TitleGenColors Logo
spacer
Home spacerGenomes
spacerMethods
spacerDocumentation spacerContactspacer spacerLeibniz FLI
spacer
QuickSearch
2024-05-18 11:05:32

Gene list

Applied filters:

COG category: Translation, ribosomal structure and biogenesis
Organism: Escherichia coli APEC O1, APEC O1

Number of genes found: 153

Free access
Sort by:

 

Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Escherichia coli APEC O1, APEC O1
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA APECO1_667 spermidine N1-acetyltransferasechromosome CDS1677914 561 + 0.468806
NA APECO1_2646 hypothetical proteinchromosome CDS4312693 258 - 0.395349
NA APECO1_3835 hypothetical proteinchromosome CDS2986880 1113 + 0.530099
NA APECO1_4383 hypothetical proteinchromosome CDS2377933 828 + 0.503623
NA APECO1_2050 hypothetical proteinchromosome CDS5006794 621 - 0.505636
NA APECO1_427 hypothetical proteinchromosome CDS1382921 657 + 0.496195
NA APECO1_168 hypothetical proteinchromosome CDS1127292 960 + 0.517708
alaS APECO1_3829 alanyl-tRNA synthetasechromosome CDS2992939 2631 - 0.538959
ansA APECO1_836 L-asparaginase Ichromosome CDS1864333 1017 + 0.500492
ansB APECO1_3564 L-asparaginase II precursorchromosome CDS3294333 1047 - 0.51958
argS APECO1_926 arginyl-tRNA synthetasechromosome CDS1967921 1734 + 0.530565
asnS APECO1_42 AsnSchromosome CDS990884 1446 - 0.517981
aspS APECO1_916 aspartyl-tRNA synthetasechromosome CDS1956610 1773 - 0.538635
cysS APECO1_1488 cysteinyl-tRNA synthetasechromosome CDS567227 1386 + 0.54329
dbpA APECO1_495 ATP-independent RNA helicase DbpAchromosome CDS1464582 1374 + 0.521106
deaD APECO1_3268 inducible ATP-independent RNA helicasechromosome CDS3598706 1941 - 0.552293
def APECO1_3160 peptide deformylasechromosome CDS3724406 510 + 0.466667
dtd APECO1_2580 D-tyrosyl-tRNA deacylasechromosome CDS4388466 438 + 0.547945
dusB APECO1_3178 tRNA-dihydrouridine synthase Bchromosome CDS3701148 966 + 0.519669
efp APECO1_2242 elongation factor P (EF-P)chromosome CDS4783222 567 + 0.497355
fmt APECO1_3159 methionyl-tRNA formyltransferasechromosome CDS3724930 948 + 0.514768
frr APECO1_1815 ribosome releasing factorchromosome CDS197685 522 + 0.511494
ftsJ APECO1_3253 cell division proteinchromosome CDS3619765 630 - 0.504762
fusA APECO1_3113 elongation factor EF-2chromosome CDS3762183 2115 - 0.507801
glnS APECO1_1384 glutaminyl-tRNA synthetasechromosome CDS691417 1665 + 0.527327
gltX APECO1_4141 glutamyl-tRNA synthetasechromosome CDS2651714 1416 - 0.52613
glyQ APECO1_2890 glycyl-tRNA synthetase subunit alphachromosome CDS4023053 912 - 0.560307
glyS APECO1_2891 glycyl-tRNA synthetase subunit betachromosome CDS4020974 2070 - 0.556039
gshB APECO1_3574 glutathione synthetasechromosome CDS3286625 951 + 0.526814
hemK APECO1_329 protein methyltransferase HemKchromosome CDS1279819 834 + 0.555156
hisS APECO1_4010 histidyl-tRNA synthetasechromosome CDS2799144 1275 - 0.545882
hslR APECO1_3064 ribosome-associated heat shock protein Hsp15chromosome CDS3814793 402 + 0.527363
ileS APECO1_1957 isoleucyl-tRNA synthetasechromosome CDS23899 2817 + 0.544551
infB APECO1_3262 translation initiation factor IF-2chromosome CDS3606077 2673 - 0.530864
ksgA APECO1_1931 dimethyladenosine transferasechromosome CDS54788 822 - 0.537713
lasT APECO1_1977 putative rRNA methyltransferasechromosome CDS5081296 687 + 0.483261
leuS APECO1_14132 leucyl-tRNA synthetasechromosome CDS655652 2724 - 0.529001
lysS APECO1_3637 lysine tRNA synthetase, constitutivechromosome CDS3229418 1518 - 0.525692
lysS APECO1_2324 lysyl-tRNA synthetasechromosome CDS4697611 1518 - 0.476285
map APECO1_1819 methionine aminopeptidasechromosome CDS193754 795 - 0.508176
miaA APECO1_2220 delta(2)-isopentenylpyrophosphate tRNA-adenosine transferasechromosome CDS4806788 951 + 0.528917
miaB APECO1_1402 isopentenyl-adenosine A37 tRNA methylthiolasechromosome CDS669915 1425 - 0.548772
pcnB APECO1_1842 poly(A) polymerase Ichromosome CDS163751 1365 - 0.562637
pheS APECO1_788 phenylalanine tRNA synthetase, alpha subunitchromosome CDS1814772 996 - 0.544177
pheT APECO1_787 phenylalanyl-tRNA synthetase beta chainchromosome CDS1812370 2388 - 0.54397
pnp APECO1_3266 polynucleotide phosphorylase/polyadenylasechromosome CDS3601768 2205 - 0.530612
prfA APECO1_328 peptide chain release factor 1chromosome CDS1278737 1083 + 0.525392
prfB APECO1_3636 peptide chain release factor 2chromosome CDS3230945 882 - 0.534014
prfC APECO1_2006 peptide chain release factor RF-3chromosome CDS5049628 1587 + 0.541903
prfH APECO1_1733 peptide chain release factor-like proteinchromosome CDS286381 699 + 0.542203
prmA APECO1_3179 methylase for 50S ribosomal subunit protein L11chromosome CDS3699938 882 + 0.545351
prmB APECO1_4234 protein-(glutamine-N5) methyltransferasechromosome CDS2552611 1266 - 0.522117
proS APECO1_1793 prolyl-tRNA synthetasechromosome CDS221787 1719 - 0.539849
pth APECO1_320 peptidyl-tRNA hydrolasechromosome CDS1271654 384 - 0.479167
queA APECO1_1605 putative S-adenosylmethionine:tRNA ribosyltransferase-isomerasechromosome CDS440984 1071 + 0.53408
rbfA APECO1_3263 ribosome-binding factor Achromosome CDS3605512 402 - 0.529851
rhlB APECO1_2693 ATP-dependent RNA helicasechromosome CDS4257156 1266 - 0.521327
rhlE APECO1_1293 putative ATP-dependent RNA helicase RhlEchromosome CDS795417 1362 + 0.562408
rimJ APECO1_148 RimJchromosome CDS1107918 585 + 0.494017
rimK APECO1_1241 ribosomal protein S6 modification proteinchromosome CDS854764 903 + 0.55814
rimL APECO1_573 ribosomal-protein-L7/L12-serine acetyltransferasechromosome CDS1561127 540 + 0.433333
rimM APECO1_3925 16S rRNA processing proteinchromosome CDS2904596 552 - 0.487319
rluB APECO1_429 23S rRNA pseudouridylate synthasechromosome CDS1385713 876 + 0.533105
rluD APECO1_3936 23S rRNA pseudouridine synthasechromosome CDS2894256 981 - 0.527013
rluE APECO1_217 23S rRNA pseudouridine synthasechromosome CDS1176666 654 - 0.521407
rne APECO1_166 Rnase Echromosome CDS1123534 3186 - 0.557439
rng APECO1_3198 ribonuclease Gchromosome CDS3678623 1470 - 0.521769
rnpA APECO1_27542 inner membrane protein translocase component YidCchromosome CDS4178858 360 + 0.558333
rph APECO1_2818 ribonuclease PHchromosome CDS4107158 717 - 0.564854
rplB APECO1_3133 50S ribosomal subunit protein L2chromosome CDS3741268 822 - 0.525547
rplC APECO1_3131 50S ribosomal subunit protein L3chromosome CDS3743022 630 - 0.514286
rplD APECO1_3132 50S ribosomal protein L4chromosome CDS3742406 606 - 0.531353
rplE APECO1_3141 50S ribosomal subunit protein L5chromosome CDS3737624 540 - 0.498148
rplF APECO1_3144 50S ribosomal subunit protein L6chromosome CDS3736332 534 - 0.520599
rplI APECO1_2190 50S ribosomal subunit protein L9chromosome CDS4833555 450 + 0.497778
rplJ APECO1_2488 50S ribosomal subunit protein L10chromosome CDS4501456 498 + 0.522088
rplM APECO1_3213 50S ribosomal protein L13chromosome CDS3660801 429 - 0.505827
rplN APECO1_3139 50S ribosomal subunit protein L14chromosome CDS3738503 372 - 0.510753
rplO APECO1_3147 50S ribosomal protein L15chromosome CDS3734830 435 - 0.535632
rplP APECO1_3137 50S ribosomal subunit protein L16chromosome CDS3739484 411 - 0.515815
rplQ APECO1_3153 50S ribosomal subunit protein L17chromosome CDS3730341 384 - 0.533854
rplR APECO1_3145 50S ribosomal subunit protein L18chromosome CDS3735969 354 - 0.536723
rplS APECO1_3927 50S ribosomal subunit protein L19chromosome CDS2903407 348 - 0.482759
rplT APECO1_789 50S ribosomal subunit protein L20chromosome CDS1816206 357 - 0.487395
rplV APECO1_3135 50S ribosomal protein L22chromosome CDS3740626 333 - 0.498498
rplX APECO1_3140 50S ribosomal subunit protein L24chromosome CDS3738178 315 - 0.457143
rpsA APECO1_23 RpsAchromosome CDS965475 1674 + 0.512545
rpsB APECO1_1818 30S ribosomal protein S2chromosome CDS194916 726 + 0.513774
rpsC APECO1_3136 30S ribosomal subunit protein S3chromosome CDS3739907 702 - 0.509971
rpsD APECO1_3151 30S ribosomal subunit protein S4chromosome CDS3731780 621 - 0.507246
rpsE APECO1_3146 30S ribosomal subunit protein S5chromosome CDS3735451 504 - 0.498016
rpsF APECO1_2192 30S ribosomal subunit protein S6chromosome CDS4832565 396 + 0.527778
rpsG APECO1_3112 30S ribosomal protein S7chromosome CDS3764394 471 - 0.496815
rpsH APECO1_3143 30S ribosomal subunit protein S8, and regulatorchromosome CDS3736878 393 - 0.501272
rpsI APECO1_3214 30S ribosomal subunit protein S9chromosome CDS3660393 393 - 0.524173
rpsJ APECO1_3130 30S ribosomal subunit protein S10chromosome CDS3743684 312 - 0.551282
rpsK APECO1_3150 30S ribosomal subunit protein S11chromosome CDS3732434 390 - 0.515385
rpsL APECO1_3111 30S ribosomal protein S12chromosome CDS3764961 375 - 0.530667
rpsM APECO1_3149 30S ribosomal subunit protein S13chromosome CDS3732840 357 - 0.518207
rpsN APECO1_3142 30S ribosomal subunit protein S14chromosome CDS3737304 306 - 0.526144
rpsO APECO1_3265 30S ribosomal subunit protein S15chromosome CDS3604150 270 - 0.518519
rpsP APECO1_3924 30S ribosomal subunit protein S16chromosome CDS2905163 309 - 0.511327
rpsQ APECO1_3138 30S ribosomal subunit protein S17chromosome CDS3739039 255 - 0.47451
rpsS APECO1_3134 30S ribosomal protein S19chromosome CDS3740973 279 - 0.491039
rsuA APECO1_4372 16S rRNA pseudouridylate 516 synthasechromosome CDS2392527 696 - 0.533046
rumA APECO1_3746 23S rRNA (uracil-5-)-methyltransferase RumAchromosome CDS3082663 1302 - 0.508449
selB APECO1_2863 selenocysteinyl-tRNA-specific translation factorchromosome CDS4054732 1845 - 0.56748
serS APECO1_1196 seryl-tRNA synthetasechromosome CDS911284 1293 + 0.528229
smpA APECO1_3917 small membrane lipoproteinchromosome CDS2912719 342 + 0.497076
spoU APECO1_2810 tRNA (Guanosine-2'-O-)-methyltransferasechromosome CDS4115843 690 + 0.556522
srmB APECO1_39552 putative transcriptional regulator YfiEchromosome CDS2866971 1335 + 0.544569
sun APECO1_3158 Sun proteinchromosome CDS3725929 1290 + 0.496899
tadA APECO1_3972 tRNA-specific adenosine deaminasechromosome CDS2851434 537 - 0.528864
tdcF APECO1_3311 putative L-PSP (mRNA) endoribonucleasechromosome CDS3558533 438 - 0.520548
tgt APECO1_1604 tRNA-guanine transglycosylasechromosome CDS442109 1128 + 0.513298
thrS APECO1_791 threonine tRNA synthetasechromosome CDS1817455 1929 - 0.493002
trmA APECO1_2498 tRNA (uracil-5-)-methyltransferasechromosome CDS4483892 1101 - 0.502271
trmD APECO1_39262 tRNA (guanine-1-)-methyltransferasechromosome CDS2903796 333 - 0.525526
trmD APECO1_3926 tRNA (guanine-1-)-methyltransferasechromosome CDS2904206 360 - 0.541667
trpS APECO1_3079 tryptophanyl-tRNA synthetasechromosome CDS3798079 1005 - 0.524378
truA APECO1_4246 tRNA pseudouridine synthase Achromosome CDS2539927 813 - 0.555966
truB APECO1_3264 tRNA pseudouridine 5S synthasechromosome CDS3604568 945 - 0.526984
tufA APECO1_3114 translation elongation factor EF-Tuchromosome CDS3760928 1230 - 0.53252
tufA APECO1_2492 translation elongation factor EF-Tuchromosome CDS4497525 1185 + 0.533333
tyrS APECO1_720 tyrosine tRNA synthetasechromosome CDS1737337 1287 - 0.519037
valS APECO1_2136 valyl-tRNA synthetasechromosome CDS4897535 2856 - 0.546219
yadB APECO1_1841 glutamyl-Q tRNA(Asp) synthetasechromosome CDS165208 927 - 0.537217
yadP APECO1_1838 2'-5' RNA ligasechromosome CDS167523 744 - 0.564516
ybjF APECO1_1234 hypothetical RNA methyltransferase YbjFchromosome CDS861314 1128 + 0.54078
ycdK APECO1_101 hypothetical proteinchromosome CDS1057662 387 - 0.537468
ycfB APECO1_215 putative ATPasechromosome CDS1175035 1152 - 0.536458
ychF APECO1_319 putative GTP-binding protein YchFchromosome CDS1270446 1092 - 0.513736
yciH APECO1_442 putative translation initiation factorchromosome CDS1401500 330 + 0.506061
yebU APECO1_889 hypothetical proteinchromosome CDS1928132 1446 + 0.524896
yfhQ APECO1_3993 putative methyltransferasechromosome CDS2821794 741 - 0.547908
yfiF APECO1_39512 tRNA/rRNA methyltransferase YfiFchromosome CDS2871390 372 - 0.556452
ygjO APECO1_3334 putative ribosomal RNA small subunit methyltransferase Dchromosome CDS3534251 1137 - 0.539138
yhbH APECO1_3232 putative sigma-54 modulation proteinchromosome CDS3638763 288 + 0.451389
yibK APECO1_2849 predicted rRNA methylasechromosome CDS4075724 474 + 0.550633
yicN APECO1_2789 hypothetical proteinchromosome CDS4140765 480 - 0.527083
yjbC APECO1_2446 hypothetical proteinchromosome CDS4555334 873 + 0.505155
yjbN APECO1_2423 tRNA-dihydrouridine synthase Achromosome CDS4581380 996 + 0.536145
yjeA APECO1_2234 lysyl-tRNA synthetasechromosome CDS4790136 1008 + 0.521825
yjeJ APECO1_2244 hypothetical proteinchromosome CDS4781048 870 - 0.452874
yjfH APECO1_2212 hypothetical proteinchromosome CDS4816723 732 + 0.554645
yjgF APECO1_2149 hypothetical proteinchromosome CDS4885320 426 - 0.511737
yjiI APECO1_2087 hypothetical proteinchromosome CDS4959685 462 + 0.474026
yjjT APECO1_2055 ribosomal RNA small subunit methyltransferase Cchromosome CDS5000601 1032 - 0.559109
ykgM APECO1_1701 50S ribosomal protein L31 type B-1chromosome CDS324696 267 - 0.460674
yliG APECO1_1258 hypothetical proteinchromosome CDS839526 1326 - 0.522624
yoaB APECO1_867 hypothetical proteinchromosome CDS1901233 393 + 0.51145
yqcB APECO1_3740 tRNA pseudouridine synthasechromosome CDS3091964 783 - 0.542784
yrdC APECO1_3164 putative ribosome maturation factorchromosome CDS3721559 618 - 0.522654