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2024-06-16 14:43:08

Gene list

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Genomic element: pMT1

Number of genes found: 203

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Yersinia pestis CO92, CO92
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
NA YPMT1.54 hypothetical proteinSubName: Full=Uncharacterized protein; pMT1 CDS55745 564 + 0.512411
NA pMT1 repeat_region47970 20 + 0.45
NA YPMT1.74 pMT1 RBS74595 5 + 0.6
NA pMT1 repeat_region48010 20 + 0.5
NA YPMT1.3Ac SubName: Full=Uncharacterized protein; pMT1 misc_feature2723 213 - 0.42723
NA YPMT1.86c hypothetical proteinSubName: Full=Uncharacterized protein; pMT1 CDS88320 387 - 0.496124
NA pMT1 repeat_region47632 19 + 0.421053
NA YPMT1.77c SubName: Full=YPMT1.77c protein; Flags: Fragment; pMT1 misc_feature77583 84 - 0.416667
NA pMT1 repeat_region46406 20 + 0.5
NA pMT1 rep_origin70063 274 - 0.405109
NA YPMT1.86A hypothetical proteinSubName: Full=Uncharacterized protein; pMT1 CDS88969 213 + 0.43662
NA YPMT1.58c transposaseSubName: Full=IS transposase; SubName: Full=ORF 78; SubName: Full=ORF12; SubName: Full=Putative transposase; SubName: Full=Putative transposase, N end of IS100 transframe protein; SubName: Full=Putative transposase-orf1 protein; SubName: Full=Transposase; SubName: Full=Transposase for insertion sequence IS100; pMT1 CDS58112 1023 - 0.527859
NA YPMT1.42 putative periplasmic proteinSubName: Full=Hypothetical lipoprotein; SubName: Full=Putative lipoprotein; SubName: Full=Putative periplasmic protein; pMT1 CDS43716 1023 + 0.449658
NA pMT1 repeat_region65383 26 + 0.730769
NA pMT1 repeat_region46005 19 + 0.526316
NA YPMT1.50Ac hypothetical proteinSubName: Full=Uncharacterized protein; pMT1 CDS52350 267 - 0.546816
NA pMT1 repeat_region46388 19 + 0.526316
NA pMT1 repeat_region47800 19 - 0.473684
NA pMT1 repeat_region47552 20 + 0.45
NA YPMT1.07c putative phage tail proteinSubName: Full=Phage lambda tail assembly protein I; SubName: Full=Putative phage tail protein; SubName: Full=Uncharacterized protein; pMT1 CDS11189 588 - 0.527211
NA YPMT1.46c hypothetical proteinSubName: Full=Uncharacterized protein; pMT1 CDS48332 336 - 0.505952
NA YPMT1.59c putative DNA-binding proteinSubName: Full=Putative DNA-binding protein; SubName: Full=Uncharacterized protein; pMT1 CDS59258 2010 - 0.61393
NA YPMT1.09c pMT1 RBS12571 4 - 0.75
NA YPMT1.30 hypothetical proteinSubName: Full=Uncharacterized protein; pMT1 CDS32138 1560 + 0.514103
NA YPMT1.81c putative F1 operon positive regulatory proteinRecName: Full=F1 operon positive regulatory protein; pMT1 CDS81334 924 - 0.333333
NA pMT1 repeat_region45981 20 + 0.4
NA YPMT1.61N hypothetical protein pMT1 CDS62997 351 + 0.595442
NA YPMT1.16c pMT1 RBS20241 4 - 0.75
NA YPMT1.65 hypothetical proteinSubName: Full=Uncharacterized protein; pMT1 CDS65742 309 + 0.504854
NA YPMT1.51c putative exonucleaseSubName: Full=Putative exonuclease; SubName: Full=Uncharacterized protein; pMT1 CDS52616 945 - 0.526984
NA pMT1 repeat_region47762 19 - 0.421053
NA YPMT1.33 putative transcriptional regulatorSubName: Full=Putative transcriptional regulator; SubName: Full=Repressor of phase 1 fagellin homolog; pMT1 CDS34465 528 + 0.517045
NA YPMT1.40c putative exonuclease subunit 2SubName: Full=Putative exonuclease subunit 2; pMT1 CDS40069 1917 - 0.529995
NA YPMT1.80c putative transposaseSubName: Full=Putative transposase; SubName: Full=Transposase; SubName: Full=Transposase for the IS285 insertion element; pMT1 CDS79777 1209 - 0.496278
NA YPMT1.12c hypothetical proteinSubName: Full=Uncharacterized protein; pMT1 CDS18304 270 - 0.551852
NA pMT1 RBS39329 5 - 0.6
NA YPMT1.69 hypothetical proteinSubName: Full=Inner membrane protein; SubName: Full=Uncharacterized protein; pMT1 CDS70690 327 + 0.434251
NA YPMT1.64c putative DNA methylaseSubName: Full=Adenine-specific methyltransferase; SubName: Full=Putative DNA methylase; SubName: Full=Putative hemagglutinin-associated protein; SubName: Full=Uncharacterized protein; pMT1 CDS64672 678 - 0.581121
NA pMT1 RBS49999 6 - 0.5
NA pMT1 repeat_region48050 20 + 0.4
NA pMT1 repeat_region46428 20 + 0.35
NA pMT1 RBS34021 4 + 0.5
NA YPMT1.46c pMT1 RBS48340 6 - 0.666667
NA YPMT1.09c minor tail fiber protein LSubName: Full=Lambda minor tail fiber protein L; SubName: Full=Putative phage tail protein; pMT1 CDS12554 732 - 0.52459
NA YPMT1.49Ac hypothetical proteinSubName: Full=Uncharacterized protein; pMT1 CDS50980 201 - 0.447761
NA YPMT1.55c hypothetical proteinSubName: Full=Uncharacterized protein; pMT1 CDS56338 444 - 0.518018
NA pMT1 repeat_region48094 19 - 0.578947
NA pMT1 RBS2639 5 - 0.6
NA YPMT1.47c hypothetical proteinSubName: Full=Uncharacterized protein; pMT1 CDS49227 411 - 0.559611
NA pMT1 RBS41992 4 - 0.75
NA YPMT1.11c hypothetical proteinSubName: Full=Protein HI1514 homolog; SubName: Full=Putative membrane protein; SubName: Full=Uncharacterized protein; pMT1 CDS13719 4578 - 0.56706
NA YPMT1.32 putative lipoproteinSubName: Full=Putative lipoprotein; SubName: Full=Uncharacterized protein; pMT1 CDS34038 423 + 0.541371
NA pMT1 repeat_region47926 19 - 0.421053
NA YPMT1.23c hypothetical proteinSubName: Full=Uncharacterized protein; pMT1 CDS24949 1590 - 0.509434
NA YPMT1.39c hypothetical proteinSubName: Full=Uncharacterized protein; pMT1 CDS39333 747 - 0.497992
NA pMT1 repeat_region47839 19 - 0.421053
NA pMT1 repeat_region46025 20 + 0.45
NA YPMT1.17c hypothetical proteinSubName: Full=Uncharacterized protein; pMT1 CDS20701 459 - 0.535948
NA YPMT1.57c transposase/IS proteinSubName: Full=ATP-binding protein; SubName: Full=IS transposase; SubName: Full=Insertion sequence IS100, ATP-binding protein; SubName: Full=Putative ATP-binding protein; SubName: Full=Putative IS100 transposase; SubName: Full=Putative transposase; SubName: Full=Putative transposase ATP-binding protein; SubName: Full=Putative transposase C end of IS100 transframe protein; SubName: Full=Putative transposase-orf2 protein; SubName: Full=Uncharacterized protein; pMT1 CDS57333 783 - 0.50447
NA YPMT1.45c hypothetical proteinSubName: Full=Hypothetical regulator; SubName: Full=Uncharacterized protein; pMT1 CDS48120 216 - 0.550926
NA pMT1 misc_feature81056 15125 + 0.46519
NA pMT1 repeat_region46346 19 + 0.368421
NA YPMT1.50c putative recombinaseSubName: Full=Putative recombinase; pMT1 CDS51271 1077 - 0.545961
NA YPMT1.18c hypothetical proteinSubName: Full=Uncharacterized protein; pMT1 CDS21143 834 - 0.544365
NA pMT1 misc_feature59221 22286 + 0.4965
NA YPMT1.34A hypothetical proteinSubName: Full=Uncharacterized protein; pMT1 CDS36049 228 + 0.372807
NA pMT1 repeat_region46322 20 + 0.35
NA YPMT1.04c putative phage tail protein pMT1 CDS2932 2937 - 0.49983
NA YPMT1.78 pMT1 pseudo77764 324 + 0.484568
NA pMT1 repeat_region47765 20 + 0.4
NA YPMT1.76 hypothetical proteinSubName: Full=Uncharacterized protein; pMT1 CDS76996 309 + 0.566343
NA YPMT1.15c hypothetical proteinSubName: Full=Uncharacterized protein; pMT1 CDS19852 384 - 0.466146
NA YPMT1.28c pMT1 RBS30784 5 - 0.8
NA pMT1 RBS37893 5 - 0.8
NA YPMT1.19c hypothetical proteinSubName: Full=Uncharacterized protein; pMT1 CDS21976 435 - 0.51954
NA pMT1 misc_feature57267 23790 + 0.499496
NA YPMT1.49Ac pMT1 RBS50985 6 - 0.5
NA YPMT1.62c hypothetical proteinSubName: Full=Uncharacterized protein; pMT1 CDS63188 780 - 0.552564
NA YPMT1.64N hypothetical protein pMT1 CDS64969 528 + 0.566288
NA YPMT1.46Bc hypothetical proteinSubName: Full=Uncharacterized protein; pMT1 CDS48884 276 - 0.467391
NA YPMT1.43c hypothetical proteinSubName: Full=Uncharacterized protein; pMT1 CDS45098 645 - 0.528682
NA pMT1 RBS79317 5 - 0.8
NA YPMT1.21c hypothetical proteinSubName: Full=Uncharacterized protein; pMT1 CDS23191 876 - 0.539954
NA pMT1 misc_feature67864 25 - 0.4
NA YPMT1.35c hypothetical proteinSubName: Full=Uncharacterized protein; pMT1 CDS36915 483 - 0.503106
NA YPMT1.25c hypothetical proteinSubName: Full=Uncharacterized protein; pMT1 CDS27816 642 - 0.556075
NA YPMT1.34 hypothetical proteinSubName: Full=Uncharacterized protein; pMT1 CDS35314 651 + 0.394777
NA YPMT1.52c hypothetical proteinSubName: Full=P2 protein homolog; SubName: Full=Uncharacterized protein; pMT1 CDS53621 1029 - 0.519922
NA YPMT1.70 putative resolvaseSubName: Full=Putative resolvase; SubName: Full=Putative site-specific recombinase; pMT1 CDS71216 621 + 0.495974
NA pMT1 RBS23123 5 - 0.6
NA pMT1 repeat_region47889 20 + 0.5
NA pMT1 repeat_region45939 20 + 0.5
NA YPMT1.26c hypothetical proteinSubName: Full=Uncharacterized protein; pMT1 CDS28929 900 - 0.556667
NA pMT1 RBS36037 5 + 0.6
NA pMT1 repeat_region46431 19 + 0.368421
NA YPMT1.53c hypothetical proteinSubName: Full=Uncharacterized protein; pMT1 CDS54769 474 - 0.5
NA pMT1 repeat_region45985 19 + 0.421053
NA YPMT1.04c pMT1 RBS5826 5 - 0.6
NA pMT1 repeat_region65591 26 - 0.730769
NA YPMT1.34N hypothetical protein pMT1 CDS36577 360 + 0.563889
NA YPMT1.22c hypothetical proteinSubName: Full=Uncharacterized protein; pMT1 CDS24093 834 - 0.556355
NA YPMT1.41c putative exonuclease subunit 1SubName: Full=Putative exonuclease subunit 1; SubName: Full=Uncharacterized protein; pMT1 CDS42215 1086 - 0.540516
NA YPMT1.68A hypothetical proteinSubName: Full=Prevent-host-death family protein; SubName: Full=Uncharacterized protein; pMT1 CDS70463 228 + 0.434211
NA pMT1 repeat_region46002 20 + 0.5
NA YPMT1.38c hypothetical proteinSubName: Full=Uncharacterized protein; pMT1 CDS38751 570 - 0.52807
NA YPMT1.84 F1 capsule antigenRecName: Full=F1 capsule antigen; Flags: Precursor; pMT1 CDS85950 513 + 0.42885
NA YPMT1.63c hypothetical protein pMT1 CDS64021 420 - 0.57619
NA pMT1 RBS73150 5 - 0.8
NA YPMT1.28c hypothetical proteinSubName: Full=Uncharacterized protein; pMT1 CDS30707 669 - 0.559043
NA pMT1 misc_feature48269 8998 + 0.507335
NA YPMT1.40Ac hypothetical proteinSubName: Full=Uncharacterized protein; pMT1 CDS41994 225 - 0.484444
NA YPMT1.26Ac hypothetical proteinSubName: Full=Uncharacterized protein; pMT1 CDS29825 255 - 0.52549
NA YPMT1.74 murine toxin pMT1 CDS74447 1764 + 0.380385
NA pMT1 repeat_region46385 20 + 0.4
NA YPMT1.02 transposase/IS protein pMT1 CDS1109 780 + 0.503846
NA YPMT1.85 SubName: Full=Putative integrase; SubName: Full=Uncharacterized protein; pMT1 misc_feature87147 1179 + 0.478372
NA YPMT1.35N hypothetical protein pMT1 CDS37410 234 - 0.529915
NA YPMT1.10c minor tail fiber protein MSubName: Full=Lambda minor tail fiber protein M; SubName: Full=Phage lambda-related tail protein M; SubName: Full=Putative phage tail protein; SubName: Full=Uncharacterized protein; pMT1 CDS13342 336 - 0.488095
NA pMT1 repeat_region47581 20 + 0.6
NA YPMT1.72c hypothetical proteinSubName: Full=Uncharacterized protein; pMT1 CDS72866 276 - 0.518116
NA pMT1 repeat_region47620 20 + 0.45
NA YPMT1.08c putative phage tail proteinSubName: Full=Putative phage tail protein; pMT1 CDS11764 798 - 0.551378
NA YPMT1.76A hypothetical proteinSubName: Full=Uncharacterized protein; pMT1 CDS77219 372 + 0.526882
NA YPMT1.60c hypothetical proteinRecName: Full=UPF0401 protein YubL; pMT1 CDS61340 231 - 0.593074
NA pMT1 repeat_region45960 20 + 0.45
NA YPMT1.13c hypothetical proteinSubName: Full=Uncharacterized protein; pMT1 CDS18654 318 - 0.5
NA pMT1 repeat_region45963 19 + 0.421053
NA pMT1 repeat_region47585 18 + 0.611111
NA pMT1 repeat_region57266 1955 - 0.514578
NA YPMT1.41c pMT1 RBS42223 5 - 0.8
NA YPMT1.29c hypothetical proteinSubName: Full=Uncharacterized protein; pMT1 CDS31375 699 - 0.527897
NA pMT1 RBS53568 5 - 0.6
NA pMT1 repeat_region46364 20 + 0.45
NA YPMT1.14c hypothetical proteinSubName: Full=Uncharacterized protein; pMT1 CDS19031 747 - 0.535475
NA YPMT1.63Ac hypothetical proteinSubName: Full=Putative cytoplasmic protein; SubName: Full=Uncharacterized protein; pMT1 CDS64451 222 - 0.536036
NA pMT1 repeat_region47929 20 + 0.4
NA pMT1 repeat_region62824 31 + 0.709677
NA YPMT1.61c antirestriction proteinSubName: Full=Antirestriction protein; SubName: Full=Antirestriction protein ArdA; SubName: Full=Antirestriction protein homolog; SubName: Full=Putative antirestriction protein; pMT1 CDS62283 507 - 0.538462
NA pMT1 repeat_region1 1954 + 0.51433
NA YPMT1.46Ac hypothetical proteinSubName: Full=Uncharacterized protein; pMT1 CDS48664 180 - 0.455556
NA YPMT1.25Ac hypothetical proteinSubName: Full=RGD cell attachment site containing protein; SubName: Full=Uncharacterized protein; pMT1 CDS28653 267 - 0.524345
NA pMT1 repeat_region46323 21 + 0.333333
NA pMT1 repeat_region46343 20 + 0.4
NA pMT1 repeat_region47656 19 + 0.526316
NA YPMT1.89 pMT1 pseudo93170 3039 + 0.549852
NA YPMT1.48c pMT1 RBS49645 5 - 0.6
NA pMT1 misc_feature1 96210 + 0.502276
NA YPMT1.66c putative DNA-binding proteinSubName: Full=Putative DNA-binding protein; SubName: Full=Uncharacterized protein; pMT1 CDS66212 1398 - 0.483548
NA YPMT1.24c hypothetical proteinSubName: Full=Uncharacterized protein; pMT1 CDS26557 1257 - 0.540971
NA pMT1 repeat_region47803 20 + 0.5
NA pMT1 repeat_region47967 19 - 0.368421
NA pMT1 repeat_region48047 19 - 0.368421
NA pMT1 repeat_region73437 36 - 0.388889
NA YPMT1.89 pMT1 pseudo93170 3039 + 0.549852
NA YPMT1.75c reverse transcriptaseSubName: Full=Uncharacterized protein; pMT1 CDS76455 471 - 0.558386
NA YPMT1.27c putative ABC transporter ATP-binding protein pMT1 CDS30072 639 - 0.549296
NA YPMT1.01 putative transposaseSubName: Full=IS transposase; SubName: Full=ORF 78; SubName: Full=ORF12; SubName: Full=Putative transposase; SubName: Full=Putative transposase, N end of IS100 transframe protein; SubName: Full=Putative transposase-orf1 protein; SubName: Full=Transposase; SubName: Full=Transposase for insertion sequence IS100; pMT1 CDS87 1023 + 0.527859
NA pMT1 repeat_region48097 20 + 0.6
NA pMT1 rep_origin46207 1910 + 0.495812
NA YPMT1.73 putative phospholipase DSubName: Full=Putative endonuclease; SubName: Full=Uncharacterized protein; pMT1 CDS73881 489 + 0.435583
NA pMT1 repeat_region47904 23 + 0.608696
NA YPMT1.37c putative transposase pMT1 CDS38084 510 - 0.458824
NA pMT1 misc_feature1 57266 + 0.513167
NA pMT1 repeat_region37976 717 - 0.460251
NA pMT1 misc_feature1 48266 + 0.514275
NA pMT1 RBS54656 5 - 0.6
NA YPMT1.50Ac pMT1 RBS52355 5 - 0.6
NA pMT1 repeat_region79742 1316 - 0.488602
NA pMT1 repeat_region48007 19 - 0.368421
NA pMT1 repeat_region47555 19 + 0.368421
NA pMT1 repeat_region63038 31 - 0.645161
NA YPMT1.36c hypothetical proteinSubName: Full=Uncharacterized protein; pMT1 CDS37603 288 - 0.524306
NA YPMT1.79c transposaseSubName: Full=Putative transposase; SubName: Full=Transposase; pMT1 CDS78286 1023 - 0.519062
NA pMT1 RBS82553 6 + 0.666667
NA YPMT1.42Ac hypothetical proteinSubName: Full=Uncharacterized protein; pMT1 CDS44876 147 - 0.455782
NA YPMT1.49c putative lipoproteinSubName: Full=Putative lipoprotein; SubName: Full=Putative serine protease; SubName: Full=Putative serine proteinase; pMT1 CDS50146 831 - 0.515042
NA pMT1 RBS6528 4 - 0.75
NA YPMT1.48c hypothetical proteinSubName: Full=Uncharacterized protein; pMT1 CDS49621 372 - 0.497312
NA pMT1 repeat_region45943 19 + 0.526316
NA YPMT1.16c hypothetical proteinSubName: Full=Uncharacterized protein; pMT1 CDS20237 474 - 0.544304
NA pMT1 repeat_region47653 20 + 0.45
NA pMT1 repeat_region46409 19 + 0.526316
NA YPMT1.31 hypothetical proteinSubName: Full=Uncharacterized protein; pMT1 CDS33700 279 + 0.458781
NA YPMT1.20c hypothetical proteinSubName: Full=Uncharacterized protein; pMT1 CDS22454 663 - 0.526395
NA pMT1 repeat_region73165 36 + 0.5
NA pMT1 repeat_region46028 19 + 0.473684
NA YPMT1.03c tail fiber assembly protein GSubName: Full=Lambda tail fiber assembly protein G; SubName: Full=Phage lambda-related tail assembly protein G; SubName: Full=Uncharacterized protein; pMT1 CDS2022 609 - 0.456486
NA YPMT1.06c host specificity protein JSubName: Full=Lambda host specificity protein J; SubName: Full=Phage lambda-related host specificity protein J; SubName: Full=Putative phage tail protein; pMT1 CDS6536 4638 - 0.526304
NA YPMT1.05c hypothetical proteinSubName: Full=Uncharacterized protein; pMT1 CDS5901 618 - 0.496764
NA pMT1 repeat_region47842 20 + 0.45
NA YPMT1.08c pMT1 RBS11784 6 - 0.666667
NA YPMT1.29c pMT1 RBS31384 5 - 0.6
NA YPMT1.71 hypothetical proteinSubName: Full=Putative transposase; SubName: Full=Uncharacterized protein; pMT1 CDS71857 987 + 0.507599
NA pMT1 repeat_region46367 19 + 0.421053
NA YPMT1.44 putative replication protein ASubName: Full=Putative replication protein A; SubName: Full=RepA homolog; SubName: Full=Replication protein A; pMT1 CDS46487 1065 + 0.514554
NA YPMT1.56c pMT1 pseudo56778 489 - 0.511247
caf1A YPMT1.83 putative F1 capsule anchoring proteinRecName: Full=F1 capsule-anchoring protein; Flags: Precursor; pMT1 CDS83368 2502 + 0.396083
caf1M YPMT1.82 putative F1 chaperone proteinRecName: Full=Chaperone protein caf1M; AltName: Full=Capsule protein fraction 1; Flags: Precursor; pMT1 CDS82567 777 + 0.405405
cobS YPMT1.88 porphyrin biosynthetic proteinSubName: Full=CobS homolog; SubName: Full=Putative porphyrin biosynthetic enzyme; SubName: Full=Putative porphyrin biosynthetic protein; pMT1 CDS91754 1236 + 0.526699
cobT YPMT1.87 porphyrin biosynthetic proteinSubName: Full=Putative porphyrin biosynthetic enzyme; SubName: Full=Putative porphyrin biosynthetic protein; pMT1 CDS89291 2367 + 0.52049
parA YPMT1.68c pMT1 misc_feature69611 551 - 0.441016
parA YPMT1.68c partitioning protein ASubName: Full=ParA homolog; SubName: Full=Putative partitioning protein A; pMT1 CDS68956 1206 - 0.451907
parB YPMT1.67c partitioning protein BSubName: Full=Chromosome partitioning protein ParB; SubName: Full=ParB homolog; SubName: Full=Partitioning protein; SubName: Full=Putative partitioning protein B; pMT1 CDS67988 972 - 0.447531