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2024-05-18 10:04:58

Gene list

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COG category: Translation, ribosomal structure and biogenesis
Organism: Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67, SC-B67

Number of genes found: 181

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67, SC-B67
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA SC1139 50S ribosomal protein L32chromosome CDS1255904 174 + 0.528736
NA SC2529 putative cytoplasmic proteinchromosome CDS2694675 669 + 0.442451
NA SC0385 putative periplasmic proteinchromosome CDS430849 501 + 0.379242
NA SC3905 putative periplasmic proteinchromosome CDS4157043 1026 - 0.499025
NA SC3451 putative ribonucleoprotein related-proteinchromosome CDS3636425 1554 - 0.601673
RL15 SC3355 50S ribosomal protein L15chromosome CDS3541809 435 - 0.544828
RL34 SC3757 50S ribosomal protein L34chromosome CDS3984678 141 + 0.531915
RS12 SC3382 30S ribosomal protein S12chromosome CDS3556778 435 - 0.508046
RS21 SC3156 30S ribosomal protein S21chromosome CDS3336129 216 + 0.518519
alaS SC2760 alanyl-tRNA synthetasechromosome CDS2925783 2631 - 0.550361
ansA SC1316 cytoplasmic asparaginase Ichromosome CDS1412784 1089 - 0.525253
ansB SC3046 periplasmic L-asparaginase IIchromosome CDS3224973 1047 - 0.52531
argS SC1916 arginyl-tRNA synthetasechromosome CDS2025177 1734 + 0.54902
asnS SC0957 asparaginyl-tRNA synthetasechromosome CDS1076755 1401 - 0.551035
aspG SC3532 putative L-asparaginasechromosome CDS3728555 1044 - 0.510536
aspS SC1909 aspartyl-tRNA synthetasechromosome CDS2017692 1773 - 0.562888
cafA SC3308 RNase Gchromosome CDS3494582 1470 - 0.528571
cca SC3151 tRNA nucleotidyl transferasechromosome CDS3331296 1242 + 0.588567
cysS SC0576 cysteinyl-tRNA synthetasechromosome CDS643485 1386 + 0.549062
dbpA SC1650 ATP-dependent RNA helicase, stimulated by 23S rRNAchromosome CDS1761471 1374 - 0.547307
deaD SC3221 cysteine sulfinate desulfinasechromosome CDS3402212 1956 - 0.576176
def SC3342 peptide deformylasechromosome CDS3531378 510 + 0.515686
efp SC4213 elongation factor Pchromosome CDS4514071 807 + 0.519207
fmt SC3343 methionyl-tRNA formyltransferasechromosome CDS3531903 948 + 0.548523
frr SC0219 ribosome releasing factorchromosome CDS253137 558 + 0.510753
ftsJ SC3235 Ribosomal RNA large subunit methyltransferase Jchromosome CDS3421468 627 - 0.511962
fusA SC3380 elongation factor EF-2chromosome CDS3554001 2115 - 0.51773
glnS SC0707 glutaminyl-tRNA synthetasechromosome CDS789307 1668 + 0.536571
gltX SC2416 glutamyl-tRNA synthetasechromosome CDS2545890 1416 - 0.550847
glyQ SC3591 glycyl-tRNA synthetase alpha subunitchromosome CDS3795487 912 - 0.557018
glyS SC3590 glycyl-tRNA synthetase beta subunitchromosome CDS3793408 2070 - 0.571498
gshB SC3035 glutathione synthetasechromosome CDS3216430 948 + 0.543249
hemK SC1769 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferasechromosome CDS1885478 834 - 0.58753
hisS SC2519 histidyl-tRNA synthetasechromosome CDS2675551 1275 - 0.560784
ileS SC0040 isoleucyl-tRNA synthetasechromosome CDS48073 2871 + 0.547893
infA SC0907 translation initiation factor IF-1chromosome CDS1014278 219 - 0.488584
infB SC3227 translation initiation factor IF-2chromosome CDS3409637 2679 - 0.554685
infC SC1353 Translation initiation factor IF-3chromosome CDS1450348 435 + 0.471264
ksgA SC0085 dimethyladenosine transferasechromosome CDS96881 822 - 0.524331
lasT SC4445 putative tRNA/tRNA methyltransferasechromosome CDS4754990 687 + 0.52984
leuS SC0678 leucyl-tRNA synthetasechromosome CDS751672 2676 - 0.553812
ligT SC0188 2'-5' RNA ligasechromosome CDS213857 531 - 0.627119
lysS SC2980 lysyl-tRNA synthetasechromosome CDS3157391 1518 - 0.541502
map SC0215 methionine aminopeptidasechromosome CDS249041 795 - 0.527044
miaA SC4236 tRNA delta(2)-isopentenylpyrophosphate transferasechromosome CDS4538244 951 + 0.545741
miaB SC0698 methylthiolation of isopentenylated A37 derivatives in rRNAchromosome CDS777021 1467 - 0.539196
miaE SC4326 hydroxylase for synthesis of 2-methylthio-cis-ribozeatin in tRNAchromosome CDS4627298 813 + 0.546125
ninZ SC0345 NinZchromosome CDS390208 180 + 0.538889
pcnB SC0184 poly(A) polymerase Ichromosome CDS209980 1419 - 0.561663
pheS SC1356 phenylalanyl-tRNA synthetase alpha subunitchromosome CDS1451784 984 + 0.536585
pnp SC3223 polynucleotide phosphorylase, member of mRNA degradosomechromosome CDS3405274 2166 - 0.558172
prfA SC1770 peptide chain release factor 1chromosome CDS1886311 1083 - 0.577101
prfB SC2981 peptide chain release factor RF-2chromosome CDS3158918 882 - 0.543084
prfC SC4408 peptide chain release factor 3chromosome CDS4716197 1590 + 0.546541
prfH SC0316 peptide chain release factor 2chromosome CDS364165 615 + 0.557724
prmA SC3321 ribosomal protein L11 methyltransferasechromosome CDS3508463 882 + 0.558957
proS SC0241 prolyl-tRNA synthetasechromosome CDS278453 1644 - 0.54562
pth SC1777 peptidyl-tRNA hydrolasechromosome CDS1894073 609 + 0.515599
queA SC0446 S-adenosylmethionine:tRNA ribosyltransferase-isomerasechromosome CDS504052 1065 + 0.560563
rbfA SC3226 ribosome-binding factor Achromosome CDS3409015 402 - 0.537313
relE SC4305 putative inner membrane proteinchromosome CDS4606190 285 + 0.477193
rhlB SC3820 ATP-dependent RNA helicasechromosome CDS4058556 1266 - 0.548183
rhlE SC0817 putative ATP-dependent RNA helicasechromosome CDS914182 1362 + 0.586637
rimJ SC1115 acetylation of N-terminal alanine of 30S ribosomal subunit protein S5chromosome CDS1232559 585 + 0.511111
rimK SC0868 ribosomal protein S6 modification proteinchromosome CDS974308 903 + 0.563677
rimL SC1607 acetyl transferase, modifies N-terminal serine of 50S ribosomal subunit protein L7/L12chromosome CDS1714199 540 - 0.505556
rimM SC2676 16S rRNA-processing proteinchromosome CDS2833310 552 - 0.498188
rluA SC0090 23S rRNA pseudouridylate 746 synthasechromosome CDS103549 660 - 0.574242
rluC SC1134 23S rRNA pseudouridylate synthasechromosome CDS1252104 1044 + 0.546935
rluD SC2665 pseudouridine synthase (pseudouridines 1911, 1915, 1917 in 23S RNA)chromosome CDS2822784 981 - 0.533129
rmf SC1018 ribosome modulation factor (involved in dimerization of 70S ribosomes)chromosome CDS1138255 168 + 0.535714
rnd SC1810 RNase D, processes tRNA precursorchromosome CDS1929195 1128 - 0.553191
rne SC1132 RNase Echromosome CDS1248408 3207 - 0.584035
rnpA SC3758 ribonuclease Pchromosome CDS3984868 417 + 0.556355
rph SC3657 ribonuclease PHchromosome CDS3868979 717 - 0.553696
rplA SC4034 50S ribosomal protein L1chromosome CDS4297554 705 + 0.531915
rplB SC3371 50S ribosomal protein L2chromosome CDS3548246 822 - 0.53163
rplC SC3374 50S ribosomal protein L3chromosome CDS3550000 630 - 0.514286
rplD SC3373 50S ribosomal protein L4chromosome CDS3549384 606 - 0.529703
rplE SC3362 50S ribosomal protein L5chromosome CDS3544603 540 - 0.496296
rplF SC3359 50S ribosomal protein L6chromosome CDS3543311 534 - 0.514981
rplI SC4268 50S ribosomal protein L9chromosome CDS4566196 450 + 0.504444
rplJ SC4035 50S ribosomal protein L10chromosome CDS4298678 498 + 0.522088
rplK SC4033 50S ribosomal protein L11chromosome CDS4297122 429 + 0.526807
rplL SC4036 50S ribosomal protein L7/L12chromosome CDS4299284 324 + 0.475309
rplM SC3283 50S ribosomal protein L13chromosome CDS3467555 444 - 0.506757
rplN SC3364 50S ribosomal protein L14chromosome CDS3545482 372 - 0.5
rplP SC3367 50S ribosomal protein L16chromosome CDS3546462 411 - 0.523114
rplQ SC3349 50S ribosomal protein L17chromosome CDS3537318 384 - 0.544271
rplR SC3358 50S ribosomal protein L18chromosome CDS3542948 354 - 0.528249
rplS SC2674 50S ribosomal protein L19chromosome CDS2832110 348 - 0.488506
rplT SC1355 50S ribosomal protein L20chromosome CDS1451126 357 + 0.498599
rplW SC3372 50S ribosomal protein L23chromosome CDS3549085 303 - 0.488449
rplX SC3363 50S ribosomal protein L24chromosome CDS3545157 315 - 0.460317
rplY SC2241 50S ribosomal protein L25chromosome CDS2350283 285 + 0.512281
rpmA SC3241 50S ribosomal protein L27chromosome CDS3427241 258 - 0.492248
rpmB SC3651 50S ribosomal protein L28chromosome CDS3864526 237 - 0.518987
rpmC SC3366 50S ribosomal protein L29chromosome CDS3546271 192 - 0.53125
rpmD SC3356 50S ribosomal protein L30chromosome CDS3542247 180 - 0.505556
rpmE SC3985 50S ribosomal protein L31chromosome CDS4238724 312 + 0.50641
rpmE2 SC0511 50S ribosomal protein L31chromosome CDS570720 261 + 0.436782
rpmG SC3650 50S ribosomal protein L33chromosome CDS3864338 168 - 0.410714
rpmI SC1354 50S ribosomal protein L35chromosome CDS1450863 213 + 0.474178
rpmJ SC3353 50S ribosomal protein L36chromosome CDS3540322 117 - 0.478632
rpmJ2 SC0512 50S ribosomal protein L36chromosome CDS570986 141 + 0.432624
rpsA SC0935 30S ribosomal protein S1chromosome CDS1049737 1674 + 0.51135
rpsB SC0216 30S ribosomal protein S2chromosome CDS250286 726 + 0.512397
rpsC SC3368 30S ribosomal protein S3chromosome CDS3546885 702 - 0.511396
rpsD SC3351 30S ribosomal protein S4chromosome CDS3538757 621 - 0.513688
rpsE SC3357 30S ribosomal protein S5chromosome CDS3542430 504 - 0.507937
rpsF SC4265 30S ribosomal protein S6chromosome CDS4565206 396 + 0.530303
rpsG SC3381 30S ribosomal protein S7chromosome CDS3556212 471 - 0.503185
rpsH SC3360 30S ribosomal protein S8chromosome CDS3543857 393 - 0.501272
rpsI SC3282 30S ribosomal protein S9chromosome CDS3467147 393 - 0.531807
rpsJ SC3375 30S ribosomal protein S10chromosome CDS3550662 312 - 0.548077
rpsK SC3352 30S ribosomal protein S11chromosome CDS3539411 390 - 0.515385
rpsN SC3361 30S ribosomal protein S14chromosome CDS3544283 306 - 0.522876
rpsO SC3224 30S ribosomal protein S15chromosome CDS3407651 270 - 0.5
rpsP SC2677 30S ribosomal protein S16chromosome CDS2833877 309 - 0.527508
rpsQ SC3365 30S ribosomal protein S17chromosome CDS3546017 255 - 0.47451
rpsR SC4267 30S ribosomal protein S18chromosome CDS4565927 228 + 0.52193
rpsS SC3370 30S ribosomal protein S19chromosome CDS3547951 279 - 0.491039
rpsT SC0037 30S ribosomal protein S20chromosome CDS46534 264 - 0.465909
rsmC SC4405 16S ribosomal RNA m2G1207 methyltransferasechromosome CDS4713447 1029 - 0.5724
rsuA SC2239 16S rRNA pseudouridylate 516 synthasechromosome CDS2347551 696 - 0.54023
rumA SC2897 23S rRNA (uracil-5-)-methyltransferasechromosome CDS3064874 1296 - 0.544753
selB SC3606 selenocysteinyl-tRNA-specific translation factorchromosome CDS3813395 1851 - 0.569422
serS SC0917 seryl-tRNA synthetasechromosome CDS1027744 1293 + 0.540603
smpA SC2685 small membrane protein Achromosome CDS2842252 339 + 0.516224
speG SC1519 spermidine N1-acetyltransferasechromosome CDS1618870 561 - 0.481283
spoU SC3667 putative tRNA/rRNA methyltransferasechromosome CDS3878486 690 + 0.543478
srmB SC2648 ATP-dependent RNA helicasechromosome CDS2800126 1335 + 0.54382
sun SC3344 putative rRNA methylasechromosome CDS3532902 1290 + 0.537209
tgt SC0447 queuine tRNA-ribosyltransferasechromosome CDS505313 1128 + 0.52039
thrS SC1352 threonyl-tRNA synthetasechromosome CDS1448308 1929 + 0.508035
trmA SC4018 tRNA (uracil-5-)-methyltransferasechromosome CDS4281005 1101 - 0.518619
trmD SC2675 tRNA (guanine-N(1)-)-methyltransferasechromosome CDS2832498 768 - 0.535156
trmU SC1185 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferasechromosome CDS1302953 1152 - 0.539931
trpS SC3413 tryptophanyl-tRNA synthetasechromosome CDS3589737 1005 - 0.517413
trpS2 SC4363 tryptophanyl-tRNA synthetasechromosome CDS4669504 1014 - 0.531558
truA SC2370 tRNA pseudouridine synthase Achromosome CDS2494872 813 - 0.558426
truB SC3225 tRNA pseudouridine synthase Bchromosome CDS3408071 945 - 0.556614
tsf SC0217 elongation factor Tschromosome CDS251197 924 + 0.517316
tuf SC4030 elongation factor Tuchromosome CDS4294620 1185 + 0.540084
tuf SC3379 elongation factor Tuchromosome CDS3552745 1230 - 0.538211
tyrS SC1467 tyrosyl-tRNA synthetasechromosome CDS1561172 1275 + 0.531765
valS SC4331 valyl-tRNA synthetasechromosome CDS4630966 2856 - 0.566527
yadB SC0185 glutamyl-tRNA synthetasechromosome CDS211539 942 - 0.579618
yaeJ SC0240 hypothetical proteinchromosome CDS277228 423 + 0.553191
ybjF SC0875 23S rRNA (uracil-5-)-methyltransferasechromosome CDS980860 1131 + 0.560566
ychF SC1778 putative GTP-binding proteinchromosome CDS1894798 1092 + 0.527473
yciH SC1701 hypothetical proteinchromosome CDS1813392 327 - 0.461774
yciL SC1716 putative ribosomal large subunit pseudouridine synthasechromosome CDS1828936 876 - 0.56621
yciO SC1717 putative translation factorchromosome CDS1829912 621 - 0.536232
yebY SC1878 putative periplasmic or exported proteinchromosome CDS1989555 354 - 0.533898
yeiP SC2227 elongation factor Pchromosome CDS2334577 573 + 0.502618
yfcB SC2387 putative methylasechromosome CDS2510072 933 - 0.53269
yfhC SC2563 putative Cytosine/adenosine deaminasechromosome CDS2734454 552 - 0.563406
yfhQ SC2539 putative rRNA methylasechromosome CDS2704192 732 - 0.568306
yfiA SC2668 ribosome associated factor, stabilizes ribosomes against dissociationchromosome CDS2824905 339 + 0.471976
yfiF SC2653 putative tRNA/rRNA methyltransferasechromosome CDS2804636 1038 - 0.568401
ygdI SC0075 putative outer membrane lipoproteinchromosome CDS87688 231 + 0.484848
ygjO SC3167 paral putative methyltransferasechromosome CDS3350421 1137 - 0.534741
yhbH SC3259 putative sigma N modulation factorchromosome CDS3440608 288 + 0.461806
yhbY SC3236 putative RNA-binding protein containing KH domainchromosome CDS3422182 333 + 0.471471
yhdG SC3322 putative TIM-barrel enzyme, possibly dehydrogenasechromosome CDS3510006 966 + 0.536232
yibK SC3619 putative tRNA/rRNA methyltransferasechromosome CDS3832094 474 + 0.563291
yihZ SC3918 D-tyrosyl-tRNA deacylasechromosome CDS4172111 438 + 0.557078
yjbC SC4072 putative pseudouridine synthasechromosome CDS4350171 870 + 0.501149
yjbN SC4122 putative TIM-barrel enzyme, possibly dehydrogenase, nifR3 familychromosome CDS4398578 999 + 0.553554
yjeA SC4223 lysyl-tRNA synthetasechromosome CDS4520795 978 + 0.53681
yjfH SC4245 putative tRNA/rRNA methyltransferasechromosome CDS4548294 732 + 0.57377
yjgF SC4313 putative translation initiation inhibitorchromosome CDS4616986 387 - 0.547804
yjjJ SC4419 Hypothetical protein yjjJchromosome CDS4728366 1311 + 0.57132
yliG SC0847 putative Fe-S oxidoreductase family 1chromosome CDS949942 1326 - 0.53997
ymfC SC1188 putative ribosomal large subunit pseudouridine synthasechromosome CDS1304912 660 - 0.501515
yoaB SC1816 putative translation initiation inhibitorchromosome CDS1935732 345 + 0.501449
yohI SC2191 putative nitrogen regulation proteinchromosome CDS2293238 939 - 0.571885
yqcB SC2904 putative synthasechromosome CDS3075251 783 - 0.58493
yrdC SC3338 putative translation factorchromosome CDS3528531 603 - 0.532338
yrfH SC3429 heat shock protein, predicted small RNA-binding proteinchromosome CDS3606553 402 + 0.559702