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2024-11-04 22:18:04

Gene list

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Gene type: CDS
Gene type: CDS
Genomic element: pSS_046

Number of genes found: 238

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Shigella sonnei Ss046, Ss046
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA SSO_P193 IS600 ORF1pSS_046 CDS173682 303 + 0.462046
NA SSO_P060 IS629 ORF1pSS_046 CDS57572 327 + 0.541284
NA SSO_P017 IS4 ORFpSS_046 CDS13093 573 - 0.521815
NA SSO_P133 IS629 ORF2pSS_046 CDS120320 429 + 0.5338
NA SSO_P119 IS600 ORF2pSS_046 CDS109478 621 - 0.521739
NA SSO_P163 IS21 ORF1pSS_046 CDS142748 927 - 0.538296
NA SSO_P077 IS21 ORF1pSS_046 CDS71276 336 + 0.565476
NA SSO_P023 hypothetical proteinpSS_046 CDS18113 225 - 0.515556
NA SSO_P127 putative transposase, fragmentpSS_046 CDS116456 201 - 0.472637
NA SSO_P082 IS100 ORF1pSS_046 CDS74930 1005 - 0.527363
NA SSO_P240 hypothetical proteinpSS_046 CDS210796 693 - 0.344877
NA SSO_P210 ISSfl1 ORF2pSS_046 CDS184802 225 + 0.52
NA SSO_P015 putative IS91 ORF2pSS_046 CDS12450 186 - 0.537634
NA SSO_P029 putative transposasepSS_046 CDS24497 1128 + 0.493794
NA SSO_P026 IS3 ORF2pSS_046 CDS20174 870 + 0.556322
NA SSO_P121 putative transposasepSS_046 CDS110830 1536 + 0.540365
NA SSO_P156 hypothetical proteinpSS_046 CDS137720 639 - 0.370892
NA SSO_P062 IS1294 ORFpSS_046 CDS59338 906 + 0.571744
NA SSO_P173 IS4 ORFpSS_046 CDS150124 1329 + 0.542513
NA SSO_P158 hypothetical proteinpSS_046 CDS139608 291 - 0.415808
NA SSO_P006 IS630 ORFpSS_046 CDS3729 1032 + 0.528101
NA SSO_P145 IS629 ORF1pSS_046 CDS130009 327 + 0.541284
NA SSO_P154 IS2 ORF1pSS_046 CDS136883 366 - 0.530055
NA SSO_P038 IS629 ORF2pSS_046 CDS33890 888 - 0.540541
NA SSO_P149 hypothetical proteinpSS_046 CDS133712 528 - 0.460227
NA SSO_P140 IS629 ORF2pSS_046 CDS123268 564 - 0.558511
NA SSO_P195 oriT nicking and unwinding protein, fragmentpSS_046 CDS175043 837 + 0.622461
NA SSO_P130 IS629 ORF2pSS_046 CDS117727 453 + 0.543046
NA SSO_P045 ISSfl2 ORFpSS_046 CDS41178 417 - 0.604317
NA SSO_P069 IS1294 ORFpSS_046 CDS65173 915 - 0.571585
NA SSO_P152 IS600 ORF2pSS_046 CDS135678 201 - 0.527363
NA SSO_P221 IS630 ORFpSS_046 CDS192788 276 + 0.507246
NA SSO_P132 IS21 ORF2pSS_046 CDS119425 798 + 0.525063
NA SSO_P235 IS629 ORF1pSS_046 CDS207506 276 + 0.550725
NA SSO_P064 ISSfl1 ORF2pSS_046 CDS61000 390 + 0.515385
NA SSO_P157 IS100 ORF2pSS_046 CDS139323 234 + 0.491453
NA SSO_P141 IS629 ORF1pSS_046 CDS123938 219 - 0.538813
NA SSO_P178 IS600 ORF2pSS_046 CDS155687 714 + 0.519608
NA SSO_P080 IS2 ORF1pSS_046 CDS72928 366 - 0.530055
NA SSO_P209 IS1294 ORFpSS_046 CDS183349 1200 - 0.575
NA SSO_P046 ISSfl2 ORFpSS_046 CDS41773 546 - 0.57326
NA SSO_P159 sugar phosphate transport protein-like proteinpSS_046 CDS139867 252 - 0.440476
NA SSO_P040 IS1294 ORFpSS_046 CDS35770 1200 + 0.575
NA SSO_P228 IS630 ORFpSS_046 CDS199692 1032 + 0.528101
NA SSO_P139 IS3 ORF2pSS_046 CDS123053 243 - 0.559671
NA SSO_P020 putative transposase, fragmentpSS_046 CDS16042 159 + 0.339623
NA SSO_P217 IS600 ORF1pSS_046 CDS190406 303 - 0.462046
NA SSO_P001 putative resolvase, fragmentpSS_046 CDS485 465 + 0.507527
NA SSO_P014 IS91 ORFpSS_046 CDS12094 357 - 0.521008
NA SSO_P183 IS630 ORFpSS_046 CDS160722 1032 - 0.527132
NA SSO_P216 IS600 ORF2pSS_046 CDS189552 714 - 0.519608
NA SSO_P211 putative transposasepSS_046 CDS185165 168 + 0.482143
NA SSO_P162 IS21 ORF2pSS_046 CDS141951 798 - 0.526316
NA SSO_P083 hypothetical proteinpSS_046 CDS76173 201 + 0.38806
NA SSO_P063 ISSfl1 ORF1pSS_046 CDS60545 450 + 0.526667
NA SSO_P118 hypothetical proteinpSS_046 CDS108668 234 + 0.316239
NA SSO_P081 ISSfl2 ORFpSS_046 CDS73542 1197 - 0.578112
NA SSO_P052 IS600 ORF1pSS_046 CDS48995 303 - 0.465347
NA SSO_P123 IS600 ORF2pSS_046 CDS113272 189 + 0.460317
NA SSO_P214 IS91 ORFpSS_046 CDS188127 1074 - 0.549348
NA SSO_P070 hypothetical proteinpSS_046 CDS66068 273 - 0.498168
NA SSO_P036 IS21 ORF1pSS_046 CDS31617 1149 + 0.531767
NA SSO_P068 ISSfl1 ORF2pSS_046 CDS64523 363 + 0.53168
NA SSO_P002 IS2 ORF2pSS_046 CDS275 219 - 0.479452
NA SSO_P219 putative IS91 ORF2pSS_046 CDS190770 234 - 0.448718
NA SSO_P010 hypothetical proteinpSS_046 CDS8476 585 - 0.521368
NA SSO_P136 putative IS91 ORF2pSS_046 CDS121582 423 - 0.472813
NA SSO_P164 IS600 ORF1pSS_046 CDS143931 303 + 0.462046
NA SSO_P056 IS630 ORFpSS_046 CDS51223 1032 + 0.52907
NA SSO_P220 IS1294 ORFpSS_046 CDS191333 1209 - 0.574855
NA SSO_P194 IS600 ORF2pSS_046 CDS174125 714 + 0.521008
NA SSO_P042 putative transposasepSS_046 CDS38511 1128 + 0.493794
NA SSO_P129 IS629 ORF1pSS_046 CDS117401 327 + 0.544343
NA SSO_P057 hypothetical proteinpSS_046 CDS52274 252 - 0.436508
NA SSO_P161 hypothetical proteinpSS_046 CDS141439 474 + 0.582278
NA SSO_P012 IS630 ORFpSS_046 CDS10630 1032 + 0.530039
NA SSO_P137 putative reverse transcriptase, fragmentpSS_046 CDS122667 240 - 0.520833
NA SSO_P011 hypothetical proteinpSS_046 CDS9390 579 - 0.312608
NA SSO_P043 IS2 ORF2pSS_046 CDS40072 288 + 0.503472
NA SSO_P236 putative transposasepSS_046 CDS207903 270 - 0.451852
NA SSO_P199 hypothetical proteinpSS_046 CDS177395 264 + 0.583333
NA SSO_P138 putative reverse transcriptase, fragmentpSS_046 CDS122938 201 - 0.562189
NA SSO_P027 IS100 ORF1pSS_046 CDS21831 1005 + 0.527363
NA SSO_P168 hypothetical proteinpSS_046 CDS148309 270 + 0.503704
NA SSO_P037 IS21 ORF2pSS_046 CDS32765 798 + 0.526316
NA SSO_P239 IS911 ORF2pSS_046 CDS209915 858 + 0.547786
NA SSO_P179 hypothetical proteinpSS_046 CDS156722 792 + 0.401515
NA SSO_P073 IS600 ORF1pSS_046 CDS69155 303 + 0.465347
NA SSO_P016 putative transposasepSS_046 CDS12798 285 + 0.536842
NA SSO_P222 hypothetical proteinpSS_046 CDS192522 273 - 0.498168
NA SSO_P150 hypothetical proteinpSS_046 CDS134323 246 - 0.528455
NA SSO_P078 hypothetical proteinpSS_046 CDS71581 294 + 0.561224
NA SSO_P176 hypothetical proteinpSS_046 CDS152009 2913 - 0.509097
NA SSO_P166 putative IS orf, fragmentpSS_046 CDS145341 255 + 0.568627
NA SSO_P019 putative IS orf, fragmentpSS_046 CDS14160 1233 + 0.559611
NA SSO_P135 IS91 ORFpSS_046 CDS121226 357 - 0.52381
NA SSO_P025 IS3 ORF1pSS_046 CDS19878 300 + 0.53
NA SSO_P053 hypothetical proteinpSS_046 CDS49336 468 + 0.352564
NA SSO_P200 hypothetical proteinpSS_046 CDS177847 462 + 0.478355
NA SSO_P035 hypothetical proteinpSS_046 CDS30380 585 - 0.488889
NA SSO_P054 ISSfl1 ORF1pSS_046 CDS50243 471 + 0.5138
NA SSO_P055 ISSfl1 ORF2pSS_046 CDS50719 390 + 0.515385
NA SSO_P218 IS630 ORFpSS_046 CDS190993 192 + 0.510417
NA SSO_P155 putative IS orf, fragmentpSS_046 CDS137447 219 - 0.420091
NA SSO_P030 iso-IS1 ORF2pSS_046 CDS26092 216 + 0.527778
NA SSO_P074 IS600 ORF2pSS_046 CDS69598 714 + 0.519608
NA SSO_P206 hypothetical proteinpSS_046 CDS182317 192 + 0.520833
NA SSO_P172 putative IS orfpSS_046 CDS149825 243 + 0.55144
NA SSO_P185 hypothetical proteinpSS_046 CDS162929 429 + 0.599068
NA SSO_P018 ISSfl4 ORF2pSS_046 CDS13793 348 + 0.566092
NA SSO_P061 IS629 ORF2pSS_046 CDS57898 888 + 0.540541
NA SSO_P165 IS600 ORF2pSS_046 CDS144374 714 + 0.519608
NA SSO_P207 hypothetical proteinpSS_046 CDS182527 306 + 0.464052
NA SSO_P234 putative aquaporinpSS_046 CDS206790 513 + 0.551657
NA SSO_P175 IS3 ORF2pSS_046 CDS151803 219 + 0.575342
NA SSO_P021 putative transposase, fragmentpSS_046 CDS16197 171 + 0.461988
NA SSO_P187 putative antirestriction proteinpSS_046 CDS164665 348 + 0.543103
NA SSO_P005 hypothetical proteinpSS_046 CDS3363 219 + 0.378995
NA SSO_P075 putative IS orfpSS_046 CDS70436 243 + 0.497942
NA SSO_P131 IS21 ORF1pSS_046 CDS118277 1149 + 0.531767
NA SSO_P051 IS600 ORF2pSS_046 CDS48324 531 - 0.53484
NA SSO_P120 IS600 ORF1pSS_046 CDS110239 303 - 0.458746
NA SSO_P034 hypothetical proteinpSS_046 CDS29838 600 - 0.468333
NA SSO_P188 IS600 ORF1pSS_046 CDS165069 303 + 0.465347
NA SSO_P189 IS600 ORF2pSS_046 CDS165512 714 + 0.521008
NA SSO_P122 putative transposasepSS_046 CDS112382 756 + 0.507937
NA SSO_P151 putative reverse transcriptase, fragmentpSS_046 CDS134538 1128 - 0.548759
NA SSO_P237 IS91 ORFpSS_046 CDS208316 1074 - 0.550279
NA SSO_P134 putative transposase, fragmentpSS_046 CDS120751 228 - 0.464912
NA SSO_P144 adhesion protein, fragmentpSS_046 CDS129560 258 + 0.391473
NA SSO_P013 IS21 ORF2pSS_046 CDS11667 180 - 0.433333
NA SSO_P180 hypothetical proteinpSS_046 CDS157516 1089 + 0.43067
NA SSO_P126 hypothetical proteinpSS_046 CDS115155 717 - 0.316597
NA SSO_P146 IS629 ORF2pSS_046 CDS130607 606 + 0.537954
NA SSO_P148 hypothetical proteinpSS_046 CDS133174 186 + 0.424731
NA SSO_P174 putative IS orfpSS_046 CDS151463 243 - 0.54321
NA SSO_P153 IS2 ORF2pSS_046 CDS136020 840 - 0.546429
NA SSO_P066 ISSfl1 ORF1pSS_046 CDS63417 297 + 0.498316
NA SSO_P184 putative transposasepSS_046 CDS161897 669 + 0.536622
NA SSO_P125 IS3 ORF1pSS_046 CDS113837 300 - 0.526667
NA SSO_P079 IS2 ORF2pSS_046 CDS72065 840 - 0.546429
NA SSO_P039 IS629 ORF1pSS_046 CDS34777 276 - 0.550725
NA SSO_P047 hypothetical proteinpSS_046 CDS42373 273 + 0.498168
NA SSO_P033 putative transposase, fragmentpSS_046 CDS29064 486 + 0.450617
NA SSO_P048 IS1294 ORFpSS_046 CDS42626 1209 + 0.574028
NA SSO_P028 ISSfl2 ORFpSS_046 CDS23027 1197 + 0.578112
NA SSO_P124 IS3 ORF2pSS_046 CDS113457 384 - 0.575521
NA SSO_P076 IS1353 putative transposase-like proteinpSS_046 CDS70733 423 + 0.503546
NA SSO_P238 putative IS91 ORF2pSS_046 CDS209503 366 - 0.530055
NA SSO_P215 putative IS91 ORF2pSS_046 CDS189314 186 - 0.591398
NA SSO_P071 ISSfl4 ORF1pSS_046 CDS66360 588 - 0.493197
NA SSO_P186 IS186 ORF1pSS_046 CDS163371 717 + 0.482566
NA SSO_P208 hypothetical proteinpSS_046 CDS182829 288 + 0.395833
NA SSO_P128 hypothetical proteinpSS_046 CDS116887 333 - 0.525526
NA SSO_P177 IS600 ORF1pSS_046 CDS155244 303 + 0.465347
NA SSO_P192 oriT nicking and unwinding protein, fragmentpSS_046 CDS169342 4284 + 0.594538
acp SSO_P086 AcppSS_046 CDS80158 237 - 0.295359
finO SSO_P197 FinOpSS_046 CDS176701 561 + 0.565062
hmo SSO_P201 putative regulatorpSS_046 CDS178354 210 + 0.366667
icsA/virG SSO_P143 IcsA/VirGpSS_046 CDS126066 3309 + 0.40828
icsB SSO_P094 IcsBpSS_046 CDS87785 1485 - 0.340067
icsP/sopA SSO_P241 IcsP/SopApSS_046 CDS213078 948 + 0.376582
insB SSO_P160 IS1 ORF2pSS_046 CDS140818 504 + 0.543651
insB SSO_P203 IS1 ORF2pSS_046 CDS178862 504 - 0.543651
insB SSO_P067 IS1 ORF2pSS_046 CDS63936 504 + 0.543651
ipaA SSO_P087 IpaApSS_046 CDS80398 1902 - 0.353312
ipaB SSO_P090 IpaBpSS_046 CDS84468 1743 - 0.378084
ipaC SSO_P089 IpaCpSS_046 CDS83357 1092 - 0.389194
ipaD SSO_P088 IpaDpSS_046 CDS82308 999 - 0.354354
ipaH1.4 SSO_P212 invasion plasmid antigenpSS_046 CDS185350 1728 - 0.459491
ipaH4.5 SSO_P059 invasion plasmid antigenpSS_046 CDS55796 1725 + 0.474203
ipaH7.8 SSO_P058 invasion plasmid antigenpSS_046 CDS53671 1698 + 0.460542
ipaH9.8 SSO_P167 invasion plasmid antigenpSS_046 CDS146464 1638 + 0.482906
ipaJ SSO_P084 IpaJpSS_046 CDS77287 780 + 0.378205
ipgA SSO_P093 IpgApSS_046 CDS87383 390 - 0.302564
ipgB1 SSO_P092 IpgB1pSS_046 CDS86741 627 - 0.334928
ipgB2 SSO_P024 IpgB2pSS_046 CDS18740 567 + 0.329806
ipgC SSO_P091 IpgCpSS_046 CDS86216 468 - 0.356838
ipgD SSO_P095 IpgDpSS_046 CDS89583 1617 + 0.354978
ipgE SSO_P096 IpgEpSS_046 CDS91209 363 + 0.349862
ipgF SSO_P097 IpgFpSS_046 CDS91571 459 + 0.35512
mkaD SSO_P009 mouse killing factorpSS_046 CDS7632 720 - 0.379167
mob9 SSO_P171 plasmid mobilization proteinpSS_046 CDS149488 180 - 0.472222
msbB2 SSO_P182 MsbB2pSS_046 CDS159624 945 + 0.433862
mxiA SSO_P109 MxiApSS_046 CDS99964 2067 + 0.341074
mxiC SSO_P108 MxiCpSS_046 CDS98890 1068 + 0.335206
mxiD SSO_P107 MxiDpSS_046 CDS97171 1701 + 0.33157
mxiE SSO_P106 MxiEpSS_046 CDS96552 633 + 0.327014
mxiG SSO_P098 MxiGpSS_046 CDS92038 1116 + 0.30914
mxiH SSO_P099 MxiHpSS_046 CDS93161 252 + 0.34127
mxiI SSO_P100 MxiIpSS_046 CDS93425 294 + 0.35034
mxiJ SSO_P101 MxiJpSS_046 CDS93724 726 + 0.341598
mxiK SSO_P102 MxiKpSS_046 CDS94446 528 + 0.339015
mxiL SSO_P104 MxiLpSS_046 CDS95603 408 + 0.303922
mxiM SSO_P105 MxiMpSS_046 CDS95994 429 + 0.296037
mxiN SSO_P103 MxiNpSS_046 CDS94915 696 + 0.318966
ospB SSO_P003 OspBpSS_046 CDS1176 867 + 0.32872
ospC1 SSO_P049 OspC1pSS_046 CDS44739 1413 + 0.319887
ospC2 SSO_P065 OspC2pSS_046 CDS61538 1455 - 0.323711
ospC3 SSO_P072 OspC3pSS_046 CDS67363 1455 + 0.310653
ospD1 SSO_P022 OspD1pSS_046 CDS16954 678 + 0.358407
ospD2 SSO_P008 OspD2pSS_046 CDS5491 1710 - 0.331579
ospD3 SSO_P050 OspD3pSS_046 CDS46480 1698 + 0.35689
ospE2 SSO_P213 truncated OspE2pSS_046 CDS187467 168 - 0.333333
ospE2 SSO_P044 OspE2pSS_046 CDS40541 267 + 0.337079
ospG SSO_P170 OspGpSS_046 CDS148830 591 + 0.357022
parA SSO_P031 plasmid segregation proteinpSS_046 CDS26629 1200 + 0.443333
parB SSO_P032 plasmid segregation proteinpSS_046 CDS27828 981 + 0.422018
phoN2/apy SSO_P004 PhoN2 (Apy)pSS_046 CDS2371 741 + 0.425101
repA SSO_P205 RepApSS_046 CDS180760 858 + 0.586247
repB SSO_P204 RepBpSS_046 CDS180209 261 + 0.417625
spa13 SSO_P112 Spa13pSS_046 CDS103833 339 + 0.336283
spa15 SSO_P110 Spa15pSS_046 CDS102043 402 + 0.330846
spa24 SSO_P115 Spa24pSS_046 CDS105916 651 + 0.347158
spa29 SSO_P116 Spa29pSS_046 CDS106841 771 + 0.326848
spa32 SSO_P113 Spa32pSS_046 CDS104158 879 + 0.312856
spa33 SSO_P114 Spa33pSS_046 CDS105030 882 + 0.316327
spa40 SSO_P117 Spa40pSS_046 CDS107618 1029 + 0.316812
spa47 SSO_P111 Spa47pSS_046 CDS102448 1293 + 0.392111
traD SSO_P190 TraD proteinpSS_046 CDS166425 2202 + 0.528156
trbH SSO_P191 hypothetical proteinpSS_046 CDS168626 720 + 0.501389
ushA SSO_P147 UshApSS_046 CDS131553 1653 + 0.405324
virA SSO_P142 VirApSS_046 CDS124335 1203 - 0.351621
virB SSO_P085 VirBpSS_046 CDS79012 930 - 0.34086
virF SSO_P041 VirFpSS_046 CDS37224 789 - 0.304182
virK SSO_P181 VirKpSS_046 CDS158609 951 + 0.418507
wbgT SSO_P224 putative UDP-glucose 6-dehydrogenasepSS_046 CDS194554 1314 + 0.360731
wbgU SSO_P225 putative UDP-glucose 4-epimerasepSS_046 CDS195948 1038 + 0.34104
wbgV SSO_P229 putative glycosyltransferasepSS_046 CDS200756 1245 + 0.298795
wbgW SSO_P230 putative glycosyltransferasepSS_046 CDS201993 987 + 0.265451
wbgX SSO_P231 putative glycosyltransferasepSS_046 CDS202976 1155 + 0.375758
wbgY SSO_P232 putative glycosyltransferasepSS_046 CDS204147 591 + 0.351946
wbgZ SSO_P233 putative epimerase/dehydratasepSS_046 CDS204752 1920 + 0.442187
wzx SSO_P226 putative repeat unit transporterpSS_046 CDS197086 1269 + 0.282112
wzy SSO_P227 putative polysaccharide polymerasepSS_046 CDS198423 1173 + 0.29838
wzz SSO_P223 O antigen chain length determinant proteinpSS_046 CDS193478 1041 + 0.369837
yacB SSO_P169 hypothetical proteinpSS_046 CDS148652 150 + 0.52
yigA SSO_P198 hypothetical proteinpSS_046 CDS177391 213 + 0.615023