchromosome CDS2221950 732 + 0.540984
yeiE STY2436 putative transcriptional regulatorchromosome CDS2266905 864 - 0.549769
yejH STY2460 putative helicasechromosome CDS2290935 1761 + 0.569563
yfeG STY2691 ethanolamine operon transcriptional regulatorchromosome CDS2524275 1053 - 0.545109
yfhH STY2818 putative transcriptional regulatorchromosome CDS2681675 849 + 0.570082
yfhP STY2790 hypothetical proteinchromosome CDS2646961 495 - 0.553535
ygaA STY2961 anaerobic nitric oxide reductase transcription regulatorchromosome CDS2836255 1521 - 0.594346
ygaE STY2914 putative transcriptional regulatorchromosome CDS2797347 678 + 0.564897
ygjM STY3848 hypothetical proteinchromosome CDS3705233 447 + 0.474273
yhhK STY4247 hypothetical proteinchromosome CDS4111691 384 - 0.5625
yhjB STY4197 hypothetical luxR-family transcriptional regulatorchromosome CDS4063347 603 + 0.477612
yhjC STY4196 hypothetical lysR-family transcriptional regulatorchromosome CDS4061817 903 - 0.540421
yiaC STY4159 putative acetyltransferasechromosome CDS4018925 441 - 0.519274
yiaJ STY4131 putative transcriptional regulatorchromosome CDS3993461 801 + 0.523096
yidZ STY3935 putative LysR-family transcriptional regulatorchromosome CDS3798276 903 - 0.54928
yihW STY3853 putative DeoR-family transcriptional regulatorchromosome CDS3708770 804 - 0.542289
yiiD STY3849 putative acetyltransferasechromosome CDS3705694 990 - 0.547475
yiiF STY3845 putative CopG-family DNA-binding proteinchromosome CDS3703463 249 - 0.48996
yijC STY3747 possible TetR-family trancriptional regulatory proteinchromosome CDS3604987 636 - 0.553459
yijO STY3756 putative AraC-family transcriptional regulatorchromosome CDS3618043 837 + 0.561529
yjaB STY4399 putative acetyltransferasechromosome CDS4262945 438 - 0.488584
yjdC STY4681 putative transcriptional regulatorchromosome CDS4543264 576 - 0.513889
yjeB STY4724 hypothetical proteinchromosome CDS4586962 426 + 0.485915
yjfQ STY4737 probable transcriptional regulatorchromosome CDS4598488 756 - 0.541005
ykgD STY0611 hypothetical araC-family transcriptional regulatorchromosome CDS610886 855 - 0.587134
ytfH STY4760 hypothetical proteinchromosome CDS4617488 387 + 0.565891
zntR STY4386 zinc-responsive transcriptional regulatorchromosome CDS4247111 426 + 0.488263