Gene list
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Genomic element: pYV
Number of genes found: 103
Hide UniProt / TrEMBL protein name | View in Fasta format (DNA) | View in Fasta format (Protein) | ||||
Yersinia pseudotuberculosis IP 32953, IP 32953 | |||||||||
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Name | Locus tag | Product / Description | UniProt / TrEMBL protein name | Genomic element | Type | Begin | Length | Strand | GC-content |
NA | pYV0046 | putative transposase remnant | SubName: Full=Putative transposase remnant; | pYV | CDS | 32890 | 300 | + | 0.436667 |
NA | pYV0025 | putative outer membrane virulence protein | RecName: Full=Outer membrane virulence protein YopE; | pYV | CDS | 20483 | 660 | + | 0.510606 |
NA | pYV0074 | yscU; putative type III secretion protein | RecName: Full=Yop proteins translocation protein U; | pYV | CDS | 51210 | 1065 | + | 0.431925 |
NA | pYV0038 | pYV | pseudo | 27894 | 114 | - | 0.412281 | ||
NA | pYV0024 | sycE, yerA; putative yopE chaperone | SubName: Full=SycE, yerA putative yopE chaperone; | pYV | CDS | 19897 | 393 | - | 0.409669 |
NA | pYV0087 | yscK; putative type III secretion protein | RecName: Full=Yop proteins translocation protein K; AltName: Full=Low calcium response locus protein KB; | pYV | CDS | 60457 | 651 | + | 0.482335 |
NA | pYV0050 | hypothetical protein | SubName: Full=Uncharacterized protein; | pYV | CDS | 35445 | 123 | + | 0.463415 |
NA | pYV0030 | hypothetical protein | SubName: Full=Uncharacterized protein; | pYV | CDS | 22682 | 294 | - | 0.5 |
NA | pYV0049 | hypothetical protein | SubName: Full=Uncharacterized protein; | pYV | CDS | 35209 | 216 | - | 0.430556 |
NA | pYV0075 | virG; putative Yop targeting lipoprotein | SubName: Full=VirG putative Yop targeting lipoprotein; | pYV | CDS | 52850 | 396 | + | 0.444444 |
NA | pYV0012 | hypothetical protein | SubName: Full=Uncharacterized protein; | pYV | CDS | 8771 | 210 | - | 0.447619 |
NA | pYV0068 | yscO; putative type III secretion protein | RecName: Full=Yop proteins translocation protein O; | pYV | CDS | 46759 | 465 | + | 0.455914 |
NA | pYV0081 | yscE; putative type III secretion protein | SubName: Full=YscE putative type III secretion protein; | pYV | CDS | 58082 | 201 | + | 0.422886 |
NA | pYV0059 | lcrR; hypothetical protein lcrR | RecName: Full=Low calcium response locus protein R; | pYV | CDS | 40503 | 441 | - | 0.489796 |
NA | pYV0095 | putative transposase | SubName: Full=Putative transposase; | pYV | CDS | 66153 | 537 | + | 0.489758 |
NA | pYV0007 | repB, repA2, copB; putative replication transcriptional regulator | SubName: Full=RepB, repA2, copB putative replication transcriptional regulator; | pYV | CDS | 5998 | 255 | - | 0.423529 |
NA | pYV0023 | possible transposase remnant | SubName: Full=Possible transposase remnant; | pYV | CDS | 19220 | 615 | + | 0.55122 |
NA | pYV0004 | hypothetical protein | SubName: Full=Uncharacterized protein; | pYV | CDS | 3411 | 240 | - | 0.504167 |
NA | pYV0093 | putative transposase | SubName: Full=Putative transposase; | pYV | CDS | 63966 | 180 | + | 0.472222 |
NA | pYV0071 | yscR; putative Yop secretion membrane protein | RecName: Full=Yop proteins translocation protein R; | pYV | CDS | 49507 | 654 | + | 0.43578 |
NA | pYV0070 | yscQ; putative type III secretion protein | RecName: Full=Yop proteins translocation protein Q; | pYV | CDS | 48587 | 924 | + | 0.481602 |
NA | pYV0090 | putative transposase | RecName: Full=Low calcium response locus protein S; | pYV | CDS | 62838 | 267 | + | 0.434457 |
NA | pYV0003 | putative transposase remnant | SubName: Full=Putative transposase remnant; | pYV | CDS | 2919 | 321 | - | 0.510903 |
NA | pYV0051 | hypothetical protein | RecName: Full=Uncharacterized protein pYV0051; | pYV | CDS | 35593 | 324 | + | 0.382716 |
NA | pYV0094 | yopH; putative protein-tyrosine phosphatase Yop effector | RecName: Full=Tyrosine-protein phosphatase YopH; EC=3.1.3.48; AltName: Full=Virulence protein; | pYV | CDS | 64366 | 1407 | - | 0.474058 |
NA | pYV0005 | repA, repA1; putative replication initiation protein | SubName: Full=RepA, repA1 putative replication initiation protein; | pYV | CDS | 4823 | 879 | - | 0.5438 |
NA | pYV0098 | yopP, yopJ; putative targeted effector protein | RecName: Full=Effector protein YopJ; AltName: Full=Virulence factor YopJ; | pYV | CDS | 67275 | 867 | - | 0.346021 |
NA | pYV0048 | hypothetical protein | SubName: Full=Uncharacterized protein; | pYV | CDS | 35009 | 96 | - | 0.40625 |
NA | pYV0076 | lcrF, virF; putative thermoregulatory protein | SubName: Full=LcrF, virF putative thermoregulatory protein; | pYV | CDS | 53369 | 816 | + | 0.416667 |
NA | pYV0006 | hypothetical protein | SubName: Full=Uncharacterized protein; | pYV | CDS | 5803 | 153 | + | 0.490196 |
NA | pYV0088 | yscL; putative type III secretion protein | RecName: Full=Yop proteins translocation protein L; AltName: Full=Low calcium response locus protein KC; | pYV | CDS | 61086 | 633 | + | 0.450237 |
NA | pYV0089 | yscM, lcrQ; putative type III secretion regulatory | RecName: Full=Yop proteins translocation protein M; AltName: Full=Low calcium response locus protein Q; | pYV | CDS | 61943 | 348 | + | 0.479885 |
NA | pYV0053 | hypothetical protein | SubName: Full=Uncharacterized protein; | pYV | CDS | 36160 | 168 | + | 0.428571 |
NA | pYV0043 | possible transposase remnant | SubName: Full=Possible transposase remnant; SubName: Full=Uncharacterized protein; | pYV | CDS | 31368 | 192 | + | 0.458333 |
NA | pYV0014 | pYV | pseudo | 11010 | 225 | + | 0.524444 | ||
NA | pYV0045 | hypothetical protein | SubName: Full=Possible transposase remnant; SubName: Full=Uncharacterized protein; | pYV | CDS | 32524 | 192 | - | 0.458333 |
NA | pYV0015 | pYV | pseudo | 11219 | 171 | + | 0.48538 | ||
NA | pYV0084 | yscH, yopR, lcrP; putative type III secretion protein | RecName: Full=Yop proteins translocation protein H; AltName: Full=Low calcium response locus protein P; | pYV | CDS | 58892 | 498 | + | 0.427711 |
NA | pYV0013 | hypothetical protein | RecName: Full=Adhesin YadA; Flags: Precursor; | pYV | CDS | 9103 | 1299 | - | 0.43341 |
NA | pYV0029 | hypothetical protein | SubName: Full=Uncharacterized protein; | pYV | CDS | 22359 | 174 | + | 0.471264 |
NA | pYV0062 | yscX; putative type III secretion protein | SubName: Full=YscX putative type III secretion protein; | pYV | CDS | 43382 | 369 | - | 0.495935 |
NA | pYV0096 | transposase, IS630 family | SubName: Full=Transposase, IS630 family; | pYV | CDS | 66691 | 129 | - | 0.434109 |
NA | pYV0058 | lcrG; putative Yop regulator | RecName: Full=Low calcium response locus protein G; | pYV | CDS | 40174 | 288 | - | 0.465278 |
NA | pYV0027 | hypothetical protein | SubName: Full=Uncharacterized protein; | pYV | CDS | 21574 | 276 | - | 0.434783 |
NA | pYV0042 | yopT chaperone | SubName: Full=YopT chaperone; | pYV | CDS | 30481 | 393 | + | 0.414758 |
NA | pYV0044 | hypothetical protein | SubName: Full=Uncharacterized protein; | pYV | CDS | 31576 | 420 | + | 0.388095 |
NA | pYV0041 | yop targeted effector yopT | RecName: Full=Cysteine protease YopT; EC=3.4.22.-; | pYV | CDS | 29513 | 969 | + | 0.430341 |
NA | pYV0015 | pYV | pseudo | 11219 | 171 | + | 0.48538 | ||
NA | pYV0035 | hypothetical protein | SubName: Full=Uncharacterized protein; | pYV | CDS | 26357 | 459 | - | 0.551198 |
NA | pYV0017 | putative resolvase | SubName: Full=Putative resolvase; | pYV | CDS | 13865 | 552 | + | 0.46558 |
NA | pYV0092 | putative transposase | SubName: Full=Putative transposase; | pYV | CDS | 63559 | 402 | + | 0.470149 |
NA | pYV0026 | hypothetical protein | SubName: Full=Uncharacterized protein; | pYV | CDS | 21282 | 300 | - | 0.38 |
NA | pYV0083 | yscG; putative type III secretion protein | SubName: Full=YscG putative type III secretion protein; | pYV | CDS | 58548 | 348 | + | 0.442529 |
NA | pYV0063 | sycN; putative type III secretion protein | RecName: Full=Chaperone protein SycN; | pYV | CDS | 43747 | 372 | - | 0.524194 |
NA | pYV0016 | tnpA; putative transposase protein | SubName: Full=TnpA putative transposase protein; | pYV | CDS | 11386 | 2316 | - | 0.51943 |
NA | pYV0052 | hypothetical protein | SubName: Full=Uncharacterized protein; | pYV | CDS | 35951 | 123 | + | 0.479675 |
NA | pYV0040 | yop targeting protein yopK, yopQ | SubName: Full=Yop targeting protein yopK, yopQ; | pYV | CDS | 28491 | 549 | - | 0.333333 |
NA | pYV0054 | yopD; putative Yop negative regulation/targeting component | RecName: Full=Protein YopD; | pYV | CDS | 36551 | 921 | - | 0.431053 |
NA | pYV0038 | pYV | pseudo | 27894 | 114 | - | 0.412281 | ||
NA | pYV0020 | sycH; putative yopH targeting protein | SubName: Full=SycH putative yopH targeting protein; | pYV | CDS | 16714 | 426 | - | 0.41784 |
NA | pYV0011 | possible transposase remname | SubName: Full=Possible transposase remname; | pYV | CDS | 8586 | 189 | + | 0.492063 |
NA | pYV0014 | pYV | pseudo | 11010 | 225 | + | 0.524444 | ||
NA | pYV0072 | yscS; putative type III secretion protein | RecName: Full=Yop proteins translocation protein S; | pYV | CDS | 50162 | 267 | + | 0.453184 |
NA | pYV0097 | hypothetical protein | SubName: Full=Uncharacterized protein; | pYV | CDS | 66902 | 93 | - | 0.387097 |
NA | pYV0085 | yscI, lcrO; putative type III secretion protein | RecName: Full=Yop proteins translocation protein I; AltName: Full=Low calcium response locus protein O; | pYV | CDS | 59390 | 348 | + | 0.468391 |
NA | pYV0065 | yopN, lcrE; putative membrane-bound Yop targeting protein | RecName: Full=Outer membrane protein YopN; AltName: Full=LcrE; AltName: Full=Yop4b; | pYV | CDS | 44364 | 882 | - | 0.460317 |
NA | pYV0078 | hypothetical protein | SubName: Full=Uncharacterized protein; | pYV | CDS | 54587 | 414 | + | 0.42029 |
NA | pYV0032 | sopA; putative plasmid partitioning transcription repressor | SubName: Full=SopA putative plasmid partitioning transcription repressor; | pYV | CDS | 24085 | 1209 | - | 0.434243 |
NA | pYV0036 | hypothetical protein | SubName: Full=Uncharacterized protein; | pYV | CDS | 26842 | 261 | - | 0.509579 |
NA | pYV0055 | yopB; putative Yop targeting protein | RecName: Full=Protein YopB; | pYV | CDS | 37490 | 1206 | - | 0.466003 |
NA | pYV0001 | ypkA; putative targeted effector protein kinase | RecName: Full=Protein kinase YpkA; Short=Protein kinase A; EC=2.7.11.1; AltName: Full=Targeted effector protein kinase; Flags: Precursor; | pYV | CDS | 12 | 2199 | - | 0.482947 |
NA | pYV0077 | hypothetical protein | SubName: Full=Uncharacterized protein; | pYV | CDS | 54263 | 99 | + | 0.323232 |
NA | pYV0010 | hypothetical protein | SubName: Full=Uncharacterized protein; | pYV | CDS | 7978 | 459 | - | 0.555556 |
NA | pYV0033 | hypothetical protein | SubName: Full=Uncharacterized protein; | pYV | CDS | 25800 | 114 | + | 0.561404 |
NA | pYV0002 | hypothetical protein | SubName: Full=Uncharacterized protein; | pYV | CDS | 2218 | 450 | - | 0.453333 |
NA | pYV0079 | yscC; putative type III secretion protein | SubName: Full=YscC putative type III secretion protein; | pYV | CDS | 55006 | 1824 | + | 0.453947 |
NA | pYV0082 | yscF; putative type III secretion protein | SubName: Full=YscF putative type III secretion protein; | pYV | CDS | 58283 | 264 | + | 0.416667 |
NA | pYV0021 | putative transposase | SubName: Full=Putative transposase; | pYV | CDS | 17484 | 432 | - | 0.571759 |
NA | pYV0066 | hypothetical protein | SubName: Full=Uncharacterized protein; | pYV | CDS | 45305 | 105 | + | 0.390476 |
NA | pYV0039 | putative transposase | SubName: Full=Putative transposase; | pYV | CDS | 28171 | 183 | - | 0.513661 |
NA | pYV0067 | putative Yops secretion ATP synthase | RecName: Full=Probable ATP synthase YscN; EC=3.6.3.14; AltName: Full=Yop proteins secretion ATPase; | pYV | CDS | 45443 | 1320 | + | 0.508333 |
NA | pYV0086 | yscJ, ylpB; putative type III secretion lipoprotein | RecName: Full=Yop proteins translocation lipoprotein J; AltName: Full=Lipoprotein YlpB; AltName: Full=Low calcium response locus protein KA; Flags: Precursor; | pYV | CDS | 59744 | 735 | + | 0.428571 |
NA | pYV0028 | putative transposase remnant | SubName: Full=Putative transposase remnant; | pYV | CDS | 21960 | 204 | - | 0.480392 |
NA | pYV0008 | possible transposase remnant | SubName: Full=Possible transposase remnant; | pYV | CDS | 6779 | 405 | + | 0.516049 |
NA | pYV0073 | yscT; putative type III secretion protein | RecName: Full=Yop proteins translocation protein T; | pYV | CDS | 50425 | 786 | + | 0.428753 |
NA | pYV0022 | putative transposase | SubName: Full=Putative transposase; | pYV | CDS | 17915 | 1173 | - | 0.544757 |
NA | pYV0031 | sopB; putative plasmid partitioning control protein | SubName: Full=SopB putative plasmid partitioning control protein; | pYV | CDS | 23123 | 966 | - | 0.415114 |
NA | pYV0057 | lcrV; putative V antigen, antihost protein/regulator | RecName: Full=Virulence-associated V antigen; AltName: Full=Low calcium response locus protein V; | pYV | CDS | 39192 | 981 | - | 0.372069 |
NA | pYV0080 | yscD; putative type III secretion protein | SubName: Full=YscD putative type III secretion protein; | pYV | CDS | 56826 | 1260 | + | 0.468254 |
NA | pYV0069 | yscP; putative type III secretion protein | RecName: Full=Yop proteins translocation protein P; | pYV | CDS | 47223 | 1368 | + | 0.487573 |
NA | pYV0099 | hypothetical protein | SubName: Full=Uncharacterized protein; | pYV | CDS | 68142 | 135 | - | 0.392593 |
NA | pYV0064 | tyeA; putative Yop secretion and targeting protein | RecName: Full=Protein TyeA; | pYV | CDS | 44105 | 279 | - | 0.433692 |
NA | pYV0037 | pYV | pseudo | 27269 | 606 | - | 0.486799 | ||
NA | pYV0037 | pYV | pseudo | 27269 | 606 | - | 0.486799 | ||
NA | pYV0018 | putative transposase | SubName: Full=Putative transposase; SubName: Full=Putative transposase (Putative IS1617 trans-TRUNCATED-); | pYV | CDS | 15467 | 267 | + | 0.479401 |
NA | pYV0056 | lcrH, sycD; low calcium response protein H | RecName: Full=Low calcium response locus protein H; | pYV | CDS | 38673 | 507 | - | 0.441815 |
NA | pYV0047 | yopM; putative targeted effector protein | SubName: Full=YopM putative targeted effector protein; | pYV | CDS | 33232 | 1653 | - | 0.395644 |
NA | pYV0019 | putative transposase | SubName: Full=Putative transposase; | pYV | CDS | 15757 | 810 | + | 0.507407 |
NA | pYV0091 | putative transposase | RecName: Full=Low calcium response locus protein T; | pYV | CDS | 63140 | 423 | + | 0.453901 |
NA | pYV0034 | putative transposase remnant | SubName: Full=Putative transposase remnant; | pYV | CDS | 26051 | 195 | - | 0.497436 |
NA | pYV0061 | yscY; putative type III secretion protein | SubName: Full=YscY putative type III secretion protein; | pYV | CDS | 43041 | 345 | - | 0.46087 |
NA | pYV0060 | lcrD, yscV; putative membrane-bound Yop protein | RecName: Full=Low calcium response locus protein D; | pYV | CDS | 40940 | 2115 | - | 0.46383 |
NA | pYV0009 | hyothetical protein | SubName: Full=Hyothetical protein; | pYV | CDS | 7489 | 318 | - | 0.493711 |