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2024-06-16 13:56:22

Gene list

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Genomic element: pCD1

Number of genes found: 162

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Yersinia pestis CO92, CO92
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
NA pCD1 repeat_region14444 275 + 0.443636
NA YPCD1.26.1n pCD1 misc_feature18189 667 + 0.425787
NA pCD1 repeat_region28699 9 + 1
NA pCD1 repeat_region61868 6302 - 0.449064
NA pCD1 rep_origin55956 1195 - 0.50795
NA YPCD1.01 putative transposaseSubName: Full=IS transposase; SubName: Full=ORF 78; SubName: Full=ORF12; SubName: Full=Putative transposase; SubName: Full=Putative transposase, N end of IS100 transframe protein; SubName: Full=Putative transposase-orf1 protein; SubName: Full=Transposase; SubName: Full=Transposase for insertion sequence IS100; pCD1 CDS88 1023 + 0.527859
NA YPCD1.73c hypothetical proteinSubName: Full=Hypothetial protein; SubName: Full=Uncharacterized protein; pCD1 CDS53679 450 - 0.451111
NA YPCD1.04 SubName: Full=YPCD1.04 protein; Flags: Fragment; pCD1 misc_feature2304 648 + 0.546296
NA pCD1 misc_feature45593 361 + 0.468144
NA pCD1 repeat_region54367 333 + 0.498498
NA pCD1 repeat_region68026 39 - 0.487179
NA pCD1 misc_feature11246 158 - 0.531646
NA YPCD1.24c SubName: Full=YPCD1.24c protein; Flags: Fragment; pCD1 misc_feature15628 219 - 0.461187
NA pCD1 misc_feature5046 369 - 0.449865
NA YPCD1.66 pCD1 misc_feature46610 292 - 0.469178
NA pCD1 repeat_region11209 195 + 0.507692
NA pCD1 repeat_region55733 15 - 1
NA YPCD1.74c pCD1 misc_feature54378 316 - 0.5
NA YPCD1.08c hypothetical proteinSubName: Full=ParE toxin protein; SubName: Full=Putative plasmid stabilization element ParE; SubName: Full=Uncharacterized protein; pCD1 CDS4399 300 - 0.38
NA pCD1 repeat_region67452 612 + 0.495098
NA YPCD1.82c pCD1 misc_feature58523 366 - 0.540984
NA YPCD1.68c SubName: Full=O68; SubName: Full=Uncharacterized protein; SubName: Full=YPCD1.68c protein; pCD1 misc_feature48811 207 - 0.608696
NA YPCD1.96c putative transposaseSubName: Full=Putative transposase; pCD1 CDS68947 432 - 0.569444
NA pCD1 repeat_region1956 349 - 0.484241
NA pCD1 repeat_region62808 3065 + 0.502773
NA YPCD1.07 hypothetical proteinSubName: Full=Uncharacterized protein; pCD1 CDS4261 297 + 0.373737
NA YPCD1.78n copA pCD1 misc_RNA57242 90 + 0.466667
NA YPCD1.09n pCD1 misc_feature4973 425 - 0.458824
NA pCD1 repeat_region54366 234 + 0.487179
NA YPCD1.94 putative transposaseSubName: Full=Putative transposase; pCD1 CDS67222 810 + 0.504938
NA YPCD1.89 pCD1 misc_feature62468 351 + 0.512821
NA YPCD1.09c hypothetical protein pCD1 CDS4691 243 - 0.440329
NA YPCD1.14c pCD1 misc_feature9220 509 - 0.550098
NA pCD1 misc_feature1956 44316 + 0.437246
NA pCD1 misc_feature57858 369 - 0.487805
NA pCD1 repeat_region45033 1904 - 0.434874
NA pCD1 repeat_region46606 34 - 0.411765
NA pCD1 repeat_region58954 391 - 0.473146
NA YPCD1.15c hypothetical proteinSubName: Full=Transposase; SubName: Full=Uncharacterized protein; pCD1 CDS9429 459 - 0.551198
NA pCD1 repeat_region54563 137 + 0.518248
NA pCD1 repeat_region66851 40 + 0.45
NA YPCD1.11 pCD1 pseudo5498 132 + 0.469697
NA pCD1 promoter8324 102 - 0.264706
NA YPCD1.25 SubName: Full=YPCD1.25 protein; Flags: Fragment; pCD1 misc_feature15976 318 + 0.440252
NA YPCD1.02n pCD1 misc_feature1956 352 - 0.485795
NA pCD1 repeat_region46081 186 - 0.456989
NA YPCD1.83c pCD1 misc_feature58881 370 - 0.5
NA pCD1 repeat_region49046 612 + 0.495098
NA YPCD1.14n hypothetical protein pCD1 CDS9123 198 - 0.5
NA pCD1 repeat_region9066 1235 - 0.509312
NA pCD1 repeat_region68981 1324 - 0.567976
NA YPCD1.92 hypothetical proteinSubName: Full=Uncharacterized protein; pCD1 CDS66503 330 + 0.281818
NA pCD1 misc_feature58841 11460 + 0.462216
NA YPCD1.97c putative transposaseSubName: Full=Putative transposase; pCD1 CDS69378 927 - 0.558792
NA pCD1 misc_feature60307 189 - 0.386243
NA pCD1 repeat_region52267 8 + 1
NA YPCD1.93 putative transposaseSubName: Full=Putative IS1617 transposase; SubName: Full=Putative transposase; SubName: Full=Transposase; pCD1 CDS66932 267 + 0.479401
NA pCD1 misc_feature1 70305 + 0.448361
NA pCD1 repeat_region62819 3054 - 0.502292
NA pCD1 repeat_region58109 1236 + 0.510518
NA YPCD1.70c SubName: Full=YPCD1.70c protein; Flags: Fragment; pCD1 misc_feature49657 99 - 0.40404
NA SubName: Full=Putative transposase homolog; SubName: Full=YPCD1.89 protein; pCD1 repeat_region62474 381 + 0.509186
NA pCD1 misc_feature18121 777 + 0.42471
NA pCD1 repeat_region58403 137 - 0.49635
NA YPCD1.18c SubName: Full=YPCD1.18c protein; Flags: Fragment; pCD1 misc_feature11260 144 - 0.527778
NA pCD1 repeat_region45496 34 + 0.470588
NA pCD1 repeat_region68981 1321 - 0.568509
NA pCD1 misc_feature46262 188 + 0.441489
NA pCD1 misc_feature68947 1355 - 0.5631
NA pCD1 repeat_region9066 40 + 0.425
NA pCD1 repeat_region25686 8 - 1
NA YPCD1.69 SubName: Full=YPCD1.69 protein; Flags: Fragment; pCD1 misc_feature49044 582 + 0.493127
NA pCD1 repeat_region58108 194 + 0.489691
NA YPCD1.22n pCD1 misc_feature14442 219 - 0.452055
NA YPCD1.03c SubName: Full=YPCD1.03c protein; Flags: Fragment; pCD1 misc_feature1956 249 - 0.497992
NA pCD1 repeat_region5813 270 - 0.511111
NA YPCD1.14c pCD1 misc_feature9101 1107 - 0.522132
NA YPCD1.02 transposase/IS proteinSubName: Full=ATP-binding protein; SubName: Full=ORF 77; SubName: Full=ORF11; SubName: Full=Putative ATP-binding protein; SubName: Full=Putative transposase; SubName: Full=Transposase; pCD1 CDS1110 780 + 0.503846
NA YPCD1.81 SubName: Full=YPCD1.81 protein; Flags: Fragment; pCD1 misc_feature58307 234 + 0.542735
NA YPCD1.10c SubName: Full=YPCD1.10c protein; Flags: Fragment; pCD1 misc_feature5149 249 - 0.429719
NA pCD1 repeat_region58855 395 + 0.493671
NA YPCD1.27 pCD1 pseudo18229 655 + 0.416794
NA YPCD1.80c pCD1 misc_feature58166 486 - 0.512346
NA pCD1 repeat_region1 1956 + 0.514826
NA YPCD1.24n pCD1 misc_feature15838 137 - 0.510949
NA YPCD1.11 pCD1 pseudo5498 132 + 0.469697
NA pCD1 misc_feature2304 679 + 0.544919
NA YPCD1.84c SubName: Full=Putative DNA helicase; SubName: Full=Uncharacterized protein; pCD1 misc_feature59443 492 - 0.554878
NA YPCD1.22c hypothetical proteinSubName: Full=Uncharacterized protein; pCD1 CDS14020 390 - 0.276923
NA YPCD1.85 pCD1 misc_feature59946 362 + 0.502762
NA pCD1 repeat_region59944 395 - 0.496203
NA pCD1 repeat_region10261 40 - 0.425
NA pCD1 repeat_region18602 329 + 0.43769
NA pCD1 repeat_region15574 274 - 0.448905
NA YPCD1.26n pCD1 misc_feature17974 207 - 0.444444
NA YPCD1.91n hypothetical protein pCD1 CDS65900 465 + 0.301075
NA pCD1 repeat_region16786 364 - 0.370879
NA pCD1 repeat_region66851 1214 + 0.499176
NA pCD1 misc_feature46626 60 + 0.516667
NA pCD1 misc_feature46267 24034 + 0.463344
NA YPCD1.27 pCD1 pseudo18229 655 + 0.416794
NA YPCD1.23 hypothetical proteinSubName: Full=Uncharacterized protein; pCD1 CDS14681 420 + 0.388095
NA YPCD1.16c hypothetical proteinSubName: Full=Uncharacterized protein; pCD1 CDS9911 324 - 0.481481
NA pCD1 misc_feature46267 12624 + 0.464195
ORFC YPCD1.65 putative transposaseSubName: Full=Putative transposase; pCD1 CDS46302 309 + 0.459547
copB YPCD1.79c replication proteinSubName: Full=Putative replication transcriptional regulator; SubName: Full=Replication protein; SubName: Full=Replication protein RepB homolog; SubName: Full=Replication protein RepB-like protein; pCD1 CDS57466 255 - 0.423529
lcrE YPCD1.39c secretion control proteinRecName: Full=Outer membrane protein YopN; AltName: Full=LcrE; AltName: Full=Yop4b; pCD1 CDS27107 882 - 0.461451
lcrG YPCD1.32c low calcium response protein GRecName: Full=Low calcium response locus protein G; pCD1 CDS22917 288 - 0.46875
lcrO YPCD1.58 type III secretion apparatus componentRecName: Full=Yop proteins translocation protein I; AltName: Full=Low calcium response locus protein O; pCD1 CDS42133 348 + 0.468391
lcrQ YPCD1.62 LCR negative regulatorRecName: Full=Yop proteins translocation protein M; AltName: Full=Low calcium response locus protein Q; pCD1 CDS44686 348 + 0.479885
lcrR YPCD1.33c low calcium response protein RRecName: Full=Low calcium response locus protein R; pCD1 CDS23246 441 - 0.487528
lcrS YPCD1.63 putative transposaseRecName: Full=Low calcium response locus protein S; pCD1 CDS45581 267 + 0.434457
lcrT YPCD1.64 pCD1 misc_feature45883 389 + 0.452442
lcrV YPCD1.31c secreted effector proteinRecName: Full=Virulence-associated V antigen; AltName: Full=Low calcium response locus protein V; pCD1 CDS21935 981 - 0.377166
repA1 YPCD1.77c replication proteinSubName: Full=Putative replication initiation protein; SubName: Full=Replication protein; SubName: Full=Replication protein RepA-like protein; pCD1 CDS56291 867 - 0.542099
sopA YPCD1.13c sopAB transcription repressorSubName: Full=Chromosome partitioning protein ParA; SubName: Full=Putative plasmid partitioning transcription repressor; SubName: Full=SopAB transcription repressor; pCD1 CDS7157 1167 - 0.441302
sopB YPCD1.12c putative plasmid-partitioning control proteinSubName: Full=Plasmid partitioning control protein; SubName: Full=Putative plasmid partitioning control protein; pCD1 CDS6195 963 - 0.417445
sycD YPCD1.30c secretion chaperoneRecName: Full=Low calcium response locus protein H; pCD1 CDS21416 507 - 0.441815
sycH YPCD1.95c secretion chaperoneSubName: Full=Putative yopH targeting protein; SubName: Full=Putative yopH targeting protein SycH; SubName: Full=YopH chaperone; SubName: Full=YopH chaperone SycH protein homolog; pCD1 CDS68179 426 - 0.41784
sycN YPCD1.37c hypothetical proteinRecName: Full=Chaperone protein SycN; pCD1 CDS26490 372 - 0.526882
sycT YPCD1.21 YopT chaperoneRecName: Full=Chaperone protein SycT; pCD1 CDS13578 399 + 0.411028
tap YPCD1.78c repA translation proteinSubName: Full=Putative repA translation protein; SubName: Full=RepA translation protein; pCD1 CDS57150 75 - 0.44
tnpA YPCD1.90c putative transposaseSubName: Full=Putative transposase; SubName: Full=Transposase (Tn1000) homolog; pCD1 CDS62851 2316 - 0.519862
tnpR YPCD1.91 putative resolvaseSubName: Full=Putative resolvase; SubName: Full=Resolvase; SubName: Full=Transposon gamma-delta resolvase (Transposon TN1000) homolog; pCD1 CDS65330 552 + 0.46558
tyeA YPCD1.38c Yop secretion and targeting control proteinRecName: Full=Protein TyeA; pCD1 CDS26848 279 - 0.433692
virF YPCD1.49 transcriptional regulatorRecName: Full=Thermoregulatory protein LcrF; pCD1 CDS36112 816 + 0.416667
virG YPCD1.48 needle complex outer membrane lipoprotein precursorSubName: Full=Pre-lipoprotein VirG homolog; SubName: Full=Putative Yop targeting lipoprotein; SubName: Full=Putative Yop targeting lipoprotein VirG; SubName: Full=YscC lipoprotein chaperone; pCD1 CDS35593 396 + 0.444444
yadA' YPCD1.87c pCD1 pseudo60565 1304 - 0.431748
yerA YPCD1.05c secretion chaperoneRecName: Full=YopE regulator; pCD1 CDS3014 393 - 0.409669
ylpA YPCD1.17c pCD1 pseudo10338 709 - 0.488011
ylpA YPCD1.17c pCD1 pseudo10338 709 - 0.488011
ylpB YPCD1.59 needle complex inner membrane lipoproteinRecName: Full=Yop proteins translocation lipoprotein J; AltName: Full=Lipoprotein YlpB; AltName: Full=Low calcium response locus protein KA; Flags: Precursor; pCD1 CDS42487 735 + 0.428571
yopB YPCD1.29c secreted effector proteinSubName: Full=Putative Yop targeting protein; SubName: Full=Putative Yop targeting protein YopB; SubName: Full=Type III secretion host injection protein; SubName: Full=Yop targeting protein; SubName: Full=YopB homolog; pCD1 CDS20233 1206 - 0.466833
yopD YPCD1.28c secreted effector proteinSubName: Full=Putative Yop negative regulation/targeting component; SubName: Full=Putative Yop negative regulation/targeting component YopD; SubName: Full=Type III secretion host injection and negative regulator protein; SubName: Full=Yop targeting negative regulator; SubName: Full=YopD homolog; pCD1 CDS19294 921 - 0.431053
yopE YPCD1.06 putative outer membrane virulence proteinRecName: Full=Outer membrane virulence protein YopE; pCD1 CDS3600 660 + 0.510606
yopH YPCD1.67c putative secreted protein-tyrosine phosphataseSubName: Full=Targeted effector protein; SubName: Full=Type III secretion injected virulence protein; SubName: Full=Uncharacterized protein; SubName: Full=YopH; pCD1 CDS47122 1407 - 0.474058
yopJ YPCD1.71c targeted effector proteinSubName: Full=Putative targeted effector protein; pCD1 CDS50211 867 - 0.344867
yopM YPCD1.26c secreted effector proteinRecName: Full=Outer membrane protein YopM; pCD1 CDS16336 1230 - 0.389431
yopQ YPCD1.19c Yop targeting proteinSubName: Full=Putative virulence determinant protein; SubName: Full=Type III secretion negative modulator of injection; SubName: Full=Yop targeting protein; SubName: Full=YopK (YopQ) homolog; pCD1 CDS11562 549 - 0.335155
yopR YPCD1.57 secreted proteinRecName: Full=Yop proteins translocation protein H; AltName: Full=Low calcium response locus protein P; pCD1 CDS41635 498 + 0.429719
yopT YPCD1.20 Yop targeted effectorRecName: Full=Cysteine protease YopT; EC=3.4.22.-; pCD1 CDS12610 969 + 0.431373
ypkA YPCD1.72c secreted protein kinaseRecName: Full=Protein kinase YpkA; Short=Protein kinase A; EC=2.7.11.1; AltName: Full=Targeted effector protein kinase; Flags: Precursor; pCD1 CDS51473 2199 - 0.481583
yscA YPCD1.50 hypothetical proteinRecName: Full=Yop proteins translocation protein A; pCD1 CDS37006 99 + 0.313131
yscB YPCD1.51 type III secretion apparatus componentRecName: Full=Chaperone protein YscB; AltName: Full=Yop proteins translocation protein B; pCD1 CDS37330 414 + 0.417874
yscC YPCD1.52 outer membrane secretin precursorSubName: Full=KIM5; SubName: Full=Putative type III secretion protein; SubName: Full=Putative type III secretion protein YscC; SubName: Full=Type III secretion outermembrane pore forming protein; SubName: Full=Type III secretion protein; SubName: Full=Yop proteins translocation protein C homolog; pCD1 CDS37749 1824 + 0.454496
yscD YPCD1.53 virulence proteinSubName: Full=Putative type III secretion protein; SubName: Full=Putative type III secretion protein YscD; SubName: Full=Type III secretion protein; SubName: Full=Yop proteins translocation protein D homolog; pCD1 CDS39569 1260 + 0.46746
yscE YPCD1.54 type III secretion apparatus componentSubName: Full=Putative type III secretion protein; SubName: Full=Putative type III secretion protein YscE; SubName: Full=Type III secretion protein; SubName: Full=Yop proteins translocation protein E homolog; pCD1 CDS40825 201 + 0.422886
yscF YPCD1.55 needle complex major subunitSubName: Full=Putative type III secretion protein; SubName: Full=Putative type III secretion protein YscF; SubName: Full=Type III secretion cytoplasmic protein; SubName: Full=Type III secretion protein; SubName: Full=Yop proteins translocation protein F homolog; pCD1 CDS41026 264 + 0.416667
yscG YPCD1.56 type III secretion apparatus componentSubName: Full=Putative type III secretion protein; SubName: Full=Putative type III secretion protein YscG; SubName: Full=Type III secretion protein; SubName: Full=Type III secretion spans bacterial envelope protein; SubName: Full=Yop proteins translocation protein G homolog; pCD1 CDS41291 348 + 0.439655
yscK YPCD1.60 type III secretion apparatus componentRecName: Full=Yop proteins translocation protein K; AltName: Full=Low calcium response locus protein KB; pCD1 CDS43221 630 + 0.485714
yscL YPCD1.61 type III secretion proteinRecName: Full=Yop proteins translocation protein L; AltName: Full=Low calcium response locus protein KC; pCD1 CDS43796 666 + 0.448949
yscN YPCD1.40 type III secretion system ATPaseSubName: Full=Putative Yops secretion ATP synthase; SubName: Full=Putative Yops secretion ATP synthase YscN; SubName: Full=Yops secretion ATPase YscN homolog; SubName: Full=Yops secretion protein; pCD1 CDS28186 1320 + 0.508333
yscO YPCD1.41 type III secretion apparatus componentSubName: Full=Putative type III secretion protein; SubName: Full=Putative type III secretion protein YscO; SubName: Full=Type III secretion protein; SubName: Full=Type III secretion spans bacterial envelope protein; SubName: Full=Yop proteins translocation protein O; SubName: Full=YscO; pCD1 CDS29502 465 + 0.458065
yscP YPCD1.42 type III secretion apparatus componentRecName: Full=Yop proteins translocation protein P; pCD1 CDS29966 1368 + 0.486842
yscQ YPCD1.43 type III secretion proteinRecName: Full=Yop proteins translocation protein Q; pCD1 CDS31330 924 + 0.481602
yscR YPCD1.44 needle complex export proteinRecName: Full=Yop proteins translocation protein R; pCD1 CDS32250 654 + 0.43578
yscS YPCD1.45 needle complex export proteinRecName: Full=Yop proteins translocation protein S; pCD1 CDS32905 267 + 0.453184
yscT YPCD1.46 needle complex export proteinRecName: Full=Yop proteins translocation protein T; pCD1 CDS33168 786 + 0.428753
yscU YPCD1.47 needle complex export proteinRecName: Full=Yop proteins translocation protein U; pCD1 CDS33953 1065 + 0.431925
yscV YPCD1.34c low calcium response protein DRecName: Full=Low calcium response locus protein D; pCD1 CDS23683 2115 - 0.463357
yscX YPCD1.36c hypothetical proteinRecName: Full=Yop proteins translocation protein X; pCD1 CDS26125 369 - 0.495935
yscY YPCD1.35c hypothetical proteinRecName: Full=Chaperone protein YscY; AltName: Full=Yop proteins translocation protein Y; pCD1 CDS25784 345 - 0.46087