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2024-06-25 08:24:23

Gene list

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Gene type: CDS
Genomic element: pCD1

Number of genes found: 71

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Yersinia pestis CO92, CO92
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA YPCD1.09c hypothetical proteinpCD1 CDS4691 243 - 0.440329
NA YPCD1.22c hypothetical proteinpCD1 CDS14020 390 - 0.276923
NA YPCD1.14n hypothetical proteinpCD1 CDS9123 198 - 0.5
NA YPCD1.15c hypothetical proteinpCD1 CDS9429 459 - 0.551198
NA YPCD1.93 putative transposasepCD1 CDS66932 267 + 0.479401
NA YPCD1.01 putative transposasepCD1 CDS88 1023 + 0.527859
NA YPCD1.08c hypothetical proteinpCD1 CDS4399 300 - 0.38
NA YPCD1.94 putative transposasepCD1 CDS67222 810 + 0.504938
NA YPCD1.92 hypothetical proteinpCD1 CDS66503 330 + 0.281818
NA YPCD1.73c hypothetical proteinpCD1 CDS53679 450 - 0.451111
NA YPCD1.96c putative transposasepCD1 CDS68947 432 - 0.569444
NA YPCD1.23 hypothetical proteinpCD1 CDS14681 420 + 0.388095
NA YPCD1.91n hypothetical proteinpCD1 CDS65900 465 + 0.301075
NA YPCD1.97c putative transposasepCD1 CDS69378 927 - 0.558792
NA YPCD1.07 hypothetical proteinpCD1 CDS4261 297 + 0.373737
NA YPCD1.16c hypothetical proteinpCD1 CDS9911 324 - 0.481481
NA YPCD1.02 transposase/IS proteinpCD1 CDS1110 780 + 0.503846
ORFC YPCD1.65 putative transposasepCD1 CDS46302 309 + 0.459547
copB YPCD1.79c replication proteinpCD1 CDS57466 255 - 0.423529
lcrE YPCD1.39c secretion control proteinpCD1 CDS27107 882 - 0.461451
lcrG YPCD1.32c low calcium response protein GpCD1 CDS22917 288 - 0.46875
lcrO YPCD1.58 type III secretion apparatus componentpCD1 CDS42133 348 + 0.468391
lcrQ YPCD1.62 LCR negative regulatorpCD1 CDS44686 348 + 0.479885
lcrR YPCD1.33c low calcium response protein RpCD1 CDS23246 441 - 0.487528
lcrS YPCD1.63 putative transposasepCD1 CDS45581 267 + 0.434457
lcrV YPCD1.31c secreted effector proteinpCD1 CDS21935 981 - 0.377166
repA1 YPCD1.77c replication proteinpCD1 CDS56291 867 - 0.542099
sopA YPCD1.13c sopAB transcription repressorpCD1 CDS7157 1167 - 0.441302
sopB YPCD1.12c putative plasmid-partitioning control proteinpCD1 CDS6195 963 - 0.417445
sycD YPCD1.30c secretion chaperonepCD1 CDS21416 507 - 0.441815
sycH YPCD1.95c secretion chaperonepCD1 CDS68179 426 - 0.41784
sycN YPCD1.37c hypothetical proteinpCD1 CDS26490 372 - 0.526882
sycT YPCD1.21 YopT chaperonepCD1 CDS13578 399 + 0.411028
tap YPCD1.78c repA translation proteinpCD1 CDS57150 75 - 0.44
tnpA YPCD1.90c putative transposasepCD1 CDS62851 2316 - 0.519862
tnpR YPCD1.91 putative resolvasepCD1 CDS65330 552 + 0.46558
tyeA YPCD1.38c Yop secretion and targeting control proteinpCD1 CDS26848 279 - 0.433692
virF YPCD1.49 transcriptional regulatorpCD1 CDS36112 816 + 0.416667
virG YPCD1.48 needle complex outer membrane lipoprotein precursorpCD1 CDS35593 396 + 0.444444
yerA YPCD1.05c secretion chaperonepCD1 CDS3014 393 - 0.409669
ylpB YPCD1.59 needle complex inner membrane lipoproteinpCD1 CDS42487 735 + 0.428571
yopB YPCD1.29c secreted effector proteinpCD1 CDS20233 1206 - 0.466833
yopD YPCD1.28c secreted effector proteinpCD1 CDS19294 921 - 0.431053
yopE YPCD1.06 putative outer membrane virulence proteinpCD1 CDS3600 660 + 0.510606
yopH YPCD1.67c putative secreted protein-tyrosine phosphatasepCD1 CDS47122 1407 - 0.474058
yopJ YPCD1.71c targeted effector proteinpCD1 CDS50211 867 - 0.344867
yopM YPCD1.26c secreted effector proteinpCD1 CDS16336 1230 - 0.389431
yopQ YPCD1.19c Yop targeting proteinpCD1 CDS11562 549 - 0.335155
yopR YPCD1.57 secreted proteinpCD1 CDS41635 498 + 0.429719
yopT YPCD1.20 Yop targeted effectorpCD1 CDS12610 969 + 0.431373
ypkA YPCD1.72c secreted protein kinasepCD1 CDS51473 2199 - 0.481583
yscA YPCD1.50 hypothetical proteinpCD1 CDS37006 99 + 0.313131
yscB YPCD1.51 type III secretion apparatus componentpCD1 CDS37330 414 + 0.417874
yscC YPCD1.52 outer membrane secretin precursorpCD1 CDS37749 1824 + 0.454496
yscD YPCD1.53 virulence proteinpCD1 CDS39569 1260 + 0.46746
yscE YPCD1.54 type III secretion apparatus componentpCD1 CDS40825 201 + 0.422886
yscF YPCD1.55 needle complex major subunitpCD1 CDS41026 264 + 0.416667
yscG YPCD1.56 type III secretion apparatus componentpCD1 CDS41291 348 + 0.439655
yscK YPCD1.60 type III secretion apparatus componentpCD1 CDS43221 630 + 0.485714
yscL YPCD1.61 type III secretion proteinpCD1 CDS43796 666 + 0.448949
yscN YPCD1.40 type III secretion system ATPasepCD1 CDS28186 1320 + 0.508333
yscO YPCD1.41 type III secretion apparatus componentpCD1 CDS29502 465 + 0.458065
yscP YPCD1.42 type III secretion apparatus componentpCD1 CDS29966 1368 + 0.486842
yscQ YPCD1.43 type III secretion proteinpCD1 CDS31330 924 + 0.481602
yscR YPCD1.44 needle complex export proteinpCD1 CDS32250 654 + 0.43578
yscS YPCD1.45 needle complex export proteinpCD1 CDS32905 267 + 0.453184
yscT YPCD1.46 needle complex export proteinpCD1 CDS33168 786 + 0.428753
yscU YPCD1.47 needle complex export proteinpCD1 CDS33953 1065 + 0.431925
yscV YPCD1.34c low calcium response protein DpCD1 CDS23683 2115 - 0.463357
yscX YPCD1.36c hypothetical proteinpCD1 CDS26125 369 - 0.495935
yscY YPCD1.35c hypothetical proteinpCD1 CDS25784 345 - 0.46087