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# Yersinia pestis Antiqua, Antiqua

>YPA_CD0042 cytotoxic effector protein
MNSIHGHYHIQLSNYSAGENLQSATLTEGVIGAHRVKVETALSHSNLQKK
LSATIKHNQSGRSMLDRKLTSDGKANQRSSFTFSMIMYRMIHFVLSTRVP
AVRESVANYGGNINFKFAQTKGAFLHKIIKHSDTASGVCEALCAHWIRSH
AQGQSLFDQLYVGGRKGKFQIDTLYSIKQLQIDGCKADVDQDEVTLDWFK
KNGISERMIERHCLLRPVDVTGTTESEGLDQLLNAILDTHGIGYGYKKIH
LSGQMSAHAIAAYVNEKSGVTFFDPNFGEFHFSDKEKFRKWFTNSFWGNS
MYHYPLGVGQRFRVLTFDSKEV
>YPA_CD0057 transposase
MMQSRTVYNYRSHRDDRAITQRIREIAETRIRYGCPRIHILLRREGWLVN
HKKTHRIYCLEGLNLRSKRPRRHVTAKHRHARPEVTALEQCWSMDFVADN
LFNGRRVRALTIVDNFSRECLAIEVGQGLRGDDVVAVMDRLKHSLGRIPQ
RLQTDNGSEFISKSMDRWAYENRVTMDCSRPGKPTDNAFIESFNGSLRDE
CLNVHGFLSLEDAQEKIEQWRQEYNHFHPHSSLNNLTPAEFARSHQKGPD
L
>YPA_CD0063 hypothetical protein
MRKWIRQYKEEVSGVTPDNPALTPEQREIQSLRAQIKRLEMEKEILKQAA
VLMSEFPIKSLR
>YPA_CD0014 thermoregulatory protein
MASLEIIKLEWVTPIFKVVEHSQDGLYILLQGQISWQSSGQTYDLDEGNM
LFLRRGSYAVRCGTKEPCQLLWIPLPGSFLSTFLHRFGSLLSEIGRDNST
PKPLLIFNISPILSQSIQNLCAILERSDFPSVLTQLRIEELLLLLAFSSQ
GTLFLSALRHLGNRPEERLQKFMEENYLQGWKLSKFAREFGMGLTTFKEL
FGTVYGISPRAWISERRILYAHQLLLNGKMSIVDIAMEAGFSSQSYFTQS
YRRRFGCTPSQARLTKIATTG
>YPA_CD0080 transposase ORFA
MKKARFTETQILRVLKEVEGGRHVKDVCRENGGSEASYYNWKSKYGGMES
SDIKRMKEREEENRRLKQMYASLCQRRMKSDPLISPPTAQY
>YPA_CD0031 yopB/yopD chaperone
MQQETTDTQEYQLAMESFLKGGGTIAMLNEISSDTLEQLYSLAFNQYQSG
KYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAIMD
IKEPRFPFHAAECLLQKGELAEAESGLFLAQELIADKTEFKELSTRVSSM
LEAIKLKKEMEHECVDNP
>YPA_CD0074 hypothetical protein
MAVGRKNWLFAGSLRAGQRMASILSLLETAKLNGHDPYVWLRDVLTRLPT
WPNSQLNALLPYAENRFS
>YPA_CD0021 type III secretion protein
MIRRLHRVKVLRVERAEKAIKTQQACLQAAHRRHQEAVQTSQDYHLWRID
EEQRLFDQRKNTTLNCKDLEKWQRQIASLREKEANYELECAKLLERLANE
RERLTLCQKMLQQARHKENKFLELVRREDEDELNQQHYQEEQEQEEFLQH
HRNA
>YPA_CD0070 transposase remnant
MKRLLFHSDQGGQYRSKKSRQLLWRTGVMQSMSRRGNCLDNSPMERVFRS
LKSEWLPVGGYMDVHHAVRDIGEWIQSYYNTPPSAQWWITAL
>YPA_CD0036 hypothetical protein
MNSLSFHDNSIFCNKPKYSDAEVAQTLDTAQKHTLTVSKGVLDTAKQYTN
TVSSNTLDSANTYTNNKAD
>YPA_CD0038 protein 25
MVLQSWRKKWANLSCYFRYPTTIRKVIYMTNAIESVHRLFRKLTKTKGIF
PNENSLLKSLYLGLMNAQERWTMPIQSWNLALSQLAIYFEGRLDKVITL
>YPA_CD0058 transposase
MKKTRYTEEQIAFALKQAETGTRVEEVCRKMGISEATFYNWKKKFGGMGV
TELRRLRQLEDENQRLKRLVADLSLDKEMLQDVIRKKF
>YPA_CD0004 type III secretion protein
MQPFVQIIPSNLSLACGLRILRAEDYQSSLTTEELISAAKQDAEKILADA
QEVYEQQKQLGWQAGMDEARTLQATLIHETQLQCQQFYRHVEQQMSEVVL
LAVRKILNDYDQVAMTLQVVREALALVSNQKQVVVRVNPDQAGAIREQIA
KVHKDFPEISYLEVTADARLDQGGCILETEVGIIDASIDGQIEALSRAIS
TTLGQMKVTE
>YPA_CD0050 hypothetical protein
MAHVTSVTLGEHLTGFVGEMIQSGRYGNISEVLRDALRLMEAREQRVQHV
RDMVLAGTNVPVSHRLMDEIFSAAVKDTSV
>YPA_CD0044 conjugative transfer surface exclusion protein
MSETIWLEPSSQKTVYLQIKNISDKNMLGLAPQITKAVQDKGYTVTSSPE
DAHYWIQANVLKADKMDLREAEGFLSQGYQGAALGAALGAGITGYNSNSA
GATLGIGLAAGLVGMAANAMVEDINYTMVTDVQISEKTDTTLQTDNVAAL
KQGTSGYKVQTSTQTGNKHQYQTRVVSSANKVNLKFEEARPVLEDQLAKS
IANIL
>YPA_CD0062 hypothetical protein
MATGVDSVAIGPLSKALGDSAVTYGVSSTAQKDGVAIGAKASASDTGVAV
GFNSKVDAQNSVAIGHSSHVAADHGYSIAIGDHSKTDRENSVSIGHESLN
RQLTHLAAGTEDTDAVNVAQLKKEMAETLENARKETLAQSNDVLDAAKKH
SNSVARTTLETAEEHANKKSAETLVSAKVYADSNSSQTLKTANSYTDVTV
SNSTKKATRESNQYTDHKFSQLDNRLDKLDKRVDKGLASSAALNSLFQPY
GVGKVNFTAGVGGYRSSQALAIGSGYRVNESVAFKAGVAYAGSSNVMYNA
SFNIEW
>YPA_CD0064 hypothetical protein
MGGMAAHWFTYQYAVPFCGRAKTLVTLSNAEGESVLISPQQNTAQDISLF
MPRELTVSQGDRVRFTRSDTDRGYVANSLWEVAGFTEDGAVRFRQGDQEK
IVDPQKATEDRHIDLAYTLTAYGVQGASERFVIALFGAEGGRKRMATLHL
FT
>YPA_CD0019 type III secretion protein
MSLLTLPQAKLSELSLRQRLSHYQQNYLWEEGKLELTVSEPPSSLNCILQ
LQWKGTHFTLYCFGNDLANWLTADLLGAPFFTLPKELQLALLERQTVFLP
KLVCNDIATASLSVTQPLLSLRLSRDNAHISFWLTSAEALFALLPARPNS
ERIPLPILISLRWHKVYLTLDEVDSLRLGDVLLAPEGSGPNSPVLAYVGE
NPWGYFQLQSNKLEFIGMSHESDELNPEPLTDLNQLPVQVSFEVGRQILD
WHTLTSLEPGSLIDLTTPVDGEVRLLANGRLLGHGRLVEIQGRLGVRIER
LTEVTIS
>YPA_CD0011 type III secretion protein
MSWVCRFYQGKHRGVEVELPHGRCVFGSDPLQSDIVLSDSEIAPVHLVLM
VDEEGIRLTDSAEPLLQEGLPVPLGTLLRAGSCLEVGFLLWTFVAVGQPL
PETLQVPTQRKEPTDRLPRSRLGIGLGVLSLLLLLTFLGLLGHGLWREYN
QDGQLVEQEVRRLLATAAYKDVVLTSPKKEGEPWLLTGYIQDNHARLSLQ
NFLESHGIPFRLELRSMEELRQGAEFILQRLGYHGIEVSLAPQAGWLQLN
GEVSEEIQKQKIDSLLQAEVPGLLGVESKVRIAGNQRKRLDALLEQFGLD
SDFTVNVKGELIELRGQVNDEKLNSFNQLQQTFRQEFGNRPKLELVNVGG
QPQHDELNFEVQAISLGKVPYVVLDNHQRYPEGAILNNGVRILAIRRDAV
IVSKGKREFVIQLNGGKPR
>YPA_CD0016 type III secretion protein
MIADLIQRPLLTYTLLLPRFMACFVILPVLSKQLLGGVLLRNGIVCSLAL
YVYPAVANQPYIEVDAFTLMLLIGKEIILGLLIGFVATIPFWALESAGFI
VDNQRGAAMASLLNPGLDSQTSPTGLLLTQTLITIFFSGGAFLSLLSALF
HSYVNWPVASFFPAVSEQWVDFFYNQFSQILLIAAVLAAPLLIAMFLAEF
GLALISRFAPSLNVFVLAMPIKSAIASLLLVIYCMQMMSHASKAMLLVMD
PISLLIPVLEK
>YPA_CD0054 transposase
MLSREDFYMIKQMRQQGAYIIDIATQVGCSERTVRRYLKYPEPPARKTRH
KMVKLKPFMDYIDMRLAENVWNSEVILAEIKAMGYTGGRSMLRYYIQPKR
KMRPSKRTVRVETQPGYQLQHDWGEVELEVAGQRCKVNFAVNTLGFSRRF
HVFAAPKQDAEHTYESLVRAFRYFGGSVKTVLVDNQKAAVLKNNNGKVVF
NSGFLLLAEHYDFLPRACRPRRARTKGKVERMVKYLKDNVFVRYRRFDSF
THVNQQLEQWMADVADKRELRQFRQTPEQRFALEQEHLQPLPDTDFDTSY
FDIRHVSWDSYIEVGGNRYSVPEALCGQPVSIRISLDDELRSYSNEQQVA
SHRLCSASSGWQTVPEHHAPLWQQVSMVEHRPLSAYEELL
>YPA_CD0056 yopH targeting protein
MRTYSSLLEEFATELGLEEIETNELGHGAVTIDKIWVVHLAPINEKELVA
FMRAGILTGQSQLYDILRKNLFSPLSGVIRCALDKDDHWLLWSQLNINDT
SGTQLASVLTSLVDKAVTLSCEPTMKKEEDDHRPSSSHLLV
>YPA_CD0046 hypothetical protein
MVELCRLLKITRSVYSASLNFRVDVKRLQLRELHQQSRGAAGSRTLSLLM
RQSGYNVVRWLARRLMRECGLASRQPGKPRYRGEREVSLASPDLLKRQFK
PSEPNRVWSGYISYIKVNGGWCYLALVIDLYSRRIVGSAISSSPDAELVC
RA
>YPA_CD0022 Yop secretion ATP synthase
MLSLDQIPHHIRHGIVGSRLIQIRGRVTQVTGTLLKAVVPGVRIGELCYL
RNPDNSLSLQAEVIGFAQHQALLIPLGEMYGISSNTEVSPTGTMHQVGVG
EHLLGQVLDGLGQPFDGGHLPEPAAWYPVYQDAPAPMSRKLITTPLSLGI
RVIDGLLTCGEGQRMGIFAAAGGGKSTLLASLIRSAEVDVTVLALIGERG
REVREFIESDLGEEGLRKAVLVVATSDRPSMERAKAGFVATSIAEYFRDQ
GKRVLLLMDSVTRFARAQREIGLAAGEPPTRRGYPPSVFAALPRLMERAG
QSSKGSITALYTVLVEGDDMTEPVADETRSILDGHIILSRKLAAANHYPA
IDVLRSASRVMNQIVSKEHKTWAGDLRRLLAKYEEVELLLQIGEYQKGQD
KEADQAIERMGAIRGWLCQGTHELSHFNETLNLLETLTQ
>YPA_CD0047 transposase remnant
MQSMSRRGNCLDNSPMERVFRSLKSEWLLVGGYMDVHHAVRDIGEWIQSY
YNTPPSAQWWITAL
>YPA_CD0013 hypothetical protein
MQNLLKNLAASLGRKPFVADKQGVYRLTIDKHLVMLAPHGSELVLRTPID
APMLREGNNVNVTLLRSLMQQALAWAKRYPQTLVLDDCGQLVLEARLRLQ
ELDTHGLQEVINKQLALLEHLIPQLTPFSVASRVGWN
>YPA_CD0065 hypothetical protein
MTQPKQTKRRFSPEFKLEAIEQVVKYQRSTIEVARALELDPSQLRKWIRQ
YKEEVSGVTPDNPALTPEQREIQSLRAQIKRLEMEKEILKQAAVLMSEFP
IKSLR
>YPA_CD0066 hypothetical protein
MVELCRLLKITRSVYSASLNFRVDVKRLQLRELHQQSRGAAGSRTLSLLM
RQSGYNVVRWLARRLMRECGLASRQPGKPRYRGEREVSLASPDLLKRQFK
PSEPNRVWSGYISYIKVNGGWCYLALVIDLYSFHW
>YPA_CD0078 transposase
MGISRSLLHYCPNTARDIPVVEVLQKLAHQYPAYGFGLMFNKLRQSGLPW
NVKRVYRVYRLLKLNFRRKGKKRLPNRHPQPLAIPLKMNHCWSVDFMSDA
LTDGRRFRLFNVVEILTGKHWQLKLT
>YPA_CD0073 hypothetical protein
MTLRTTSSCGLRPPDGCSFPCDYLEGLNLRSKRPRRHVTTRHRHARPEVT
ALDQCWSMDFVADNLFNGHRVRALTIVDNFSRECLALEVGQGLRGDDVVA
VMDRLKHSLGRIPQRLQTDNGSEFISKSMDRWAYENRVTMDCSRPGKPTD
NAFIESFNGSLRDECLNVHGFLSLEDAQEKIEQWRQEYNHFRPHSSLNNL
TPAEFARSHQKGPDL
>YPA_CD0086 hypothetical protein
MGNYMVSDEINRRNNLSDICYGHPIYVGCACINPNYINPQIQRSRVNTAR
YFEQAAQFDHWPFCFQPC
>YPA_CD0055 transposase
MHELEALLSRLKMEHLSYHVESLLEQAAKKELNYREFLCMALQQEWNGRH
QRGMESRLKQARLPWVKTLEQFDFTFQPGIDRKVVRELAGLAFVERCENV
ILLGPPGVGKPIWPLLSA
>YPA_CD0025 type III secretion protein
MSWIEPIISHFCQDLGVPTSSPLSPLIQLEMAQSGTLQLEQHGATLTLWL
ARSLAWHRCEDAMVKALTLTAAQKSGALPLRAGWLGESQLVLFVSLDERS
LTLPLLHQAFEQLLRLQQEVLAP
>YPA_CD0082 hypothetical protein
MAPGDFKWEHFAPDELCQCQRYAVRAWDFRLSLYHLPLVY
>YPA_CD0010 type III secretion protein
MSNFSGFTKGTDIADLDAVAQTLKKPADDANKAVNDSIAALKDKPDNPAL
LADLQHSINKWSVIYNINSTIVRSMKDLMQGILQKFP
>YPA_CD0089 hypothetical protein
MQNAQIRLLDIIAYERVVFSEIQLLNNCAK
>YPA_CD0008 type III secretion protein
MTVTLNRGSITSLMSSSQAVSTLQPVASELKTQLENKLKSESAEKTREVL
WQQYYASNPPDHAVLEVLATPVREALLARFGQHQGSVVPAIDLPELRSVL
QQFDSFGKRWEAILLQVLEGIKPNESQVGLPYLSELINKELMILLPSNSI
VDSLLHNSHQIDMDT
>YPA_CD0002 ATP-binding protein
MMELQHQRLMALAGQLQLESLISAAPALSQQAVDQEWSYMDFLEHLLHEE
KLARHQRKQAMYTRMAAFPAVKTFEEYDFTFATGAPQKQLQSLRSLSFIE
RNENIVLLGPSGVGKTHLAIAMGYEAVRAGIKVRFTTAADLLLQLSTAQR
QGRYKTTLQRGVMAPRLLIIDEIGYLPFSQEEAKLFFQVIAKRYEKSAMI
LTSNLPFGQWDQTFAGDAALTSAMLDRILHHSHVVQIKGESYRLRQKRKA
GVIAEANPE
>YPA_CD0032 Yop targeting protein
MSALITHDRSTPVTGSLLPYVETPAPAPLQTQQVAGELKDKNGGVSSQGV
QLPAPLAVVASQVTEGQQQEVTKLLESVTRGAAGSQLISNYVSVLTKFTL
ASPDTFEIELGKLVSNLEEVRKDIKIADIQRLHEQNMKKIEENQEKIKET
EENAKQVKKSGIASKIFGWLSAIASVIVGAIMVASGVGAVAGAMMVASGV
IGMANMAVKQAAEDGLISQEAMKILGPILTAIEVALTVVSTVMTFGGSAL
KCLANIGAKLGANTASLVAKGAEFSAKVAQISTGISNTVGSAVTKLGGSF
AGLTMSHAIRTGSQATQVAVGVGSGITQTINNKKQADLQHNNADLALNKA
DMAALQSIIDRLKEELSHLSESHQQVMELIFQMINAKGDMLHNLAGRPHT
V
>YPA_CD0075 protein-tyrosine phosphatase Yop effector
MNLSLSDLHRQVSRLVQQESGDCTGKLRGNVAANKETTFQGLTIASGARE
SEKVFAQTVLSHVANVVLTQEDTAKLLQSTVKHNLNNYDLRSVGNGNSVL
VSLRSDQMTLQDAKVLLEAALRQESGARGHVSSHSHSALHAPGTPVREGL
RSHLDPRTPPLPPRERPHTSGHHGAGEARATAPSTVSPYGPEARAELSSR
LTTLRNTLAPATNDPRYLQACGGEKLNRFRDIQCCRQTAVRADLNANYIQ
VGNTRTIACQYPLQSQLESHFRMLAENRTPVLAVLASSSEIANQRFGMPD
YFRQSGTYGSITVESKMTQQVGLGDGIMADMYTLTIREAGQKTISVPVVH
VGNWPDQTAVSSEVTKALASLVDQTAETKRNMYESKGSSAVGDDSKLRPV
IHCRAGVGRTAQLIGAMCMNDSRNSQLSVEDMVSQMRVQRNGIMVQKDEQ
LDVLIKLAEGQGRPLLNS
>YPA_CD0051 outer membrane virulence protein
MKISSFISTSLPLPTSVSGSSSVGEMSGRSVSQQTSDQYANNLAGRTESP
QGSSLASRIIERLSSVAHSVIGFIQRMFSEGSHKPVVTPAPTPAQMPSPT
SFSDSIKQLAAETLPKYMQQLNSLDAEMLQKNHDQFATGSGPLRGSITQC
QGLMQFCGGELQAEASAILNTPVCGIPFSQWGTIGGAASAYVASGVDLTQ
AANEIKGLAQQMQKLLSLM
>YPA_CD0026 type III secretion protein
MSRIITAPHIGIEKLSAISLEELSCGLPERYALPPDGHPVEPHLERLYPT
AQSKRSLWDFASPGYTFHGLHRAQDYRRELDTLQSLLTTSQSSELQAAAA
LLKCQQDDDRLLQIILNLLHKV
>YPA_CD0023 membrane-bound Yop targeting protein
MTTLHNLSYGNTPLHNERPEIASSQIVNQTLGQFRGESVQIVSGTLQSIA
DMAEEVTFVFSERKELSLDKRKLSDSQARVSDVEEQVNQYLSKVPELEQK
QNVSELLSLLSNSPNISLSQLKAYLEGKSEEPSEQFKMLCGLRDALKGRP
ELAHLSHLVEQALVSMAEEQGETIVLGARITPEAYRESQSGVNPLQPLRD
TYRDAVMGYQGIYAIWSDLQKRFPNGDIDSVILFLQKALSADLQSQQSGS
GREKLGIVISDLQKLKEFGSVSDQVKGFWQFFSEGKTNGVRPF
>YPA_CD0017 type III secretion protein
MSQGDIIHFTSQALWLVLVLSMPPVLVAAVVGTLVSLVQALTQIQEQTLG
FVIKLIAVVVTLFATASWLGNELHSFAEMTMMKIQGIR
>YPA_CD0001 transposase
MVTFETVMEIKILHKQGMSSRAIARELGISRNTVKRYLQAKSEPPKYTPR
PAVASLLDEYRDYIRQRIADAHPYKIPATVIAREIRDQGYRGGMTILRAF
IRSLSVPQEQEPAVRFETEPGRQMQVDWGTMRNGRSPLHVFVAVLGYSRM
LYIEFTDNMRYDTLETCHRNAFRFFGGVPREVLYDNMKTVVLQRDAYQTG
QHRFHPSLWQFGKEMGFSPRLCRPFRAQTKGKVERMVQYTRNSFYIPLMT
RLRPMGITVDVETANRHGLRWLHDVANQRKHETIQARPCDRWLEEQQSML
ALPPEKKEYDVHLDENLVNFDKHPLHHPLSIYDSFCRGVA
>YPA_CD0072 targeted effector protein
MIGPISQINISGGLSEKETSSLISNEELKNIITQLETDISDGSWFHKNYS
RMDVEVMPALVIQANNKYPEMNLNLVTSPLDLSIEIKNVIENGVRSSRFI
INMGEGGIHFSVIDYKHINGKTSLILFEPANFNSMGPAMLAIRTKTAIER
YQLPDCHFSMVEMDIQRSSSECGIFSFALAKKLYIERDSLLKIHEDNIKG
ILSDGKNPLPHDKLDPYLPVTFYKHTQGKKRLNEYLNTNPQGVGTVVNKK
NETIVNRFDNNKSIVDGKELSVSVHKKRIAEYKTLLKV
>YPA_CD0049 plasmid partitioning control protein
MMKRSPVLRNAPSINFDDAKPAISNAEPSVSAPAVSQLASRVSGMKGNTI
VLPVCGRNVAFTLKVIAAPDVESKTIVFSGNERNQALLSETSLDDLIPSF
LTSGQQIPAFAREHNGNIEVADGSRRRKAAILTGSDYKVLVGNLNDEQML
WLSQIANEYRPTSAYERGLRYAQRLISEFEGNISKLAEAEHLSRKIIQRC
IKTAGLPLKTIQLFANPNELSARSGEALSKAYENNVDTLKRVTHKIMKQK
QEGRQFTTEELIVLLMPERKQPENIHKKSFGKNIEAKYSKDNVSFYLKSV
PESLVKQIEELLNTYAKEHSL
>YPA_CD0040 hypothetical protein
MRRLNKGQFDIWLRRDEPKYRVREGSTFMNRLFNIEVVLA
>YPA_CD0077 transposase
MNIPVHRVVRILERLSTERGYPAFIRSDNGPEFIAAALVEWAEHHGVILD
MYLFRSLSEVRTLTEDWRTEYNEERPHSSLGNMPPVIYARQKLDGDPHWR
WY
>YPA_CD0088 hypothetical protein
MINTTFTELLPKIASHFGLDKLSQDEYGLCELILNDRVVIMLRADEILNR
LTLLGPILGFSGPEARSAASQLFFCYSINALNKDGPCFAWSEELGLIAFK
HLSLDELNVENVSKEIANFYDWLSLVSLPAETQQELPLHTQSTQSVKWG
>YPA_CD0052 yopE chaperone
MYSFEQAITQLFQQLSLSIPDTIEPVIGVKVGEFACHITEHPVGQILMFT
LPSLDNNDEKETLLSHNIFSQDILKPILSWDEVGGHPVLWNRQPLNSLDN
NSLYTQLEMLVQGAERLQTSSLISPPRSFS
>YPA_CD0053 hypothetical protein
MYRLYHLSGLGVKRRRRRKGLATERLPLLRPAAPNLTWSMDFVMDALATG
RRIKCLTCVDDYTKECLTVTVAFGISGVQVTRILDSIALFRGYPATIRTD
QGPEFTCRALDQWVFEHGVELRLIQPGKPTQNGFIESFNGRFRDECLNEH
WFSDVSHARKTISEWRQDYNECRPHSTLNYQTPSEFAAAWRKGNSDSEGS
DITK
>YPA_CD0029 low calcium response locus protein R
MMADPLIPWLTEHGLVCHPHTLSGTPISLGSAFQLAGLKLAWRVEIEQRR
VWIVLIQRVEQRRGLKNPFAALYMLANAARAVLGPDYYLYGNVDVLAGSS
LSTQRLAHFYRRWTGAKELSTGWFSLKVSQVITLSNMKKRQNNGFA
>YPA_CD0039 hypothetical protein
MVNAAGDFKRPNRAWSTLQGFETLRRLNKGQFDIWLRRDEPEYRVREGST
FMNRLFNIEVVLA
>YPA_CD0035 transposase
MKRYQFTDADSSWQLDEIYIRVNGKWFYLYRAINKHGTTLDFYFSPKRNK
NTAYPFIKRVLKPYSVERQPKILNTDKHSSYGYAITRLMKEGKDTGCCKA
AASQIPE
>YPA_CD0048 plasmid partitioning transcription repressor
MFYYKDANFIEIIHMDLKSTLDRCIERGQFMTQEIAKSQFGNDSPAARTI
TRRWRITEAAELVGVTPQTIRNYEDSGKLPPPDTAMIGRVEQRTGYSIQQ
INDMRDVFKTRLSKPKGENPVVLAIAAHKGGAYKTSTSVHIAQWMALQGL
RVLLIDATDPQATASLYHGYVPDLHIHEEDTLLPYYLGQRDDAAYAIKPT
CWPNLEVIPSCLAVHRIESEIYGLHDQGKLPVAPHLLLRAAIESVWDSYD
VVVLDSAPNLGIGTINVVCAADVIVVPTPAELYDYVSTLQFFTMLRDLMS
NIDLNGFEPDVRVLITKFSNAIGSQSQWMDDQIRNAWGGMVLKEVVRVTD
EVGKGQVRMRTVFEQAANQRSTPAAWRNAVSIWEPVCAEIFNRLVKPRWE
NA
>YPA_CD0083 hypothetical protein
MPKSLNAAKWVSIARIMAEGTAYEVEPDLCFTALGTV
>YPA_CD0060 hypothetical protein
MVERYPRDGFFKVFQILRRWGYVWNHKRVHRIYCLLKLNIRRKGKQRLPA
RTPSPLAVPERLNLSGAVDFMHDALICVDDYNREKLAIEIDLNLPTQHVI
RVLDRIVVNRGYPVMGFEVQWDENVR
>YPA_CD0059 resolvase
MRLFGYARVSTSQQSLDIQIKTLKDAGVKANRIFTDKASGSSADREGLDL
LRMKVEEGDVILVKKLDRLGRDTVDMIQLIKEFDAQGVSIQFIDDGISTD
GEMGKMVVTILSAVAQAERQRILERTNEGREEAKLKGVKFGRKRRINRKE
LLELHEQGMGATEIAKKMNIARSTIYKVINESQ
>YPA_CD0018 Yop secretion membrane protein
MIQLPDEINLIIVLSLLTLLPLISVMATSFVKFAVVFSLLRNALGVQQIP
PNMAMYGLAIILSLYVMAPVGFATQDYLQANEVSLTNIESVEKFFDEGLA
PYRMFLKQHIQAQEYSFFVDSTKQLWPKQYADRLESDSLFILLPAFTVSE
LTRAFEIGFLIYLPFIVIDLVISNILLAMGMMMVSPMTISLPFKLLLFVL
LDGWTRLTHGLVISYGG
>YPA_CD0027 type III secretion protein
MNITLTKRQQEFLLLNGWLQLQCGHAERACILLDALLTLNPEHLAGRRCR
LVALLNNNQGERAEKEAQWLISHDPLQAGNWLCLSRAQQLNGDLDKARHA
YQHYLELKDHNESP
>YPA_CD0028 membrane-bound Yop protein
MNPHDLEWLNRIGERKDIMLAVLLLAVVFMMVLPLPPLVLDILIAVNMTI
SVVLLMIAIYINSPLQFSAFPAVLLVTTLFRLALSVSTTRMILLQADAGQ
IVYTFGNFVVGGNLIVGIVIFLIITIVQFLVITKGSERVAEVSARFSLDA
MPGKQMSIDGDMRAGVIDVNEARERRATIEKESQMFGSMDGAMKFVKGDA
IAGLIIIFVNILGGVTIGVTQKGLAAAEALQLYSILTVGDGMVSQVPALL
IAITAGIIVTRVSSEDSSDLGSDIGKQVVAQPKAMLIGGVLLLLFGLIPG
FPTVTFLILALLVGCGGYMLSRKQSRNDEANQDLQSILTSGSGAPAARTK
AKTSGANKGRLGEQEAFAMTVPLLIDVDSSQQEALEAIALNDELVRVRRA
LYLDLGVPFPGIHLRFNEGMGEGEYIISLQEVPVARGELKAGYLLVRESV
SQLELLGIPYEKGEHLLPDQEAFWVSVEYEERLEKSQLEFFSHSQVLTWH
LSHVLREYAEDFIGIQETRYLLEQMEGGYGELIKEVQRIVPLQRMTEILQ
RLVGEDISIRNMRSILEAMVEWGQKEKDVVQLTEYIRSSLKRYICYKYAN
GNNILPAYLFDQEVEEKIRSGVRQTSAGSYLALEPAVTESLLEQVRKTIG
DLSQIQSKPVLIVSMDIRRYVRKLIESEYYGLPVLSYQELTQQINIQPLG
RICL
>YPA_CD0034 hypothetical protein
MVNAAGDFKRPNRAWSTLQGFETLQRLNKGQFDIWLRRDEPEY
>YPA_CD0076 hypothetical protein
MIRQAIKKCKVFPTDDSVRKVIYLAIRDASKKWSMPIQNWRLAMSRFIIE
FGDRLNDHL
>YPA_CD0069 replication initiation protein
MTNHQALFTHHYRQVKNPNPEFTPREGKKTLPFCRKLMAKAEGFTSRFDF
SMHVAFARSLSLRHRMPPLLRRRAIDALLQGMCFHYDPLANRIQRSITNL
AIECGLATESKSGNLSITRATRALRFLSELGLITYQTEYDPQIGCNIPTD
ITFTPALFSALDVSDVAVAAARRSRVEWENQQREKQRLPRLEMDELIAKA
WRFVRERFRSYQTERKAHGLKRARARRDVDRTRRDIEAIVNRQLTREIAE
GRFVGNLDAVRREKARRVKERMLMSRNNNYTRLATGAT
>YPA_CD0015 type III secretion protein
MSGEKTEQPTPKKIRDARKKGQVAKSKEVVSTALIVALSAMLMGLSDYYF
EHFSKLMLIPAEQSYLPFSQALSYVVDNVLLEFFYLCFPLLTVAALMAIA
SHVVQYGFLISGEAIKPDIKKINPIEGAKRIFSIKSLVEFLKSILKVVLL
SILIWIIIKGNLVTLLQLPTCGIECITPLLGQILRQLMVICTVGFVVISI
ADYAFEYYQYIKELKMSKDEIKREYKEMEGSPEIKSKRRQFHQEIQSRNM
RENVKRSSVVVANPTHIAIGILYKRGETPLPLVTFKYTDAQVQTVRKIAE
EEGVPILQRIPLARALYWDALVDHYIPAEQIEATAEVLRWLERQNIEKQH
SEML
>YPA_CD0012 type III secretion protein
MAFPLHSFFKRVLTGTLLLLSNYSWAQELDWLPIPYVYVAKGESLRDLLI
DFSANYDATVVVSDKINDKVSGQFEHDNPQDFLQHIASLYNLVWYYDGNV
LYIFKNSEVASRLIRLQESEAAELKLALQRSGIWEPRFGWRPDASNRLVY
VSGPPRYLELVEQTAAALEQQTQIRSEKTGALAIEIFPLKYASASDRTIH
YRDDEVAAPGVATILQRVLSDATIQQVTVDNQRIPQAATRASAQAKVEAD
PSLNAIIVRDSPERMPMYQRLIHALDKPSARIEVALSIVDINADQLTELG
VDWRVGIRTGNNHQVVIKTTGDQSNIASNGALGSLIDARGLDYLLARVNL
LENEGSAQVVSRPTLLTQENAQAVIDHHETYYVKVTGKEVAELKGITYGT
MLRMTPRVLTQGDKSEISLNLHIEDGNQKPNSSGIDGIPTISRTVVDTVA
RVGHGQSLIIGGIYRDELSVALSKVPLLGDIPYLGALFRRKSELTRRTVR
LFIIEPRIIDEGIAHHLALGNGRDLRTGILAVDEISNQSTTLNKLLGGFQ
CQPLNKAQEVQKWLSQNNKSSYLTQCKMDKSLGWRVVEGACTPAESWCVS
APKRGVL
>YPA_CD0041 yopT chaperone
MQTTFTELMQQLFLKLGLNHQVNENDVYTFTFEVDGHIQVLIACYHQQWV
QLFSELGADLPTNDNLFGEHWPAHVQGRLDGKPILWSQQSLVGLDIDEMQ
AWLERFIDDIEQRKEPQNTKFQPNSTSPILFI
>YPA_CD0081 type III secretion protein
MTQLEEQLHNVETVRSITMQLEMALTKLKKDMMRGGDAKQYQVWQRESKA
LESAIAIIHYVAGDLK
>YPA_CD0006 type III secretion lipoprotein
MKVKTSLSTLILILFLTGCKVDLYTGISQKEGNEMLALLRQEGLSADKEP
DKDGKIKLLVEESDVAQAIDILKRKGYPHESFSTLQDVFPKDGLISSPIE
ELARLNYAKAQEISRTLSEIDGVLVARVHVVLPEEQNNKGKKGVAASASV
FIKHAADIQFDTYIPQIKQLVNNSIEGLAYDRISVILVPSVDVRQSSHLP
RNTSILSIQVSEESKGHLIGLLSLLILLLPVTNLAQYFWLQRKK
>YPA_CD0009 type III secretion protein
MKYKLNVLLAEIALIGTGNHYHEEANCIAEWLHLKGEEEAVQLIRLSSLM
NRGDYASALQQGNKLAYPDLEPWLALCEYRLGLGSALESRLNRLARSQDP
RIQTFVNGMREQLKT
>YPA_CD0068 replication transcriptional regulator
MSQIENAVTSSSKRAYRKGNPLTGAEKQRMSVSRKKETHKAINVFIQNDL
KNELLQLCEDSGLTQTEMIERWIQREKAARTNAA
>YPA_CD0085 hypothetical protein
MYKLSELADEDIYNIASYTIRHFGVTQAKLYHENLAKVFELLAKNPELGA
ECNWICSDIRRFQYKKHGIYYITLSNDILISRVLHQSIDIDVQDFPEHE
>YPA_CD0024 Yop secretion and targeting protein
MAYDLSEFMGDIVALVDKRWAGIHDIEHLANAFSLPTPEIKVRFYQDLKR
MFRLFPLGVFSDEEQRQNLLQMCQNAIDMAIESEEEELSELD
>YPA_CD0087 transposase remnant
MDVHHAVRDIGEWIQSYYNTPPSAQWWITAL
>YPA_CD0045 hypothetical protein
MTQPKQTKRRFSPEFKLEAIEQVVKYQRSTIEVARALELDPSQLRKWIRQ
YKEEVSGMTPDNPALTPEQREIQSLRAQIKRLEMEKEILKQAAVLMSEFP
IKSLR
>YPA_CD0007 type III secretion protein
MPNIEIAQADEVIITTLEELGPAEPTTDQIMRFDAAMSEDTQGLGHSLLK
EVSDIQKSFKTVKSDLHTKLAVSVDNPNDLMLMQWSLIRITIQEELIAKT
AGRMSQNVETLSKGG
>YPA_CD0033 Yop negative regulation/targeting component
MTINIKTDSPIITTGSQLDAITTETVKQSGEIKKTEDTRHEAQAIKSSEA
SLSRSQVPELIKPSQGINVALLSKSQGDLNGTLSILLLLLELARKAREMG
LQQRDIENKATITAQKEQVAEMVSGAKLMIAMAVVSGIMAATSTVASAFS
IAKEVKIVKQEQILNSNIAGREQLIDTKMQQMSNIGDKAVSREDIGRIWK
PEQVADQNKLALLDKEFRMTDSKANAFNAATQPLGQMANSAIQVHQGYSQ
AEVKEKEVNASIAANEKQKAEEAMNYNDNFMKDVLRLIEQYVSSHTHAMK
AAFGVV
>YPA_CD0005 type III secretion protein
MMENYITSFQLRFCPAAYLHLEQLPSLWRSILPYLPQWRDSAHLNAALLD
EFSLDTDYEEPHGLGALPLQPQSQLELLLCRLGLVLHGEAIRRCVLASPL
QQLLTLVNQETLRQIIVQHELLIGPWPTHWQRPLPTEIESRTMIQSGLAF
WLAAMEPQPQAWCKRLSLRLPLATPSEPWLVAESQRPLAQTLCHKLVKQV
TPTCSHLFK
>YPA_CD0030 V antigen, antihost protein/regulator
MIRAYEQNPQHFIEDLEKVRVEQLTGHGSSVLEELVQLVKDKNIDISIKY
DPRKDSEVFANRVITDDIELLKKILAYFLPEDAILKGGHYDNQLQNGIKR
VKEFLESSPNTQWELRAFMAVMHFSLTADRIDDDILKVIVDSMNHHGDAR
SKLREELAELTAELKIYSVIQAEINKHLSSSGTINIHDKSINLMDKNLYG
YTDEEIFKASAEYKILEKMPQTTIQVDGSEKKIVSIKDFLGSENKRTGAL
GNLKNSYSYNKDNNELSHFATTCSDKSRPLNDLVSQKTTQLSDITSRFNS
AIEALNRFIQKYDSVMQRLLDDTSGK
>YPA_CD0071 targeted effector protein kinase
MKSVKIMGTMPPSISLAKAHERISQHWQNPVGELNIGGKRYRIIDNQVLR
LNPHSGFSLFREGVGKIFSGKMFNFSIARNLTDTLHAAQKTTSQELRSDI
PNALSNLFGAKPQTELPLGWKGEPLSGAPDLEGMRVAETDKFAEGESHIS
IIETKDKQRLVAKIERSIAEGHLFAELEAYKHIYKTAGKHPNLANVHGMA
VVPYGNRKEEALLMDEVDGWRCSDTLRTLADSWKQGKINSEAYWGTIKFI
AHRLLDVTNHLAKAGVVHNDIKPGNVVFDRASGEPVVIDLGLHSRSGEQP
KGFTESFKAPELGVGNLGASEKSDVFLVVSTLLHCIEGFEKNPEIKPNQG
LRFITSEPAHVMDENGYPIHRPGIAGVETAYTRFITDILGVSADSRPDSN
EARLHEFLSDGTIDEESAKQILKDTLTGEMSPLSTDVRRITPKKLRELSD
LLRTHLSSAATKQLDMGGVLSDLDTMLVALDKAEREGGVDKDQLKSFNSL
ILKTYRVIEDYVKGREGDTKNSSTEVSPYHRSNFMLSIVEPSLQRIQKHL
DQTHSFSDIGSLVRAHKHLETLLEVLVTLSQQGQPVSSETYGFLNRLTEA
KITLSQQLNTLQQQQESAKAQLSILINRSGSWADVARQSLQRFDSTRPVV
KFGTEQYTAIHRQMMAAHAAITLQEVSEFTDDMRNFTVDSIPLLIQLGRS
SLMDEHLVEQREKLRELTTIAERLNRLEREWM
>YPA_CD0079 Yop regulator
MKSSHFDEYDKTLKQAELAIADSDHRAKLLQEMCADIGLTPEAVMKIFAG
RSAEEIKPAERELLDEIKRQRERQPQHPYDGKRPRKPTMMRGQII
>YPA_CD0003 type III secretion regulatory protein
MKINTLQSLINQQITQVGHGGQAGRLTETNPLTENSHQISTAEKAFANEV
LEHVKNTALSRHDIACLLPRVSNLELKQGKAGEVIVTGLRTEQLSLSDAK
LLLEAAMRQDTAADG
>YPA_CD0061 transposase
MPVDFLTTEQEQNYGCYVAEPNDVQLVRYFHLDERDLAFIYQRRGKHNRL
GIALQLTTARFLGTFITDLTQVLPGVQHFVAVQLNIRRPEVLSRYAERDT
TRREHTAQIKEYYGYHEFGDFPWSFRLKRLLYTRAWLSNERPGLMFDFAT
AWLLQNKILLPGATTLVRLVSEIRERANQRLWKKLAAIHYLTELNGTKKR
LLDDAPEHIITGPWKRLVYDAEGRIQRAGYSLCLLERLQDALRCRDIWLK
NSDRWGDLREKLLQGEEWQAQRVLVCRALGHPTDGHKGVQQLAVQLDETW
RAVASRFEGNTEVHICNDGKYPSLTISSLEKLEEPLSLLRLNNRVRQLLP
PVDLTELLLEIDARTGFTREFTHVSESGARAQDLHISLCAVLMAEACNIG
LEPLIKHNIPALTRHRLSWMKQNYLQAETLVSANARLVDFQSTLELARRW
GGGEVASVDGMRFVTPVKTVNSGPNRKYFGSGRGITWYNFVSDQYSGFHG
IVVPGTLRDSIFVLEGLLEQQTGLNPVEIMTDTAGTSDIIFGLFWLLGYQ
FSPRLADAGEAVFWRVDKSANYGALDELARGCADLSKAENQWDEMMRTAG
SLKLGTIHASELIRSLLKSSRPSGLAQAIMAVGRVNKTLYLLNYIDDEDY
RRRILTQLNRGESRHAVARAICYGQRGEIRKRYREGQEDQLGALGLVTNA
VVLWNTLYMQEALSWMRSNGEETRDEDIARLSPLMHGHINMLGHYTFTLS
DDILNGELRALNFNLNNELSP
>YPA_CD0084 hypothetical protein
MKSPYPTWRDGYRYQKADIMLNDVGSRPGQIDMFDETPPHANSKHLMQVV
DASIALG
>YPA_CD0067 Phospholipase D/Transphosphatidylase
MDLLVNAGIPVRTVNSFKALHDKVIIVDGKNTQMGSFNFSQAAVQSNSEN
VLIIWGDFTVVQAYLQYWQSRWNKGTDWRSSY
>YPA_CD0020 type III secretion protein
MNKITTRSPLEPEYQPLGKPHHALQACVDFEQALLHNNKGNCHPKEESLK
PVRPHDLGKKEGQKGDGLRAHAPLAATSQPGRKEVGLKPQHNHQNNHDFN
LSPLAEGATNRAHLYQQDSRFDDRVESIINALMPLAPFLEGVTCETGTSS
ESPCEPSGHDELFVQQSPIDSAQPVQLNSKPTVQPLNPAADGAEVIVWSV
GRETPASIAKNQRDSRQKRLAEEPLALHQKALPEICPPAVSATPDDHLVA
RWCATPVTEVAEKSARFPYKATVQSEQLDMTELADRSQHLTDGVDSSKDT
IEPPRPEKLLLPREETLPEMYSLSFTAPVVTPGDHLLATMRATRLASVSE
QLIQLAQRLAVELELRGGSSQVTQLHLNLPELGAIMVRIAEIPGKLHVEL
IASREALRILAQGSYDLLERLQRIEPTQLDFQASDDSEQESRQKRHVYEE
WEAEE
>YPA_CD0037 targeted effector protein
MAVSRLRDCLDRQAHELELNNLGLSSLPELPPHLESLVASCNSLTELPEL
PQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIID
VDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKK
LPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSL
EALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEI
RSLCDLPPSLEELNVSNNKLIELPALPPRLERLIASFNHLAEVPELPQNL
KQLHVEYNPLREFPDIPESVEDLRMNSERVVDPYEFAHETTDKLEDDVFE
>YPA_CD0043 hypothetical protein
MKEIAKRVHRIYCLLKLNIRRKGKQRLPACNPSPLAVPERLNLSGSVDFM
HNAQCTERWVSFQYVIMSWMITIVKHWRL