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2024-05-18 07:57:29

Gene list

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COG category: Translation, ribosomal structure and biogenesis
Organism: Escherichia coli K12, K-12

Number of genes found: 186

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Escherichia coli K12, K-12
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
alaS b2697 alanyl-tRNA synthetasechromosome CDS2817403 2631 - 0.536298
ansA b1767 cytoplasmic asparaginase Ichromosome CDS1848884 1017 + 0.511308
ansB b2957 periplasmic L-asparaginase IIchromosome CDS3097704 1047 - 0.526266
argS b1876 arginyl-tRNA synthetasechromosome CDS1958086 1734 + 0.532872
asnS b0930 asparaginyl-tRNA synthetasechromosome CDS986808 1401 - 0.523911
aspS b1866 aspartyl-tRNA synthetasechromosome CDS1946774 1773 - 0.537507
cca b3056 fused tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase and phosphatasechromosome CDS3199913 1239 + 0.56255
cysS b0526 cysteinyl-tRNA synthetasechromosome CDS553834 1386 + 0.544733
dbpA b1343 ATP-dependent RNA helicase, specific for 23S rRNAchromosome CDS1407535 1374 + 0.519651
deaD b3162 ATP-dependent RNA helicasechromosome CDS3303993 1890 - 0.555556
def b3287 peptide deformylasechromosome CDS3431712 510 + 0.462745
dtd b3887 D-tyrosyl-tRNA deacylasechromosome CDS4075038 438 + 0.550228
dusB b3260 tRNA-dihydrouridine synthase Bchromosome CDS3408302 966 + 0.522774
dusC b2140 tRNA-dihydrouridine synthase Cchromosome CDS2227460 948 - 0.542194
efp b4147 elongation factor Pchromosome CDS4373722 567 + 0.493827
flxA b1566 Qin prophage; predicted proteinchromosome CDS1644429 333 + 0.429429
fmt b3288 methionyl-tRNA formyltransferasechromosome CDS3432236 948 + 0.528481
frr b0172 ribosome releasing factorchromosome CDS192872 558 + 0.508961
fusA b3340 elongation factor EF-2chromosome CDS3469422 2115 - 0.508274
glnS b0680 glutaminyl-tRNA synthetasechromosome CDS705316 1665 + 0.524925
gltX b2400 glutamyl-tRNA synthetasechromosome CDS2517279 1416 - 0.525424
glyQ b3560 glycyl-tRNA synthetase subunit alphachromosome CDS3722430 912 - 0.561404
glyS b3559 glycyl-tRNA synthetase subunit betachromosome CDS3720351 2070 - 0.554106
gshB b2947 glutathione synthetasechromosome CDS3089900 951 + 0.534175
hisS b2514 histidyl-tRNA synthetasechromosome CDS2637323 1275 - 0.547451
hslR b3400 ribosome-associated heat shock protein Hsp15chromosome CDS3527370 402 + 0.534826
ileS b0026 isoleucyl-tRNA synthetasechromosome CDS22391 2817 + 0.557685
infA b0884 translation initiation factor IF-1chromosome CDS925448 219 - 0.484018
infB b3168 translation initiation factor IF-2chromosome CDS3311364 2673 - 0.534231
infC b1718 translation initiation factor IF-3chromosome CDS1798120 543 - 0.486188
kptA b4331 RNA 2'-phosphotransferase-like proteinchromosome CDS4558953 555 + 0.508108
ksgA b0051 dimethyladenosine transferasechromosome CDS51609 822 - 0.530414
leuS b0642 leucyl-tRNA synthetasechromosome CDS671424 2583 - 0.533488
ligT b0147 2'-5' RNA ligasechromosome CDS161501 531 - 0.559322
lysS b2890 lysine tRNA synthetase, constitutivechromosome CDS3031679 1518 - 0.530962
lysU b4129 lysine tRNA synthetase, induciblechromosome CDS4351223 1518 - 0.474308
map b0168 methionine aminopeptidasechromosome CDS188712 795 - 0.504403
miaA b4171 tRNA delta(2)-isopentenylpyrophosphate transferasechromosome CDS4397275 951 + 0.534175
miaB b0661 isopentenyl-adenosine A37 tRNA methylthiolasechromosome CDS692754 1425 - 0.541754
pcnB b0143 poly(A) polymerase Ichromosome CDS157729 1398 - 0.558655
pheS b1714 phenylalanyl-tRNA synthetase alpha subunitchromosome CDS1795983 984 - 0.538618
pnp b3164 polynucleotide phosphorylase/polyadenylasechromosome CDS3307055 2205 - 0.536961
poxA b4155 lysyl-tRNA synthetasechromosome CDS4380666 978 + 0.526585
prfA b1211 peptide chain release factor 1chromosome CDS1264235 1083 + 0.530009
prfB b2891 peptide chain release factor 2chromosome CDS3033206 1098 - 0.535519
prfC b4375 peptide chain release factor 3chromosome CDS4607437 1590 + 0.540252
prfH b0236 peptide chain release factor 2chromosome CDS253702 501 + 0.542914
prmA b3259 ribosomal protein L11 methyltransferasechromosome CDS3407092 882 + 0.543084
prmB b2330 N5-glutamine methyltransferasechromosome CDS2445530 933 - 0.525188
prmC b1212 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferasechromosome CDS1265317 834 + 0.551559
proS b0194 prolyl-tRNA synthetasechromosome CDS217057 1719 - 0.545084
pth b1204 peptidyl-tRNA hydrolasechromosome CDS1257152 585 - 0.497436
queA b0405 S-adenosylmethionine:tRNA ribosyltransferase-isomerasechromosome CDS424235 1071 + 0.54155
rbfA b3167 ribosome-binding factor Achromosome CDS3310799 402 - 0.529851
relE b1563 Qin prophage; toxin of the RelE-RelB toxin-antitoxin systemchromosome CDS1643370 288 - 0.46875
rhlB b3780 ATP-dependent RNA helicasechromosome CDS3962388 1266 - 0.525276
rhlE b0797 RNA helicasechromosome CDS830095 1365 + 0.567033
rimJ b1066 ribosomal-protein-S5-alanine N-acetyltransferasechromosome CDS1124785 585 + 0.494017
rimK b0852 ribosomal protein S6 modification proteinchromosome CDS891190 903 + 0.562569
rimL b1427 ribosomal-protein-L7/L12-serine acetyltransferasechromosome CDS1496962 540 + 0.433333
rimM b2608 16S rRNA-processing proteinchromosome CDS2743392 549 - 0.489982
rlmB b4180 23S rRNA (Gm2251)-methyltransferasechromosome CDS4407298 732 + 0.562842
rluA b0058 pseudouridine synthase for 23S rRNA (position 746) and tRNAphe(position 32)chromosome CDS59687 660 - 0.539394
rluB b1269 23S rRNA pseudouridylate synthasechromosome CDS1324876 876 + 0.537671
rluC b1086 23S rRNA pseudouridylate synthasechromosome CDS1144163 960 + 0.514583
rluD b2594 23S rRNA pseudouridine synthasechromosome CDS2733053 981 - 0.528033
rmf b0953 ribosome modulation factorchromosome CDS1014938 168 + 0.541667
rna b0611 ribonuclease Ichromosome CDS643420 807 - 0.511772
rnd b1804 ribonuclease Dchromosome CDS1884888 1128 - 0.54078
rne b1084 fused ribonucleaseE: endoribonuclease/RNA-binding protein/RNA degradosome binding proteinchromosome CDS1140405 3186 - 0.556497
rng b3247 ribonuclease Gchromosome CDS3394348 1470 - 0.521088
rnpA b3704 ribonuclease Pchromosome CDS3882516 360 + 0.558333
rph b3643 ribonuclease PHchromosome CDS3813886 687 - 0.561863
rplA b3984 50S ribosomal protein L1chromosome CDS4176902 705 + 0.516312
rplB b3317 50S ribosomal protein L2chromosome CDS3448565 822 - 0.526764
rplC b3320 50S ribosomal protein L3chromosome CDS3450319 630 - 0.514286
rplD b3319 50S ribosomal protein L4chromosome CDS3449703 606 - 0.529703
rplE b3308 50S ribosomal protein L5chromosome CDS3444921 540 - 0.498148
rplF b3305 50S ribosomal protein L6chromosome CDS3443629 534 - 0.520599
rplI b4203 50S ribosomal protein L9chromosome CDS4424131 450 + 0.497778
rplJ b3985 50S ribosomal protein L10chromosome CDS4178019 498 + 0.524096
rplK b3983 50S ribosomal protein L11chromosome CDS4176470 429 + 0.522144
rplL b3986 50S ribosomal protein L7/L12chromosome CDS4178583 366 + 0.461749
rplM b3231 50S ribosomal protein L13chromosome CDS3376245 429 - 0.505827
rplN b3310 50S ribosomal protein L14chromosome CDS3445800 372 - 0.510753
rplO b3301 50S ribosomal protein L15chromosome CDS3442127 435 - 0.535632
rplP b3313 50S ribosomal protein L16chromosome CDS3446781 411 - 0.518248
rplQ b3294 50S ribosomal protein L17chromosome CDS3437638 384 - 0.536458
rplR b3304 50S ribosomal protein L18chromosome CDS3443266 354 - 0.536723
rplS b2606 50S ribosomal protein L19chromosome CDS2742205 348 - 0.482759
rplT b1716 50S ribosomal protein L20chromosome CDS1797417 357 - 0.481793
rplU b3186 50S ribosomal protein L21chromosome CDS3331162 312 - 0.483974
rplV b3315 50S ribosomal protein L22chromosome CDS3447923 333 - 0.498498
rplW b3318 50S ribosomal protein L23chromosome CDS3449404 303 - 0.481848
rplX b3309 50S ribosomal protein L24chromosome CDS3445475 315 - 0.460317
rplY b2185 50S ribosomal protein L25chromosome CDS2280539 285 + 0.505263
rpmA b3185 50S ribosomal protein L27chromosome CDS3330884 258 - 0.5
rpmB b3637 50S ribosomal protein L28chromosome CDS3809461 237 - 0.531646
rpmC b3312 50S ribosomal protein L29chromosome CDS3446590 192 - 0.541667
rpmD b3302 50S ribosomal protein L30chromosome CDS3442565 180 - 0.5
rpmE b3936 50S ribosomal subunit protein L31chromosome CDS4125036 213 + 0.492958
rpmF b1089 50S ribosomal protein L32chromosome CDS1146590 174 + 0.54023
rpmG b3636 50S ribosomal protein L33chromosome CDS3809273 168 - 0.404762
rpmH b3703 50S ribosomal protein L34chromosome CDS3882359 141 + 0.51773
rpmI b1717 50S ribosomal protein L35chromosome CDS1797826 198 - 0.5
rpmJ b3299 50S ribosomal protein L36chromosome CDS3440640 117 - 0.478632
rpsA b0911 30S ribosomal protein S1chromosome CDS961218 1674 + 0.511947
rpsB b0169 30S ribosomal protein S2chromosome CDS189874 726 + 0.513774
rpsC b3314 30S ribosomal protein S3chromosome CDS3447204 702 - 0.509971
rpsD b3296 30S ribosomal protein S4chromosome CDS3439077 621 - 0.507246
rpsE b3303 30S ribosomal protein S5chromosome CDS3442748 504 - 0.501984
rpsF b4200 30S ribosomal protein S6chromosome CDS4423141 396 + 0.525253
rpsG b3341 30S ribosomal protein S7chromosome CDS3471564 540 - 0.501852
rpsH b3306 30S ribosomal protein S8chromosome CDS3444175 393 - 0.501272
rpsI b3230 30S ribosomal protein S9chromosome CDS3375837 393 - 0.524173
rpsJ b3321 30S ribosomal protein S10chromosome CDS3450981 312 - 0.554487
rpsK b3297 30S ribosomal protein S11chromosome CDS3439731 390 - 0.515385
rpsL b3342 30S ribosomal protein S12chromosome CDS3472200 375 - 0.533333
rpsM b3298 30S ribosomal protein S13chromosome CDS3440137 357 - 0.518207
rpsN b3307 30S ribosomal protein S14chromosome CDS3444601 306 - 0.526144
rpsO b3165 30S ribosomal protein S15chromosome CDS3309437 270 - 0.518519
rpsP b2609 30S ribosomal protein S16chromosome CDS2743959 249 - 0.514056
rpsQ b3311 30S ribosomal protein S17chromosome CDS3446336 255 - 0.47451
rpsR b4202 30S ribosomal protein S18chromosome CDS4423862 228 + 0.526316
rpsS b3316 30S ribosomal protein S19chromosome CDS3448270 279 - 0.487455
rpsT b0023 30S ribosomal protein S20chromosome CDS20815 264 - 0.465909
rpsU b3065 30S ribosomal protein S21chromosome CDS3208803 216 + 0.518519
rrmJ b3179 23S rRNA methyltransferasechromosome CDS3325057 630 - 0.504762
rsmB b3289 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependentchromosome CDS3433229 1290 + 0.496899
rsmC b4371 16S ribosomal RNA m2G1207 methyltransferasechromosome CDS4604692 1032 - 0.557171
rsuA b2183 16S rRNA pseudouridylate 516 synthasechromosome CDS2277810 696 - 0.528736
rumA b2785 23S rRNA (uracil-5-)-methyltransferasechromosome CDS2911721 1302 - 0.514593
rumB b0859 23S rRNA m(5)U747-methyltransferasechromosome CDS897741 1128 + 0.546099
selB b3590 selenocysteinyl-tRNA-specific translation factorchromosome CDS3756040 1845 - 0.563686
serS b0893 seryl-tRNA synthetasechromosome CDS938651 1293 + 0.526682
smpA b2617 small membrane lipoproteinchromosome CDS2751627 342 + 0.494152
speG b1584 spermidine N1-acetyltransferasechromosome CDS1654208 561 + 0.468806
srmB b2576 ATP-dependent RNA helicasechromosome CDS2710918 1335 + 0.547566
tadA b2559 tRNA-specific adenosine deaminasechromosome CDS2695376 537 - 0.541899
tdcF b3113 predicted L-PSP (mRNA) endoribonucleasechromosome CDS3257743 390 - 0.525641
tgt b0406 queuine tRNA-ribosyltransferasechromosome CDS425361 1128 + 0.513298
thrS b1719 threonyl-tRNA synthetasechromosome CDS1798666 1929 - 0.495594
trmA b3965 tRNA (uracil-5-)-methyltransferasechromosome CDS4160193 1101 - 0.508629
trmD b2607 tRNA (guanine-N(1)-)-methyltransferasechromosome CDS2742594 768 - 0.533854
trmH b3651 tRNA (Guanosine-2'-O-)-methyltransferasechromosome CDS3822538 690 + 0.553623
trmU b1133 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferasechromosome CDS1191890 1107 - 0.537489
trpS b3384 tryptophanyl-tRNA synthetasechromosome CDS3510656 1005 - 0.520398
truA b2318 tRNA pseudouridine synthase Achromosome CDS2432846 813 - 0.553506
truB b3166 tRNA pseudouridine synthase Bchromosome CDS3309855 945 - 0.524868
tsf b0170 elongation factor Tschromosome CDS190857 852 + 0.498826
tufA b3339 protein chain elongation factor EF-Tu (duplicate of tufB)chromosome CDS3468167 1185 - 0.532489
tufB b3980 protein chain elongation factor EF-Tu (duplicate of tufA)chromosome CDS4173967 1185 + 0.534177
tyrS b1637 tyrosyl-tRNA synthetasechromosome CDS1713972 1275 - 0.515294
valS b4258 valyl-tRNA synthetasechromosome CDS4479005 2856 - 0.545868
yadB b0144 glutamyl-Q tRNA(Asp) synthetasechromosome CDS159186 927 - 0.536138
yaeJ b0191 hypothetical proteinchromosome CDS214833 423 + 0.541371
yaiX_1 b0362 chromosome pseudo381728 387 - 0.45478
ybfP b0689 hypothetical proteinchromosome CDS714635 495 + 0.454545
ycdK b1010 hypothetical proteinchromosome CDS1070996 387 - 0.540052
ychF b1203 translation-associated GTPasechromosome CDS1255944 1092 - 0.510073
yciH b1282 translation intiation factor Sui1chromosome CDS1340682 327 + 0.498471
yciO b1267 hypothetical proteinchromosome CDS1322122 621 + 0.481481
yebU b1835 predicted methyltransferasechromosome CDS1918247 1440 + 0.518056
yeiP b2171 elongation factor Pchromosome CDS2263472 573 + 0.499127
yfbG b2255 hypothetical proteinchromosome CDS2366061 1983 + 0.511346
yfhQ b2532 predicted methyltransferasechromosome CDS2660605 741 - 0.554656
yfiA b2597 cold shock protein associated with 30S ribosomal subunitchromosome CDS2735176 342 + 0.461988
yfiF b2581 predicted methyltransferasechromosome CDS2715513 1038 - 0.56262
ygjO b3084 predicted methyltransferase small domainchromosome CDS3232761 1137 - 0.538259
yhbH b3203 predicted ribosome-associated, sigma 54 modulation proteinchromosome CDS3344195 288 + 0.447917
yhbY b3180 predicted RNA-binding proteinchromosome CDS3325812 294 + 0.486395
yibK b3606 predicted rRNA methylasechromosome CDS3779238 474 + 0.550633
yjbC b4022 23S rRNA pseudouridine synthasechromosome CDS4228377 873 + 0.515464
yjbN b4049 tRNA-dihydrouridine synthase Achromosome CDS4259692 1038 + 0.536609
yjeJ b4145 hypothetical proteinchromosome CDS4371388 870 - 0.451724
yjgF b4243 ketoacid-binding proteinchromosome CDS4468550 387 - 0.529716
yjgH b4248 predicted mRNA endoribonucleasechromosome CDS4470837 396 - 0.472222
yjtD b4403 predicted rRNA methyltransferasechromosome CDS4638965 687 + 0.497817
ykgM b0296 50S ribosomal protein L31chromosome CDS311738 264 - 0.458333
ykgO b4506 rpmJ (L36) paralogchromosome CDS311598 141 - 0.41844
yliG b0835 predicted SAM-dependent methyltransferasechromosome CDS875933 1326 - 0.526395
ymfC b1135 23S rRNA pseudouridine synthasechromosome CDS1193521 654 - 0.512232
ymjA b1295 hypothetical proteinchromosome CDS1355447 246 - 0.48374
yoaB b1809 hypothetical proteinchromosome CDS1891391 345 + 0.515942
yqcB b2791 tRNA pseudouridine synthasechromosome CDS2921024 783 - 0.54023
yrdC b3282 predicted ribosome maturation factorchromosome CDS3428865 573 - 0.521815