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2024-05-18 08:50:18

Gene list

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Genomic element: pCD1

Number of genes found: 158

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Yersinia pestis biovar Microtus str. 91001, 91001
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA YP_pCD80 hypothetical proteinpCD1 CDS56176 297 - 0.373737
NA YP_pCD77 pCD1 pseudo55453 204 + 0.47549
NA YP_pCD05 endonuclease-like proteinpCD1 CDS2654 369 + 0.487805
NA YP_pCD11 pCD1 pseudo6149 303 + 0.508251
NA pCD1 repeat_region46022 333 - 0.435435
NA YP_pCD57 hypothetical proteinpCD1 CDS42199 324 - 0.388889
NA YP_pCD86 pCD1 pseudo59701 432 + 0.569444
NA YP_pCD09 hypothetical proteinpCD1 CDS5416 219 - 0.488584
NA YP_pCD78 hypothetical proteinpCD1 CDS55767 276 + 0.431159
NA pCD1 repeat_region58432 1667 + 0.55129
NA YP_pCD96 pCD1 pseudo68841 294 - 0.503401
NA YP_pCD97 hypothetical proteinpCD1 CDS69146 492 + 0.554878
NA YP_pCD10 hypothetical proteinpCD1 CDS5934 243 + 0.539095
NA YP_pCD61 pCD1 pseudo44440 216 - 0.412037
NA YP_pCD72 hypothetical proteinpCD1 CDS50846 459 + 0.553377
NA YP_pCD71 hypothetical proteinpCD1 CDS50499 324 + 0.481481
NA YP_pCD62 hypothetical proteinpCD1 CDS44639 120 - 0.475
NA YP_pCD84 hypothetical proteinpCD1 CDS58463 216 - 0.49537
NA YP_pCD03 hypothetical proteinpCD1 CDS1959 399 + 0.538847
NA YP_pCD76 hypothetical proteinpCD1 CDS54686 249 + 0.502008
NA pCD1 repeat_region41929 707 - 0.417256
NA YP_pCD89 pCD1 misc_feature61888 141 - 0.51773
NA YP_pCD02 transposase/IS proteinpCD1 CDS1106 783 + 0.50447
NA YP_pCD89 putative transposasepCD1 CDS61882 267 - 0.479401
NA YP_pCD88 putative transposasepCD1 CDS61049 810 - 0.504938
NA YP_pCD98 hypothetical proteinpCD1 CDS69803 324 + 0.487654
NA YP_pCD58 pCD1 pseudo42556 156 - 0.467949
NA YP_pCD90 hypothetical proteinpCD1 CDS62248 330 - 0.281818
NA YP_pCD16 hypothetical proteinpCD1 CDS11858 207 + 0.608696
NA YP_pCD91 hypothetical proteinpCD1 CDS62716 465 - 0.301075
NA YP_pCD04 possible transposasepCD1 CDS2229 405 - 0.516049
NA pCD1 repeat_region1 1954 + 0.51433
NA YP_pCD85 probable transposasepCD1 CDS58682 1020 + 0.552941
NA YP_pCD83 IS1222-like transposasepCD1 CDS57782 498 - 0.53012
NA YP_pCD80 pCD1 misc_feature56401 54 - 0.37037
NA pCD06.1 pCD1 misc_RNA3549 75 + 0.48
NA YP_pCD69 pCD1 pseudo49309 246 + 0.49187
NA YP_pCD15 putative transposase proteinpCD1 CDS11250 537 - 0.49162
NA pCD1 rep_origin4760 151 + 0.357616
NA YP_pCD12 hypothetial proteinpCD1 CDS6747 450 + 0.451111
NA YP_pCD73 pCD1 pseudo51413 198 + 0.5
NA YP_pCD79 pCD1 misc_feature56041 255 + 0.384314
NA pCD1 repeat_region44887 266 + 0.447368
NA YP_pCD64 hypothetical proteinpCD1 CDS45633 420 - 0.388095
NA YP_pCD94 pCD1 pseudo66226 381 - 0.509186
NA YP_pCD79 putative plasmid stabilization element ParEpCD1 CDS56035 300 + 0.38
NA YP_pCD59 hypothetical proteinpCD1 CDS42691 210 + 0.428571
NA YP_pCD56 pCD1 pseudo42033 132 - 0.462121
NA YP_pCD63 pCD1 pseudo44914 192 + 0.458333
NA pCD1 repeat_region57753 675 - 0.546667
NA YP_pCD80 pCD1 misc_feature56290 69 - 0.362319
NA pCD1 misc_feature3711 879 + 0.5438
NA pCD1 repeat_region13939 305 + 0.47541
NA YP_pCD65 hypothetical proteinpCD1 CDS46324 390 + 0.276923
ORFA YP_pCD20 putative transposase ORFApCD1 CDS15028 267 - 0.434457
ORFA YP_pCD20 pCD1 misc_feature15034 141 - 0.404255
ORFB YP_pCD19 putative transposasepCD1 CDS14570 435 - 0.455172
ORFC YP_pCD18 putative transposasepCD1 CDS14265 309 - 0.459547
lcrG YP_pCD51 probable Yop regulator LcrGpCD1 CDS37671 288 + 0.46875
lcrR YP_pCD50 hypothetical protein LcrRpCD1 CDS37189 441 + 0.489796
lcrV YP_pCD52 V antigen LcrVpCD1 CDS37960 975 + 0.377436
repA YP_pCD08 pCD1 misc_feature4236 315 + 0.55873
repA YP_pCD08 replication protein RepA-like proteinpCD1 CDS3723 867 + 0.542099
repB YP_pCD06 replication protein RepB-like proteinpCD1 CDS3160 255 + 0.423529
sopA YP_pCD74 putative plasmid partitioning transcription repressorpCD1 CDS52458 1119 + 0.440572
sopB YP_pCD75 putative plasmid partitioning control proteinpCD1 CDS53561 978 + 0.4182
sycD YP_pCD53 putative yopB/yopD chaperone SycDpCD1 CDS38937 507 + 0.441815
sycE YP_pCD82 putative yopE chaperone SycEpCD1 CDS57327 393 + 0.409669
sycH YP_pCD87 putative yopH targeting protein SycHpCD1 CDS60476 426 + 0.41784
sycN YP_pCD46 putative type III secretion protein SycNpCD1 CDS34014 372 + 0.526882
sycT YP_pCD66 putative yopT chaperone SycTpCD1 CDS46757 399 - 0.411028
tap YP_pCD07 putative repA translation proteinpCD1 CDS3656 75 + 0.44
tnp YP_pCD01 putative transposasepCD1 CDS87 1023 + 0.527859
tnpA YP_pCD93 putative transposasepCD1 CDS63914 2316 + 0.519862
tnpR YP_pCD92 putative resolvasepCD1 CDS63199 636 - 0.446541
tnpR YP_pCD92 pCD1 misc_feature63748 69 - 0.275362
tyeA YP_pCD45 Yop secretion and targeting control protein TyeApCD1 CDS33749 279 + 0.433692
virF YP_pCD34 putative thermoregulatory protein VirFpCD1 CDS23948 816 - 0.416667
virG YP_pCD35 putative Yop targeting lipoprotein VirGpCD1 CDS24887 396 - 0.444444
yadA YP_pCD95 pCD1 pseudo67203 1313 + 0.431836
ylpA YP_pCD70 pCD1 pseudo50075 78 + 0.589744
ylpA YP_pCD70 pCD1 pseudo49687 712 + 0.485955
ylpA YP_pCD70 pCD1 pseudo49997 69 + 0.594203
yopB YP_pCD54 putative Yop targeting protein YopBpCD1 CDS39421 1206 + 0.466833
yopB YP_pCD54 pCD1 misc_feature39916 69 + 0.565217
yopB YP_pCD54 pCD1 misc_feature40102 69 + 0.463768
yopD YP_pCD55 putative Yop negative regulation/targeting component YopDpCD1 CDS40645 921 + 0.431053
yopE YP_pCD81 putative outer membrane virulence protein YopEpCD1 CDS56474 660 - 0.510606
yopH YP_pCD17 putative protein-tyrosine phosphatase Yop effector YopHpCD1 CDS12347 1407 + 0.474058
yopJ YP_pCD14 putative targeted effector protein YopJpCD1 CDS9798 867 + 0.346021
yopM YP_pCD60 pCD1 misc_feature43744 60 + 0.3
yopM YP_pCD60 pCD1 misc_feature44236 60 + 0.466667
yopM YP_pCD60 pCD1 misc_feature43684 60 + 0.366667
yopM YP_pCD60 pCD1 misc_feature44176 60 + 0.416667
yopM YP_pCD60 pCD1 misc_feature43870 60 + 0.35
yopM YP_pCD60 putative targeted effector protein YopMpCD1 CDS43294 1104 + 0.39221
yopM YP_pCD60 pCD1 misc_feature43624 60 + 0.366667
yopM YP_pCD60 pCD1 misc_feature43810 60 + 0.433333
yopM YP_pCD60 pCD1 misc_feature43936 60 + 0.4
yopM YP_pCD60 pCD1 misc_feature44116 60 + 0.4
yopM YP_pCD60 pCD1 misc_feature44056 60 + 0.366667
yopM YP_pCD60 pCD1 misc_feature43570 54 + 0.388889
yopM YP_pCD60 pCD1 misc_feature44296 60 + 0.416667
yopM YP_pCD60 pCD1 misc_feature43582 675 + 0.379259
yopM YP_pCD60 pCD1 misc_feature43996 60 + 0.316667
yopN YP_pCD44 putative membrane-bound Yop targeting protein YopNpCD1 CDS32887 882 + 0.460317
yopQ YP_pCD68 putative virulence determinant protein YopQpCD1 CDS48608 564 + 0.336879
yopT YP_pCD67 putative cytotoxic effector protein YopTpCD1 CDS47155 969 - 0.431373
ypkA YP_pCD13 putative targeted effector protein kinase YpkApCD1 CDS7204 2199 + 0.481583
yscA YP_pCD33 hypothetical protein YscApCD1 CDS23771 99 - 0.313131
yscB YP_pCD32 hypothetical proteinpCD1 CDS23132 414 - 0.417874
yscC YP_pCD31 putative type III secretion protein YscCpCD1 CDS21303 1824 - 0.454496
yscD YP_pCD30 putative type III secretion protein YscDpCD1 CDS20047 1260 - 0.46746
yscD YP_pCD30 pCD1 misc_feature20869 69 - 0.449275
yscE YP_pCD29 putative type III secretion protein YscEpCD1 CDS19850 201 - 0.422886
yscF YP_pCD28 putative type III secretion protein YscFpCD1 CDS19586 264 - 0.416667
yscG YP_pCD27 putative type III secretion protein YscGpCD1 CDS19237 348 - 0.439655
yscH YP_pCD26 putative type III secretion protein YscHpCD1 CDS18743 498 - 0.429719
yscI YP_pCD25 putative type III secretion protein YscIpCD1 CDS18395 348 - 0.468391
yscJ YP_pCD24 pCD1 misc_feature17671 67 - 0.373134
yscJ YP_pCD24 putative type III secretion lipoprotein YscJpCD1 CDS17654 735 - 0.428571
yscK YP_pCD23 putative type III secretion protein YscKpCD1 CDS17025 651 - 0.483871
yscL YP_pCD22 type III secretion proteinpCD1 CDS16414 666 - 0.447447
yscM YP_pCD21 putative type III secretion regulatory protein YscMpCD1 CDS15842 348 - 0.479885
yscN YP_pCD43 type III secretion system ATPasepCD1 CDS31370 1320 - 0.508333
yscO YP_pCD42 putative type III secretion protein YscOpCD1 CDS30909 465 - 0.458065
yscP YP_pCD41 putative type III secretion protein YscPpCD1 CDS29542 1368 - 0.486842
yscQ YP_pCD40 type III secretion proteinpCD1 CDS28622 924 - 0.481602
yscR YP_pCD39 putative Yop secretion membrane protein YscRpCD1 CDS27972 654 - 0.43578
yscR YP_pCD39 pCD1 misc_feature28083 69 - 0.362319
yscR YP_pCD39 pCD1 misc_feature28407 69 - 0.478261
yscR YP_pCD39 pCD1 misc_feature28533 69 - 0.391304
yscS YP_pCD38 pCD1 misc_feature27761 69 - 0.521739
yscS YP_pCD38 type III secretion protein yscS YscSpCD1 CDS27704 267 - 0.453184
yscS YP_pCD38 pCD1 misc_feature27866 69 - 0.536232
yscT YP_pCD37 pCD1 misc_feature27246 69 - 0.42029
yscT YP_pCD37 putative type III secretion protein YscTpCD1 CDS26922 786 - 0.428753
yscT YP_pCD37 pCD1 misc_feature27615 66 - 0.393939
yscT YP_pCD37 pCD1 misc_feature27102 69 - 0.391304
yscT YP_pCD37 pCD1 misc_feature27537 60 - 0.45
yscT YP_pCD37 pCD1 misc_feature27000 69 - 0.449275
yscT YP_pCD37 pCD1 misc_feature27411 69 - 0.463768
yscU YP_pCD36 pCD1 misc_feature26299 69 - 0.42029
yscU YP_pCD36 pCD1 misc_feature26773 69 - 0.492754
yscU YP_pCD36 pCD1 misc_feature26620 69 - 0.42029
yscU YP_pCD36 putative type III secretion protein YscUpCD1 CDS25858 1065 - 0.431925
yscU YP_pCD36 pCD1 misc_feature26449 69 - 0.347826
yscV YP_pCD49 putative membrane-bound Yop protein YscVpCD1 CDS35078 2115 + 0.463357
yscV YP_pCD49 pCD1 misc_feature35204 69 + 0.362319
yscV YP_pCD49 pCD1 misc_feature35678 69 + 0.42029
yscV YP_pCD49 pCD1 misc_feature35780 69 + 0.536232
yscV YP_pCD49 pCD1 misc_feature35291 69 + 0.521739
yscV YP_pCD49 pCD1 misc_feature35135 61 + 0.540984
yscV YP_pCD49 pCD1 misc_feature35948 69 + 0.492754
yscV YP_pCD49 pCD1 misc_feature35402 69 + 0.449275
yscX YP_pCD47 putative type III secretion protein YscXpCD1 CDS34382 369 + 0.495935
yscY YP_pCD48 pCD1 misc_feature34753 318 + 0.471698
yscY YP_pCD48 putative type III secretion protein YscYpCD1 CDS34747 345 + 0.46087