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2024-05-18 12:38:02

Gene list

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Genomic element: pSB4_227

Number of genes found: 221

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Shigella boydii Sb227, Sb227
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA pSB4_227 repeat_region29529 136 + 0.558824
NA SBO_P063 IS600 ORF2pSB4_227 CDS47385 189 + 0.529101
NA pSB4_227 repeat_region100970 768 - 0.518229
NA SBO_P055 IS629 ORF1pSB4_227 CDS40986 327 - 0.544343
NA SBO_P132 hypothetical proteinpSB4_227 CDS110927 591 + 0.499154
NA SBO_P109 IS911 ORF2pSB4_227 CDS90287 627 + 0.53748
NA pSB4_227 repeat_region56590 1428 - 0.535014
NA SBO_P015 hypothetical proteinpSB4_227 CDS9387 318 + 0.490566
NA pSB4_227 repeat_region20673 159 + 0.45283
NA SBO_P140 hypothetical proteinpSB4_227 CDS120130 303 + 0.448845
NA pSB4_227 repeat_region18062 308 - 0.577922
NA SBO_P037 IS100 ORF1pSB4_227 CDS26921 189 + 0.57672
NA SBO_P073 IS1294 transposasepSB4_227 CDS56300 267 - 0.576779
NA pSB4_227 repeat_region28386 792 + 0.494949
NA SBO_P091 putative bacteriophage proteinpSB4_227 CDS75172 288 - 0.454861
NA pSB4_227 repeat_region76089 1374 - 0.576419
NA SBO_P011 IS2 ORF1pSB4_227 CDS6997 366 - 0.527322
NA SBO_P120 IS630 ORFpSB4_227 CDS100298 609 - 0.515599
NA pSB4_227 repeat_region56128 463 - 0.533477
NA pSB4_227 repeat_region25672 417 + 0.508393
NA SBO_P058 hypothetical proteinpSB4_227 CDS42859 168 + 0.47619
NA pSB4_227 repeat_region14920 600 - 0.503333
NA SBO_P079 IS1294 transposasepSB4_227 CDS64200 174 + 0.574713
NA pSB4_227 repeat_region45532 138 - 0.485507
NA SBO_P139 IS1294 transposasepSB4_227 CDS118397 1209 - 0.574855
NA SBO_P092 putative bacteriophage proteinpSB4_227 CDS75459 312 - 0.445513
NA pSB4_227 repeat_region46875 108 - 0.453704
NA pSB4_227 repeat_region100275 695 - 0.519424
NA SBO_P090 IS91 ORFpSB4_227 CDS73562 1074 + 0.553073
NA SBO_P025 ISSfl4 ORF2pSB4_227 CDS18017 348 + 0.566092
NA pSB4_227 repeat_region53113 113 - 0.39823
NA pSB4_227 repeat_region84018 1306 + 0.538285
NA SBO_P107 IS629 ORF2pSB4_227 CDS88998 888 - 0.538288
NA SBO_P102 IS629 ORF1pSB4_227 CDS84072 327 + 0.541284
NA SBO_P012 putative IS orf, fragmentpSB4_227 CDS7855 402 - 0.557214
NA pSB4_227 repeat_region123889 185 + 0.491892
NA pSB4_227 repeat_region126363 154 - 0.487013
NA pSB4_227 repeat_region39329 315 - 0.495238
NA pSB4_227 repeat_region46100 768 - 0.520833
NA SBO_P039 IS629 ORF2pSB4_227 CDS27733 612 + 0.54085
NA pSB4_227 repeat_region6123 1331 - 0.532682
NA pSB4_227 repeat_region27081 1306 + 0.539816
NA SBO_P105 IS600 ORF1pSB4_227 CDS87442 303 + 0.468647
NA SBO_P002 IS2 ORF2pSB4_227 CDS191 303 - 0.49835
NA SBO_P032 hypothetical proteinpSB4_227 CDS22354 207 - 0.497585
NA SBO_P080 hypothetical proteinpSB4_227 CDS65860 222 + 0.423423
NA SBO_P042 putative protein encoded within ISpSB4_227 CDS29493 207 + 0.502415
NA SBO_P003 IS2 ORF2pSB4_227 CDS804 792 - 0.541667
NA pSB4_227 repeat_region94848 768 - 0.522135
NA pSB4_227 repeat_region121497 382 - 0.518325
NA SBO_P143 IS600 ORF2pSB4_227 CDS121311 189 + 0.529101
NA SBO_P029 putative IS orf, fragmentpSB4_227 CDS19041 576 + 0.5625
NA SBO_P070 ISSfl1 ORF2pSB4_227 CDS55279 390 - 0.515385
NA pSB4_227 repeat_region14304 225 - 0.4
NA SBO_P028 putative protein encoded within ISpSB4_227 CDS18645 384 + 0.559896
NA pSB4_227 repeat_region71998 463 + 0.533477
NA SBO_P144 IS629 ORF2pSB4_227 CDS121539 366 - 0.519126
NA pSB4_227 repeat_region90265 657 + 0.541857
NA SBO_P024 putative IS orf, fragmentpSB4_227 CDS17712 306 + 0.535948
NA SBO_P071 ISSfl1 ORF1pSB4_227 CDS55674 225 - 0.515556
NA SBO_P053 IS150 ORF1pSB4_227 CDS39887 210 + 0.495238
NA SBO_P050 IS911 ORF2pSB4_227 CDS35935 921 + 0.519001
NA SBO_P089 hypothetical proteinpSB4_227 CDS72669 396 - 0.419192
NA pSB4_227 repeat_region118376 1203 - 0.578554
NA pSB4_227 repeat_region4554 130 + 0.476923
NA SBO_P147 hypothetical proteinpSB4_227 CDS123143 693 - 0.339105
NA SBO_P117 hypothetical proteinpSB4_227 CDS97092 1089 + 0.429752
NA SBO_P034 IS3 ORF2pSB4_227 CDS24082 528 + 0.530303
NA SBO_P078 hypothetical proteinpSB4_227 CDS63495 300 - 0.533333
NA pSB4_227 repeat_region64184 361 + 0.515235
NA SBO_P026 putative IS orf, fragmentpSB4_227 CDS18384 183 + 0.579235
NA SBO_P085 IS1294 transposasepSB4_227 CDS70356 219 + 0.593607
NA SBO_P099 IS2 ORF1pSB4_227 CDS82399 366 - 0.530055
NA SBO_P114 hypothetical proteinpSB4_227 CDS94361 270 + 0.503704
NA pSB4_227 repeat_region88797 159 + 0.54717
NA SBO_P065 IS629 ORF1pSB4_227 CDS48496 327 - 0.541284
NA pSB4_227 repeat_region24053 587 + 0.534923
NA SBO_P110 hypothetical proteinpSB4_227 CDS91079 348 + 0.545977
NA SBO_P130 hypothetical proteinpSB4_227 CDS110172 462 + 0.478355
NA SBO_P041 iso-IS1 ORF2pSB4_227 CDS29171 345 + 0.521739
NA SBO_P040 IS100 ORF2pSB4_227 CDS28328 783 + 0.500639
NA SBO_P019 hypothetical proteinpSB4_227 CDS13685 579 - 0.310881
NA SBO_P116 hypothetical proteinpSB4_227 CDS96247 843 + 0.39739
NA pSB4_227 repeat_region53239 593 - 0.521079
NA SBO_P126 oriT nicking and unwinding protein, fragmentpSB4_227 CDS103306 4899 + 0.600122
NA SBO_P075 IS1294 transposasepSB4_227 CDS58014 933 - 0.577706
NA SBO_P023 IS4 ORFpSB4_227 CDS16228 1173 - 0.543905
NA pSB4_227 repeat_region33796 697 - 0.494978
NA pSB4_227 repeat_region70357 215 + 0.604651
NA pSB4_227 repeat_region8418 743 - 0.497981
NA SBO_P069 IS630 ORFpSB4_227 CDS54133 1032 - 0.531008
NA pSB4_227 repeat_region22190 129 + 0.434109
NA SBO_P056 IS911 ORF1pSB4_227 CDS41459 339 + 0.442478
NA SBO_P018 hypothetical proteinpSB4_227 CDS12771 585 - 0.521368
NA SBO_P014 IS600 ORF1pSB4_227 CDS8794 303 - 0.468647
NA SBO_P013 IS600 ORF2pSB4_227 CDS8336 423 - 0.536643
NA SBO_P088 putative IS91 ORF2pSB4_227 CDS73026 423 + 0.501182
NA SBO_P057 IS911 ORF2pSB4_227 CDS41824 840 + 0.546429
NA SBO_P021 putative IS91 ORF2pSB4_227 CDS15585 186 - 0.537634
NA pSB4_227 repeat_region95951 103 - 0.436893
NA pSB4_227 repeat_region82859 215 - 0.47907
NA SBO_P074 IS4 ORFpSB4_227 CDS56604 1347 - 0.537491
NA SBO_P020 IS91 ORFpSB4_227 CDS15229 357 - 0.52381
NA pSB4_227 repeat_region42672 161 - 0.496894
NA SBO_P072 ISSfl1 ORF1pSB4_227 CDS55911 213 - 0.539906
NA pSB4_227 repeat_region18819 237 - 0.548523
NA pSB4_227 repeat_region19540 198 + 0.469697
NA SBO_P010 IS2 ORF2pSB4_227 CDS6134 792 - 0.546717
NA SBO_P093 ISSfl2 ORFpSB4_227 CDS76235 1197 + 0.576441
NA SBO_P060 putative IS orf, fragmentpSB4_227 CDS45488 285 - 0.452632
NA pSB4_227 repeat_region7951 132 + 0.545455
NA SBO_P064 IS629 ORF2pSB4_227 CDS47613 612 - 0.542484
NA pSB4_227 repeat_region55266 864 + 0.519676
NA SBO_P125 oriT nicking and unwinding protein, fragmentpSB4_227 CDS102927 420 + 0.57381
NA pSB4_227 repeat_region40057 1310 - 0.539695
NA pSB4_227 repeat_region15516 333 - 0.516517
NA SBO_P068 iso-IS1 ORF2pSB4_227 CDS53359 183 - 0.546448
NA pSB4_227 repeat_region46983 588 + 0.486395
NA SBO_P048 hypothetical proteinpSB4_227 CDS35093 285 + 0.424561
NA SBO_P004 IS2 ORF1pSB4_227 CDS1667 366 - 0.532787
NA SBO_P049 hypothetical proteinpSB4_227 CDS35365 486 + 0.442387
NA SBO_P097 hypothetical proteinpSB4_227 CDS80939 243 + 0.452675
NA SBO_P036 IS100 ORF1pSB4_227 CDS26173 771 + 0.523995
NA SBO_P142 IS600 ORF1pSB4_227 CDS120973 303 + 0.468647
NA pSB4_227 repeat_region793 1331 - 0.53118
NA SBO_P062 IS600 ORF1pSB4_227 CDS47047 303 + 0.462046
NA pSB4_227 repeat_region116166 301 - 0.538206
NA pSB4_227 repeat_region47571 1306 - 0.539816
NA pSB4_227 repeat_region88956 1310 - 0.538931
NA SBO_P007 hypothetical proteinpSB4_227 CDS4699 165 + 0.381818
NA pSB4_227 repeat_region120909 588 + 0.488095
NA SBO_P022 putative transposasepSB4_227 CDS15933 285 + 0.536842
NA SBO_P103 IS629 ORF2pSB4_227 CDS84670 612 + 0.539216
NA pSB4_227 repeat_region26087 994 + 0.531187
NA SBO_P030 putative transposase, fragmentpSB4_227 CDS20385 207 + 0.444444
NA pSB4_227 repeat_region87378 1264 + 0.496835
NA SBO_P086 IS4 ORFpSB4_227 CDS70638 1347 + 0.538233
NA SBO_P051 putative transposasepSB4_227 CDS36913 1128 - 0.494681
NA pSB4_227 repeat_region16215 1426 - 0.536466
NA pSB4_227 repeat_region79041 177 - 0.485876
NA pSB4_227 repeat_region77609 768 + 0.519531
NA pSB4_227 repeat_region29177 348 + 0.522988
NA SBO_P054 IS629 ORF2pSB4_227 CDS40099 888 - 0.538288
NA pSB4_227 repeat_region72995 1827 + 0.530378
NA SBO_P148 IS3 ORF2pSB4_227 CDS123891 153 + 0.496732
NA pSB4_227 repeat_region58017 903 - 0.582503
NA pSB4_227 repeat_region41423 1249 + 0.515612
NA pSB4_227 repeat_region54109 1160 - 0.523276
NA SBO_P135 hypothetical proteinpSB4_227 CDS114273 225 + 0.475556
NA SBO_P046 putative reverse transcriptasepSB4_227 CDS33045 1047 - 0.493792
NA SBO_P141 hypothetical proteinpSB4_227 CDS120423 483 + 0.457557
NA SBO_P096 putative transposasepSB4_227 CDS79748 1128 - 0.494681
NA pSB4_227 repeat_region4971 768 - 0.520833
NA pSB4_227 repeat_region39643 416 + 0.463942
NA SBO_P100 putative IS orf, fragmentpSB4_227 CDS82963 219 - 0.420091
NA SBO_P106 IS600 ORF2pSB4_227 CDS87885 714 + 0.515406
NA pSB4_227 repeat_region70571 1428 + 0.535714
NA SBO_P038 IS629 ORF1pSB4_227 CDS27135 327 + 0.541284
NA pSB4_227 repeat_region19209 148 + 0.594595
NA SBO_P001 putative resolvase, fragmentpSB4_227 CDS485 243 + 0.514403
NA SBO_P101 hypothetical proteinpSB4_227 CDS83236 639 - 0.370892
NA pSB4_227 repeat_region24848 768 - 0.520833
NA SBO_P146 IS911 ORF2pSB4_227 CDS122280 840 + 0.546429
NA SBO_P098 IS2 ORF2pSB4_227 CDS81536 792 - 0.544192
NA pSB4_227 repeat_region121879 1249 + 0.515612
NA pSB4_227 repeat_region114481 1689 - 0.562463
NA SBO_P108 IS629 ORF1pSB4_227 CDS89885 327 - 0.544343
NA pSB4_227 repeat_region36304 560 + 0.5375
NA SBO_P047 IS911 ORF1pSB4_227 CDS34118 303 - 0.435644
NA pSB4_227 repeat_region219 346 - 0.531792
NA SBO_P095 IS2 ORF2pSB4_227 CDS79027 288 - 0.503472
NA SBO_P137 IS629 ORF1pSB4_227 CDS116065 348 - 0.537356
NA SBO_P136 IS1294 transposasepSB4_227 CDS114653 1200 - 0.575
NA SBO_P045 putative transposase, fragmentpSB4_227 CDS32272 486 + 0.44856
NA SBO_P027 hypothetical proteinpSB4_227 CDS18535 516 + 0.552326
NA SBO_P145 IS911 ORF1pSB4_227 CDS121915 339 + 0.442478
NA pSB4_227 repeat_region14657 264 - 0.454545
NA pSB4_227 repeat_region81525 1331 - 0.531931
NA SBO_P087 IS1294 transposasepSB4_227 CDS72022 267 + 0.573034
ccdA SBO_P111 post-segregation antitoxinpSB4_227 CDS91598 219 + 0.497717
ccdB SBO_P112 post-segregation toxinpSB4_227 CDS91797 327 + 0.504587
cjrA SBO_P084 putative iron-regulated proteinpSB4_227 CDS69204 852 - 0.481221
cjrB SBO_P083 TonB-like colicin Js sensitive putative membrane proteinpSB4_227 CDS68420 777 - 0.465894
cjrC SBO_P082 colicin Js sensitive receptor proteinpSB4_227 CDS65990 2262 - 0.484085
finO SBO_P128 FinOpSB4_227 CDS109025 561 + 0.565062
hmo SBO_P131 putative regulatorpSB4_227 CDS110679 210 + 0.371429
icsP/sopA SBO_P149 IcsP (SopA)pSB4_227 CDS125379 948 + 0.377637
insB SBO_P061 IS1 ORF2pSB4_227 CDS46115 504 - 0.531746
insB SBO_P121 IS1 ORF2pSB4_227 CDS100985 504 - 0.527778
insB SBO_P094 IS1 ORF2pSB4_227 CDS77858 504 + 0.531746
insB SBO_P008 IS1 ORF2pSB4_227 CDS4986 504 - 0.531746
insB SBO_P035 IS1 ORF2pSB4_227 CDS24863 504 - 0.531746
insB SBO_P115 IS1 ORF2pSB4_227 CDS94863 504 - 0.53373
ipaH1.4 SBO_P059 invasion plasmid antigenpSB4_227 CDS43044 1728 - 0.458912
ipaH4.5 SBO_P066 invasion plasmid antigenpSB4_227 CDS48874 1725 - 0.471884
ipaH7.8 SBO_P067 invasion plasmid antigenpSB4_227 CDS51026 1698 - 0.458775
ipaH9.8 SBO_P113 invasion plasmid antigenpSB4_227 CDS92516 1638 + 0.483516
ipgB2 SBO_P033 IpgB2pSB4_227 CDS22962 567 + 0.320988
mkaD SBO_P017 mouse killing factorpSB4_227 CDS11927 720 - 0.380556
msbB2 SBO_P119 MsbB2pSB4_227 CDS99200 945 + 0.427513
mvpT SBO_P124 plasmid maintenance proteinpSB4_227 CDS102618 228 - 0.535088
ospB SBO_P005 OspBpSB4_227 CDS2511 867 + 0.329873
ospC1 SBO_P077 OspC1pSB4_227 CDS61627 1413 - 0.317764
ospC2 SBO_P138 OspC2pSB4_227 CDS116804 1455 + 0.325086
ospC3 SBO_P104 OspC3pSB4_227 CDS85650 1455 + 0.31134
ospC3 SBO_P009 pSB4_227 pseudo4807 1343 - 0.441549
ospD1 SBO_P031 OspD1pSB4_227 CDS21177 678 + 0.359882
ospD2 SBO_P016 OspD2pSB4_227 CDS9786 1710 - 0.331579
ospD3 SBO_P076 OspD3pSB4_227 CDS59602 1698 - 0.358068
parA SBO_P043 plasmid segregation proteinpSB4_227 CDS29837 1200 + 0.4425
parB SBO_P044 plasmid segregation proteinpSB4_227 CDS31036 981 + 0.423038
phoN2/apy SBO_P006 PhoN2 (Apy)pSB4_227 CDS3707 741 + 0.425101
repA SBO_P134 RepApSB4_227 CDS112308 858 + 0.578089
repB SBO_P133 RepBpSB4_227 CDS111757 261 + 0.417625
tieB SBO_P081 TieBpSB4_227 CDS64746 1140 - 0.462281
traD SBO_P122 membrane protein, fragmentpSB4_227 CDS101798 414 + 0.555556
traX SBO_P127 F pilin acetylation proteinpSB4_227 CDS108224 747 + 0.576975
trbH SBO_P123 hypothetical proteinpSB4_227 CDS102211 720 + 0.502778
virF SBO_P052 VirFpSB4_227 CDS38539 789 + 0.302915
virK SBO_P118 VirKpSB4_227 CDS98185 951 + 0.415352
yigA SBO_P129 hypothetical proteinpSB4_227 CDS109716 213 + 0.619718